Wall clock time and date at job start Tue Mar 31 2020 14:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47703 * 2 1 4 4 C 1.50707 * 109.47168 * 120.00156 * 2 1 3 5 5 O 1.21281 * 119.99966 * 101.71224 * 4 2 1 6 6 N 1.34774 * 119.99638 * 281.71618 * 4 2 1 7 7 C 1.44960 * 117.32534 * 355.29116 * 6 4 2 8 8 C 1.51974 * 111.88661 * 203.66392 * 7 6 4 9 9 O 1.41323 * 111.53067 * 319.32688 * 8 7 6 10 10 C 1.40786 * 118.39312 * 56.96003 * 9 8 7 11 11 H 1.08996 * 109.66086 * 188.46066 * 10 9 8 12 12 C 1.54202 * 110.21782 * 67.66074 * 10 9 8 13 13 N 1.46876 * 106.39227 * 210.34247 * 12 10 9 14 14 C 1.36935 * 125.36351 * 197.80949 * 13 12 10 15 15 H 1.08001 * 119.99941 * 165.44967 * 14 13 12 16 16 C 1.38813 * 120.00191 * 345.45997 * 14 13 12 17 17 N 1.31620 * 119.99595 * 332.06004 * 16 14 13 18 18 Si 1.86800 * 120.00221 * 152.06185 * 16 14 13 19 19 H 1.48494 * 109.47096 * 269.99616 * 18 16 14 20 20 H 1.48502 * 109.46793 * 30.00008 * 18 16 14 21 21 H 1.48509 * 109.46845 * 149.99400 * 18 16 14 22 22 C 1.46779 * 109.27095 * 18.07728 * 13 12 10 23 23 C 1.44541 * 117.31868 * 175.28868 * 6 4 2 24 24 H 1.09001 * 109.49223 * 287.00406 * 23 6 4 25 25 C 1.53001 * 109.47128 * 239.99590 * 2 1 3 26 26 C 1.53004 * 109.47003 * 65.00252 * 25 2 1 27 27 F 1.39897 * 109.47605 * 185.00396 * 25 2 1 28 28 F 1.39895 * 109.47252 * 305.00557 * 25 2 1 29 29 H 1.08995 * 109.47810 * 178.20507 * 1 2 3 30 30 H 1.09006 * 109.46620 * 298.20525 * 1 2 3 31 31 H 1.08998 * 109.46833 * 58.20014 * 1 2 3 32 32 H 1.08999 * 108.99987 * 83.04305 * 7 6 4 33 33 H 1.09004 * 108.93303 * 324.24117 * 7 6 4 34 34 H 1.09004 * 109.06939 * 198.80047 * 8 7 6 35 35 H 1.08995 * 109.06848 * 79.85689 * 8 7 6 36 36 H 1.08991 * 110.07473 * 91.10805 * 12 10 9 37 37 H 1.09004 * 110.11836 * 329.59812 * 12 10 9 38 38 H 0.97000 * 119.99854 * 353.01488 * 17 16 14 39 39 H 1.09003 * 109.83414 * 118.16913 * 22 13 12 40 40 H 1.09007 * 109.82751 * 239.13029 * 22 13 12 41 41 H 1.08999 * 109.46516 * 59.99998 * 26 25 2 42 42 H 1.08995 * 109.47230 * 180.02562 * 26 25 2 43 43 H 1.08999 * 109.46908 * 300.00170 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.4355 -1.8515 1.1498 6 7 2.0335 -0.0779 2.4205 7 6 1.6383 1.3168 2.4332 8 6 2.2056 2.0555 3.6340 9 8 2.1437 1.2667 4.8049 10 6 2.7735 0.0076 4.7980 11 1 2.5139 -0.5374 5.7055 12 6 4.3039 0.1777 4.7153 13 7 4.8138 -0.9994 4.0000 14 6 6.1146 -1.4272 4.0037 15 1 6.3581 -2.4185 3.6509 16 6 7.1203 -0.5868 4.4612 17 7 6.9781 0.7187 4.3723 18 14 8.6753 -1.3086 5.2030 19 1 8.4929 -1.4782 6.6669 20 1 8.9530 -2.6288 4.5824 21 1 9.8162 -0.3925 4.9491 22 6 3.7105 -1.6414 3.2753 23 6 2.4286 -0.8457 3.5796 24 1 1.6352 -1.5464 3.8395 25 6 2.0400 -0.7213 -1.2492 26 6 1.6352 0.0688 -2.4953 27 9 3.4342 -0.8219 -1.1932 28 9 1.4821 -2.0029 -1.3081 29 1 -0.3634 -1.0271 -0.0322 30 1 -0.3633 0.4857 0.9057 31 1 -0.3633 0.5415 -0.8734 32 1 0.5503 1.3770 2.4610 33 1 1.9965 1.7942 1.5211 34 1 1.6353 2.9711 3.7909 35 1 3.2452 2.3149 3.4339 36 1 4.7303 0.2201 5.7175 37 1 4.5511 1.0857 4.1653 38 1 6.2196 1.0927 3.8972 39 1 3.9126 -1.6254 2.2043 40 1 3.5940 -2.6705 3.6154 41 1 2.0699 1.0673 -2.4494 42 1 1.9981 -0.4453 -3.3853 43 1 0.5489 0.1471 -2.5390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083196290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:17 Heat of formation + Delta-G solvation = -127.241959 kcal Electronic energy + Delta-G solvation = -29624.466249 eV Core-core repulsion = 25342.373463 eV Total energy + Delta-G solvation = -4282.092786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.87043 -46.84089 -41.04126 -38.69520 -36.29562 -35.16875 -34.65814 -32.52138 -30.12075 -30.02389 -28.07079 -27.53049 -25.63562 -24.53473 -23.43505 -22.29595 -20.69363 -19.90915 -18.77217 -17.97246 -17.58545 -17.26611 -17.05110 -16.51648 -16.04575 -15.76698 -15.15270 -14.89658 -14.53382 -14.44969 -14.00631 -13.80871 -13.64453 -13.42414 -13.25809 -13.07539 -12.99033 -12.92101 -12.59797 -12.52859 -12.25775 -12.18071 -12.02552 -11.91043 -11.54288 -11.06521 -10.97658 -10.86123 -10.68278 -10.61725 -10.30416 -9.99015 -9.79416 -9.31762 -9.13073 -8.49185 -8.29008 -6.87751 -6.03196 -3.09185 2.58564 2.81187 3.55731 3.57748 3.58048 3.74370 3.80977 3.88751 4.11061 4.21101 4.54655 4.64101 4.66095 4.71850 4.77678 4.92943 4.97578 5.11253 5.19473 5.21816 5.31395 5.34312 5.37505 5.44824 5.48815 5.57453 5.61270 5.67778 5.72792 5.80673 5.90791 6.01378 6.39952 6.75463 6.85946 6.90069 7.12847 7.29698 7.56908 7.84925 8.20146 8.53294 9.06752 9.85955 10.37015 11.26547 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.004951 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.114212 B = 5653.918794 C = 6681.095671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.160 4.160 3 H 0.120 0.880 4 C 0.510 3.490 5 O -0.502 6.502 6 N -0.586 5.586 7 C 0.075 3.925 8 C 0.056 3.944 9 O -0.368 6.368 10 C 0.081 3.919 11 H 0.118 0.882 12 C 0.120 3.880 13 N -0.600 5.600 14 C -0.329 4.329 15 H 0.068 0.932 16 C -0.028 4.028 17 N -0.920 5.920 18 Si 1.067 2.933 19 H -0.293 1.293 20 H -0.292 1.292 21 H -0.291 1.291 22 C 0.120 3.880 23 C 0.112 3.888 24 H 0.074 0.926 25 C 0.307 3.693 26 C -0.195 4.195 27 F -0.191 7.191 28 F -0.189 7.189 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.301 4.831 -9.730 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 H 0.138 0.862 4 C 0.297 3.703 5 O -0.376 6.376 6 N -0.321 5.321 7 C -0.049 4.049 8 C -0.021 4.021 9 O -0.285 6.285 10 C 0.022 3.978 11 H 0.136 0.864 12 C -0.006 4.006 13 N -0.329 5.329 14 C -0.457 4.457 15 H 0.086 0.914 16 C -0.229 4.229 17 N -0.562 5.562 18 Si 0.897 3.103 19 H -0.221 1.221 20 H -0.219 1.219 21 H -0.217 1.217 22 C -0.005 4.005 23 C 0.008 3.992 24 H 0.092 0.908 25 C 0.270 3.730 26 C -0.252 4.252 27 F -0.172 7.172 28 F -0.170 7.170 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.632 4.576 -8.813 18.520 hybrid contribution -1.138 -0.481 -1.055 1.624 sum -16.770 4.095 -9.867 19.884 Atomic orbital electron populations 1.21789 0.90337 1.04285 1.03693 1.22557 1.00240 1.02285 0.93081 0.86234 1.20130 0.78990 0.87160 0.84062 1.90764 1.43905 1.17881 1.85083 1.46610 1.67124 1.10913 1.07425 1.21768 1.00020 0.82225 1.00851 1.22284 1.01761 0.93572 0.84529 1.86867 1.76507 1.29600 1.35519 1.22739 0.94913 0.83100 0.97075 0.86450 1.21868 0.89364 0.91913 0.97467 1.44358 1.04728 1.30045 1.53782 1.19821 0.82007 0.99052 1.44776 0.91394 1.25721 1.01221 0.94683 1.01235 1.70774 1.31123 1.11289 1.43050 0.83486 0.75671 0.74575 0.76585 1.22090 1.21867 1.21699 1.21902 0.85383 0.94580 0.98637 1.21617 0.98497 0.93291 0.85774 0.90799 1.20637 0.75460 0.80843 0.96037 1.22832 1.04411 1.01683 0.96323 1.93082 1.30270 1.96435 1.97393 1.93027 1.84815 1.41861 1.97300 0.90769 0.90637 0.90535 0.91276 0.90001 0.87473 0.92181 0.92874 0.94971 0.92223 0.91577 0.94710 0.89194 0.89670 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.66 37.16 0.32 -0.85 16 2 C -0.16 -1.86 1.67 -91.77 -0.15 -2.01 16 3 H 0.12 1.10 6.14 -51.93 -0.32 0.78 16 4 C 0.51 8.54 5.95 -10.98 -0.07 8.47 16 5 O -0.50 -10.56 12.05 5.56 0.07 -10.50 16 6 N -0.59 -9.46 3.09 -168.99 -0.52 -9.98 16 7 C 0.07 0.89 5.47 -5.39 -0.03 0.86 16 8 C 0.06 0.74 6.74 36.64 0.25 0.99 16 9 O -0.37 -6.11 10.25 -34.36 -0.35 -6.46 16 10 C 0.08 1.52 3.92 -26.26 -0.10 1.42 16 11 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 12 C 0.12 2.88 5.00 -3.21 -0.02 2.86 16 13 N -0.60 -16.11 3.31 -171.41 -0.57 -16.68 16 14 C -0.33 -9.80 10.01 -15.06 -0.15 -9.95 16 15 H 0.07 2.05 7.97 -52.49 -0.42 1.64 16 16 C -0.03 -0.82 5.14 -17.43 -0.09 -0.91 16 17 N -0.92 -28.50 12.93 55.49 0.72 -27.78 16 18 Si 1.07 26.39 30.00 -169.99 -5.10 21.29 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C 0.12 2.84 6.04 -3.42 -0.02 2.82 16 23 C 0.11 2.11 3.36 -68.66 -0.23 1.88 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 C 0.31 3.99 1.52 -26.73 -0.04 3.95 16 26 C -0.19 -1.53 9.14 37.16 0.34 -1.19 16 27 F -0.19 -3.30 16.29 2.25 0.04 -3.26 16 28 F -0.19 -2.90 15.35 2.25 0.03 -2.86 16 29 H 0.07 0.71 7.63 -51.93 -0.40 0.32 16 30 H 0.07 0.54 6.48 -51.93 -0.34 0.21 16 31 H 0.08 0.40 6.65 -51.93 -0.35 0.05 16 32 H 0.07 0.63 6.93 -51.93 -0.36 0.27 16 33 H 0.08 0.79 5.94 -51.93 -0.31 0.49 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 36 H 0.05 1.39 8.08 -51.93 -0.42 0.97 16 37 H 0.03 0.83 4.73 -51.93 -0.25 0.59 16 38 H 0.27 8.25 5.82 -40.82 -0.24 8.01 16 39 H 0.07 1.73 5.15 -51.93 -0.27 1.47 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.50 6.60 -51.93 -0.34 0.16 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -37.08 330.90 -6.37 -43.45 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.68 Total: -0.55 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 0.01 Total: 8.34 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.37 Total: -54.43 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.29 Total: -16.96 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.07 Total: -6.12 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -5.10 Total: 21.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.08 -6.37 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083196290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.797 kcal (2) G-P(sol) polarization free energy of solvation -37.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds