Wall clock time and date at job start Tue Mar 31 2020 13:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.88712 * 2 1 4 4 C 1.54910 * 111.00611 * 236.11619 * 2 1 3 5 5 N 1.47421 * 104.83091 * 204.87914 * 4 2 1 6 6 C 1.34782 * 125.64477 * 204.09481 * 5 4 2 7 7 O 1.21283 * 120.00247 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99813 * 180.02562 * 6 5 4 9 9 H 1.09005 * 112.88672 * 51.66249 * 8 6 5 10 10 C 1.52259 * 113.15653 * 183.04695 * 8 6 5 11 11 C 1.50564 * 87.23383 * 114.74171 * 10 8 6 12 12 C 1.38826 * 147.26933 * 179.49953 * 11 10 8 13 13 C 1.38031 * 120.12239 * 179.77055 * 12 11 10 14 14 C 1.38454 * 119.95940 * 0.26027 * 13 12 11 15 15 F 1.35093 * 120.03863 * 179.97438 * 14 13 12 16 16 C 1.38290 * 119.92436 * 359.97438 * 14 13 12 17 17 C 1.37740 * 92.76618 * 359.76488 * 11 10 8 18 18 C 1.47016 * 108.70722 * 24.35677 * 5 4 2 19 19 C 1.54344 * 107.26301 * 358.58351 * 18 5 4 20 20 H 1.08998 * 110.66400 * 96.52613 * 19 18 5 21 21 N 1.46506 * 110.84801 * 219.67300 * 19 18 5 22 22 C 1.36932 * 119.99732 * 268.69424 * 21 19 18 23 23 H 1.07999 * 120.00368 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99604 * 180.02562 * 22 21 19 25 25 N 1.31612 * 119.99980 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99947 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46801 * 60.00122 * 26 24 22 28 28 H 1.48495 * 109.47055 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46898 * 300.00028 * 26 24 22 30 30 H 1.09000 * 109.47183 * 182.42885 * 1 2 3 31 31 H 1.09000 * 109.46878 * 302.43395 * 1 2 3 32 32 H 1.09005 * 109.46675 * 62.42629 * 1 2 3 33 33 H 1.09005 * 110.36362 * 86.03908 * 4 2 1 34 34 H 1.08994 * 110.36719 * 323.72174 * 4 2 1 35 35 H 1.09003 * 114.02305 * 0.09436 * 10 8 6 36 36 H 1.08998 * 113.16219 * 229.27081 * 10 8 6 37 37 H 1.08002 * 119.94034 * 0.05407 * 12 11 10 38 38 H 1.07999 * 120.01810 * 180.27525 * 13 12 11 39 39 H 1.08002 * 119.96276 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.88600 * 118.12804 * 18 5 4 41 41 H 1.08996 * 109.88448 * 239.29588 * 18 5 4 42 42 H 0.96995 * 119.99911 * 88.69535 * 21 19 18 43 43 H 0.97010 * 120.00105 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7740 6 6 4.4480 -1.5599 -1.5951 7 8 4.3005 -1.4990 -2.7974 8 6 5.7718 -1.9921 -1.0193 9 1 5.6747 -2.7971 -0.2908 10 6 6.8337 -2.2422 -2.0814 11 6 7.5871 -1.0762 -1.4986 12 6 8.7169 -0.2712 -1.5526 13 6 8.8717 0.7664 -0.6555 14 6 7.9012 1.0018 0.3036 15 9 8.0513 2.0165 1.1827 16 6 6.7781 0.1969 0.3606 17 6 6.6238 -0.8464 -0.5412 18 6 3.4667 -1.2785 0.6952 19 6 2.0869 -0.8077 1.2020 20 1 1.4464 -1.6615 1.4228 21 7 2.2294 0.0498 2.3813 22 6 2.2015 -0.5002 3.6350 23 1 2.0740 -1.5659 3.7545 24 6 2.3359 0.3123 4.7525 25 7 2.4908 1.6112 4.6068 26 14 2.2971 -0.4378 6.4629 27 1 3.4031 -1.4195 6.5980 28 1 2.4596 0.6344 7.4773 29 1 0.9972 -1.1243 6.6728 30 1 -0.3633 -1.0267 0.0436 31 1 -0.3633 0.5512 0.8674 32 1 -0.3633 0.4757 -0.9110 33 1 2.1554 -0.1714 -2.0839 34 1 1.4523 -1.6702 -1.4026 35 1 6.4894 -2.0729 -3.1017 36 1 7.3453 -3.1969 -1.9597 37 1 9.4739 -0.4542 -2.3008 38 1 9.7491 1.3944 -0.7019 39 1 6.0205 0.3803 1.1082 40 1 3.6616 -2.2954 1.0357 41 1 4.2430 -0.6072 1.0621 42 1 2.3435 1.0070 2.2740 43 1 2.5844 2.1791 5.3878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082706903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:00 Heat of formation + Delta-G solvation = -18.470484 kcal Electronic energy + Delta-G solvation = -26787.581525 eV Core-core repulsion = 22940.974649 eV Total energy + Delta-G solvation = -3846.606876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.98826 -42.28669 -40.53997 -38.90217 -36.13213 -35.86109 -33.96113 -32.53232 -31.87527 -29.22870 -28.93025 -27.64448 -25.99554 -25.52258 -23.64645 -22.97796 -21.74914 -21.40813 -20.08377 -19.11167 -18.71680 -18.17707 -17.66300 -17.20291 -16.95954 -16.62121 -16.38250 -16.20904 -15.63615 -15.35469 -15.21262 -14.80245 -14.70463 -14.49682 -14.23261 -14.03984 -13.76136 -13.58633 -13.30569 -13.08700 -12.96498 -12.82960 -12.77296 -12.72033 -12.31917 -12.26671 -12.17321 -12.04832 -11.76846 -11.70034 -11.45730 -11.12052 -10.92515 -10.02499 -9.69937 -9.54795 -9.07015 -7.94556 -5.24536 0.00665 0.10042 1.41717 1.49254 1.50754 1.56746 1.91138 2.46715 2.56364 2.84488 3.18120 3.32387 3.36823 3.43209 3.49336 3.78499 3.81597 3.86842 3.92278 4.15988 4.21394 4.29112 4.33764 4.44038 4.46720 4.57353 4.61834 4.66878 4.80122 4.86603 4.88231 4.92983 5.00031 5.04785 5.09474 5.13494 5.14559 5.23207 5.31374 5.46824 5.54133 5.54696 5.81200 6.25145 6.43708 6.99886 7.33183 8.04679 8.28392 9.28156 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.004691 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.657731 B = 5967.823319 C = 7796.551664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 H 0.064 0.936 4 C 0.116 3.884 5 N -0.609 5.609 6 C 0.541 3.459 7 O -0.571 6.571 8 C -0.066 4.066 9 H 0.143 0.857 10 C -0.041 4.041 11 C -0.127 4.127 12 C -0.062 4.062 13 C -0.138 4.138 14 C 0.075 3.925 15 F -0.150 7.150 16 C -0.139 4.139 17 C -0.114 4.114 18 C 0.083 3.917 19 C 0.171 3.829 20 H 0.076 0.924 21 N -0.721 5.721 22 C -0.241 4.241 23 H 0.082 0.918 24 C -0.069 4.069 25 N -0.968 5.968 26 Si 0.967 3.033 27 H -0.278 1.278 28 H -0.301 1.301 29 H -0.276 1.276 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.373 0.627 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 -8.238 -14.541 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.126 4.126 3 H 0.082 0.918 4 C -0.006 4.006 5 N -0.340 5.340 6 C 0.330 3.670 7 O -0.451 6.451 8 C -0.087 4.087 9 H 0.160 0.840 10 C -0.077 4.077 11 C -0.127 4.127 12 C -0.080 4.080 13 C -0.156 4.156 14 C 0.056 3.944 15 F -0.129 7.129 16 C -0.158 4.158 17 C -0.115 4.115 18 C -0.043 4.043 19 C 0.061 3.939 20 H 0.094 0.906 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.100 0.900 24 C -0.261 4.261 25 N -0.618 5.618 26 Si 0.796 3.204 27 H -0.204 1.204 28 H -0.228 1.228 29 H -0.202 1.202 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.152 0.848 37 H 0.187 0.813 38 H 0.185 0.815 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.205 0.795 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.948 -8.292 -15.003 19.337 hybrid contribution -0.136 0.942 1.885 2.112 sum 8.812 -7.350 -13.118 17.429 Atomic orbital electron populations 1.21547 0.92195 1.02688 1.01925 1.22557 0.97655 0.98567 0.93861 0.91773 1.22323 0.82468 0.98756 0.97063 1.48524 1.12544 1.65300 1.07674 1.20088 0.84722 0.76578 0.85630 1.90646 1.83452 1.55651 1.15386 1.21341 0.91086 0.96524 0.99708 0.83981 1.21446 0.90696 0.96879 0.98705 1.22234 0.94860 0.98518 0.97085 1.20615 0.96805 0.92208 0.98376 1.21342 0.99464 1.00150 0.94664 1.17673 0.96884 0.88078 0.91789 1.91487 1.95785 1.57829 1.67782 1.20490 0.97933 0.96301 1.01102 1.21237 0.98257 0.95737 0.96223 1.23073 1.01699 1.01488 0.78033 1.21455 0.92473 0.93756 0.86255 0.90600 1.42472 1.86512 1.06069 1.00902 1.19592 1.40504 0.92926 0.84206 0.89988 1.25491 1.03426 0.95784 1.01418 1.69807 1.58281 1.04166 1.29553 0.85315 0.78239 0.76812 0.80014 1.20426 1.22777 1.20185 0.91299 0.93577 0.90947 0.90987 0.89431 0.87552 0.84814 0.81255 0.81529 0.86999 0.90651 0.92818 0.79457 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.30 71.98 0.67 -2.65 16 2 C -0.11 -3.25 3.27 -9.40 -0.03 -3.28 16 3 H 0.06 2.21 8.01 -2.39 -0.02 2.19 16 4 C 0.12 3.23 6.37 86.86 0.55 3.78 16 5 N -0.61 -18.34 3.33 -811.77 -2.70 -21.04 16 6 C 0.54 16.20 7.37 87.66 0.65 16.85 16 7 O -0.57 -19.67 15.92 -3.04 -0.05 -19.71 16 8 C -0.07 -1.58 3.50 -12.76 -0.04 -1.62 16 9 H 0.14 2.82 8.14 -2.38 -0.02 2.80 16 10 C -0.04 -0.75 7.66 29.37 0.22 -0.53 16 11 C -0.13 -2.77 7.42 -20.07 -0.15 -2.92 16 12 C -0.06 -1.15 10.06 22.36 0.22 -0.92 16 13 C -0.14 -2.93 10.02 22.27 0.22 -2.71 16 14 C 0.07 2.19 7.30 22.33 0.16 2.35 16 15 F -0.15 -4.92 17.27 44.97 0.78 -4.14 16 16 C -0.14 -4.41 9.83 22.41 0.22 -4.19 16 17 C -0.11 -3.10 6.82 -20.08 -0.14 -3.24 16 18 C 0.08 2.70 6.25 86.74 0.54 3.24 16 19 C 0.17 6.10 3.08 46.18 0.14 6.24 16 20 H 0.08 2.63 7.96 -2.39 -0.02 2.61 16 21 N -0.72 -33.70 5.15 -317.29 -1.64 -35.33 16 22 C -0.24 -12.44 9.96 84.03 0.84 -11.60 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 25 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 26 Si 0.97 44.56 29.55 68.60 2.03 46.58 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 29 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 30 H 0.07 1.61 8.11 -2.39 -0.02 1.59 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.07 2.04 8.04 -2.38 -0.02 2.02 16 34 H 0.09 2.11 8.04 -2.39 -0.02 2.09 16 35 H 0.11 2.18 7.01 -2.39 -0.02 2.16 16 36 H 0.13 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.11 4.07 6.77 -2.91 -0.02 4.05 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.01 6.42 -2.39 -0.02 1.99 16 42 H 0.37 19.35 7.76 -92.71 -0.72 18.63 16 43 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -66.94 360.36 3.57 -63.37 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.32 Total: 32.29 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 4.55 Total: -4.50 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.05 Total: -113.88 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.78 Total: -4.14 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.94 3.57 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082706903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.901 kcal (2) G-P(sol) polarization free energy of solvation -66.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds