Wall clock time and date at job start Tue Mar 31 2020 13:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.63530 * 2 1 4 4 C 1.54329 * 111.00320 * 236.92728 * 2 1 3 5 5 N 1.47026 * 107.26635 * 219.59930 * 4 2 1 6 6 C 1.34771 * 125.64543 * 178.84822 * 5 4 2 7 7 O 1.21278 * 120.00502 * 359.71117 * 6 5 4 8 8 C 1.50701 * 119.99536 * 179.71707 * 6 5 4 9 9 H 1.09003 * 113.23435 * 312.46772 * 8 6 5 10 10 C 1.52886 * 113.98696 * 180.02562 * 8 6 5 11 11 C 1.50766 * 89.76514 * 246.04978 * 10 8 6 12 12 C 1.38254 * 149.30266 * 179.97438 * 11 10 8 13 13 C 1.38142 * 120.15754 * 180.02562 * 12 11 10 14 14 C 1.38460 * 119.71976 * 0.27469 * 13 12 11 15 15 F 1.35106 * 119.93609 * 179.72305 * 14 13 12 16 16 C 1.38199 * 120.12748 * 359.41371 * 14 13 12 17 17 C 1.38377 * 90.24494 * 0.02562 * 11 10 8 18 18 C 1.47417 * 108.70002 * 358.58195 * 5 4 2 19 19 C 1.54907 * 104.83688 * 24.35939 * 18 5 4 20 20 H 1.08999 * 111.00570 * 81.05700 * 19 18 5 21 21 N 1.46497 * 111.00787 * 204.91635 * 19 18 5 22 22 C 1.36936 * 120.00025 * 273.54624 * 21 19 18 23 23 H 1.08004 * 119.99721 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00275 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99901 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00234 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46868 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47274 * 119.99442 * 26 24 22 29 29 H 1.48501 * 109.46912 * 239.99581 * 26 24 22 30 30 H 1.09000 * 109.47215 * 296.85111 * 1 2 3 31 31 H 1.08989 * 109.47287 * 56.85728 * 1 2 3 32 32 H 1.09000 * 109.47014 * 176.86030 * 1 2 3 33 33 H 1.08993 * 109.99525 * 100.12285 * 4 2 1 34 34 H 1.09000 * 109.78061 * 338.95137 * 4 2 1 35 35 H 1.09000 * 113.16696 * 130.83454 * 10 8 6 36 36 H 1.08992 * 113.16752 * 1.27242 * 10 8 6 37 37 H 1.07994 * 119.92173 * 0.04637 * 12 11 10 38 38 H 1.08002 * 120.13606 * 179.97438 * 13 12 11 39 39 H 1.07997 * 119.85481 * 180.30028 * 16 14 13 40 40 H 1.09007 * 110.36891 * 143.19436 * 18 5 4 41 41 H 1.09000 * 110.37251 * 265.40916 * 18 5 4 42 42 H 0.97004 * 120.00071 * 93.54525 * 21 19 18 43 43 H 0.96995 * 119.99742 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0832 -0.7862 -1.2073 5 7 3.2495 -1.5469 -0.7354 6 6 4.0005 -2.3783 -1.4846 7 8 3.7297 -2.5524 -2.6538 8 6 5.1767 -3.0916 -0.8692 9 1 5.8213 -2.4341 -0.2859 10 6 5.9315 -3.9986 -1.8413 11 6 5.4976 -5.2030 -1.0449 12 6 5.5028 -6.5737 -0.8643 13 6 4.8240 -7.1361 0.1992 14 6 4.1334 -6.3218 1.0807 15 9 3.4633 -6.8677 2.1192 16 6 4.1334 -4.9511 0.9040 17 6 4.8138 -4.3823 -0.1652 18 6 3.4653 -1.2446 0.6912 19 6 2.0791 -0.7934 1.2151 20 1 1.4470 -1.6529 1.4382 21 7 2.2176 0.0727 2.3885 22 6 2.3130 -0.4781 3.6386 23 1 2.2858 -1.5510 3.7595 24 6 2.4437 0.3425 4.7505 25 7 2.4764 1.6501 4.6032 26 14 2.5732 -0.4088 6.4559 27 1 2.5107 -1.8888 6.3507 28 1 3.8623 -0.0102 7.0759 29 1 1.4489 0.0752 7.2967 30 1 -0.3634 0.4642 0.9169 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3633 -1.0261 -0.0563 33 1 2.3848 -0.0960 -1.9950 34 1 1.3217 -1.4701 -1.5824 35 1 7.0098 -3.8404 -1.8260 36 1 5.5207 -3.9814 -2.8507 37 1 6.0391 -7.2061 -1.5562 38 1 4.8279 -8.2070 0.3397 39 1 3.5973 -4.3197 1.5970 40 1 3.7994 -2.1363 1.2217 41 1 4.1944 -0.4421 0.8030 42 1 2.2417 1.0363 2.2800 43 1 2.5681 2.2234 5.3802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082706902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:53 Heat of formation + Delta-G solvation = -18.805333 kcal Electronic energy + Delta-G solvation = -26666.384314 eV Core-core repulsion = 22819.762918 eV Total energy + Delta-G solvation = -3846.621397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.97189 -42.18965 -40.55424 -38.91154 -36.09168 -35.87750 -33.98323 -32.54446 -31.87861 -29.22929 -28.97856 -27.64260 -26.00550 -25.55515 -23.63678 -22.97044 -21.84035 -21.30161 -20.13026 -19.12645 -18.63873 -18.24321 -17.63243 -17.36926 -16.88586 -16.60436 -16.19806 -16.15739 -15.86283 -15.37520 -15.03869 -14.73802 -14.65600 -14.51627 -14.42149 -14.18299 -13.97898 -13.49378 -13.23140 -13.11883 -13.00147 -12.92236 -12.87513 -12.70584 -12.23175 -12.20180 -12.14031 -12.01932 -11.76367 -11.70853 -11.42441 -11.15746 -10.96773 -10.02665 -9.74832 -9.54072 -9.05998 -7.96387 -5.25681 -0.00046 0.11985 1.38625 1.47087 1.49221 1.57337 1.87506 2.47299 2.54990 2.85029 3.11509 3.29905 3.35645 3.43359 3.49243 3.73853 3.79644 3.90796 3.92677 4.13866 4.17159 4.29457 4.32875 4.44240 4.47936 4.53829 4.60368 4.66215 4.79476 4.84386 4.86933 4.91064 4.97327 5.05070 5.07861 5.09182 5.13693 5.18541 5.31347 5.43014 5.53396 5.54867 5.81580 6.24953 6.41278 6.98519 7.33415 8.03572 8.28676 9.26439 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.004513 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.473731 B = 6203.328141 C = 8008.587470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 H 0.083 0.917 4 C 0.118 3.882 5 N -0.608 5.608 6 C 0.544 3.456 7 O -0.570 6.570 8 C -0.071 4.071 9 H 0.141 0.859 10 C -0.041 4.041 11 C -0.128 4.128 12 C -0.060 4.060 13 C -0.136 4.136 14 C 0.077 3.923 15 F -0.148 7.148 16 C -0.142 4.142 17 C -0.112 4.112 18 C 0.086 3.914 19 C 0.171 3.829 20 H 0.056 0.944 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.074 0.926 24 C -0.063 4.063 25 N -0.963 5.963 26 Si 0.962 3.038 27 H -0.269 1.269 28 H -0.294 1.294 29 H -0.295 1.295 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.378 0.622 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -13.458 -13.717 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 H 0.101 0.899 4 C -0.004 4.004 5 N -0.340 5.340 6 C 0.333 3.667 7 O -0.450 6.450 8 C -0.091 4.091 9 H 0.158 0.842 10 C -0.077 4.077 11 C -0.128 4.128 12 C -0.078 4.078 13 C -0.155 4.155 14 C 0.058 3.942 15 F -0.127 7.127 16 C -0.161 4.161 17 C -0.113 4.113 18 C -0.040 4.040 19 C 0.060 3.940 20 H 0.074 0.926 21 N -0.357 5.357 22 C -0.372 4.372 23 H 0.092 0.908 24 C -0.256 4.256 25 N -0.613 5.613 26 Si 0.792 3.208 27 H -0.194 1.194 28 H -0.221 1.221 29 H -0.222 1.222 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.120 0.880 37 H 0.186 0.814 38 H 0.186 0.814 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.211 0.789 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.075 -13.747 -14.166 20.654 hybrid contribution -0.348 0.398 1.832 1.907 sum 5.727 -13.349 -12.334 19.055 Atomic orbital electron populations 1.21621 0.92705 1.02155 1.02215 1.22397 0.97440 0.99332 0.93070 0.89850 1.22025 0.87294 0.94473 0.96638 1.48495 1.29953 1.43672 1.11911 1.19971 0.83277 0.78136 0.85338 1.90649 1.71869 1.65134 1.17391 1.21481 0.95536 0.94371 0.97742 0.84152 1.21471 1.02224 0.85952 0.98080 1.22073 0.98565 0.94383 0.97788 1.20373 0.97993 0.92381 0.97024 1.21390 0.98052 1.01544 0.94478 1.17608 0.97455 0.91302 0.87865 1.91490 1.78708 1.85969 1.56513 1.20610 1.02205 0.93714 0.99609 1.21725 0.98459 0.96047 0.95044 1.23197 1.01192 1.00544 0.79045 1.21466 0.92658 0.93350 0.86481 0.92603 1.42358 1.87089 1.05100 1.01196 1.19556 1.40823 0.91990 0.84785 0.90782 1.25404 1.03423 0.95712 1.01065 1.69792 1.58721 1.03095 1.29709 0.85243 0.76674 0.78005 0.80860 1.19400 1.22072 1.22217 0.93244 0.90593 0.92413 0.90670 0.91182 0.85291 0.87986 0.81409 0.81387 0.86281 0.91280 0.91453 0.78867 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.17 71.98 0.66 -2.82 16 2 C -0.10 -3.05 3.15 -9.60 -0.03 -3.08 16 3 H 0.08 2.54 8.00 -2.38 -0.02 2.52 16 4 C 0.12 3.31 6.48 86.73 0.56 3.87 16 5 N -0.61 -18.25 3.33 -811.81 -2.70 -20.95 16 6 C 0.54 16.19 7.41 87.66 0.65 16.84 16 7 O -0.57 -19.65 16.05 -3.02 -0.05 -19.70 16 8 C -0.07 -1.67 3.43 -12.09 -0.04 -1.71 16 9 H 0.14 2.88 8.07 -2.39 -0.02 2.86 16 10 C -0.04 -0.75 7.54 27.49 0.21 -0.54 16 11 C -0.13 -2.64 7.59 -19.81 -0.15 -2.79 16 12 C -0.06 -1.00 10.03 22.25 0.22 -0.78 16 13 C -0.14 -2.54 10.04 22.30 0.22 -2.32 16 14 C 0.08 1.95 7.29 22.31 0.16 2.11 16 15 F -0.15 -4.13 17.26 44.97 0.78 -3.35 16 16 C -0.14 -3.96 9.91 22.42 0.22 -3.73 16 17 C -0.11 -2.84 6.57 -21.78 -0.14 -2.98 16 18 C 0.09 2.80 6.33 86.86 0.55 3.35 16 19 C 0.17 6.21 3.13 46.38 0.15 6.35 16 20 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 21 N -0.72 -33.08 5.28 -316.38 -1.67 -34.75 16 22 C -0.24 -12.44 9.98 84.03 0.84 -11.60 16 23 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 24 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 25 N -0.96 -56.03 13.06 21.65 0.28 -55.75 16 26 Si 0.96 44.58 29.55 68.60 2.03 46.60 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.93 7.78 -2.39 -0.02 1.91 16 35 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 2.10 7.04 -2.39 -0.02 2.08 16 37 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.12 3.58 7.42 -2.91 -0.02 3.56 16 40 H 0.07 2.26 6.70 -2.38 -0.02 2.24 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.38 18.76 7.71 -92.71 -0.71 18.04 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -64.83 361.22 3.53 -61.30 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.32 Total: 29.40 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 4.55 Total: -2.79 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.09 Total: -111.45 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.70 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.83 3.53 -61.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082706902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.491 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds