Wall clock time and date at job start Tue Mar 31 2020 14:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47703 * 2 1 4 4 C 1.50707 * 109.47168 * 120.00156 * 2 1 3 5 5 O 1.21281 * 119.99966 * 101.71224 * 4 2 1 6 6 N 1.34774 * 119.99638 * 281.71618 * 4 2 1 7 7 C 1.44960 * 117.32534 * 355.29116 * 6 4 2 8 8 C 1.51974 * 111.88661 * 203.66392 * 7 6 4 9 9 O 1.41323 * 111.53067 * 319.32688 * 8 7 6 10 10 C 1.40786 * 118.39312 * 56.96003 * 9 8 7 11 11 H 1.08996 * 109.66086 * 188.46066 * 10 9 8 12 12 C 1.54202 * 110.21782 * 67.66074 * 10 9 8 13 13 N 1.46876 * 106.39227 * 210.34247 * 12 10 9 14 14 C 1.36935 * 125.36351 * 197.80949 * 13 12 10 15 15 H 1.08001 * 119.99941 * 165.44967 * 14 13 12 16 16 C 1.38813 * 120.00191 * 345.45997 * 14 13 12 17 17 N 1.31620 * 119.99595 * 332.06004 * 16 14 13 18 18 Si 1.86800 * 120.00221 * 152.06185 * 16 14 13 19 19 H 1.48494 * 109.47096 * 269.99616 * 18 16 14 20 20 H 1.48502 * 109.46793 * 30.00008 * 18 16 14 21 21 H 1.48509 * 109.46845 * 149.99400 * 18 16 14 22 22 C 1.46779 * 109.27095 * 18.07728 * 13 12 10 23 23 C 1.44541 * 117.31868 * 175.28868 * 6 4 2 24 24 H 1.09001 * 109.49223 * 287.00406 * 23 6 4 25 25 C 1.53001 * 109.47128 * 239.99590 * 2 1 3 26 26 C 1.53004 * 109.47003 * 65.00252 * 25 2 1 27 27 F 1.39897 * 109.47605 * 185.00396 * 25 2 1 28 28 F 1.39895 * 109.47252 * 305.00557 * 25 2 1 29 29 H 1.08995 * 109.47810 * 178.20507 * 1 2 3 30 30 H 1.09006 * 109.46620 * 298.20525 * 1 2 3 31 31 H 1.08998 * 109.46833 * 58.20014 * 1 2 3 32 32 H 1.08999 * 108.99987 * 83.04305 * 7 6 4 33 33 H 1.09004 * 108.93303 * 324.24117 * 7 6 4 34 34 H 1.09004 * 109.06939 * 198.80047 * 8 7 6 35 35 H 1.08995 * 109.06848 * 79.85689 * 8 7 6 36 36 H 1.08991 * 110.07473 * 91.10805 * 12 10 9 37 37 H 1.09004 * 110.11836 * 329.59812 * 12 10 9 38 38 H 0.97000 * 119.99854 * 353.01488 * 17 16 14 39 39 H 1.09003 * 109.83414 * 118.16913 * 22 13 12 40 40 H 1.09007 * 109.82751 * 239.13029 * 22 13 12 41 41 H 1.08999 * 109.46516 * 59.99998 * 26 25 2 42 42 H 1.08995 * 109.47230 * 180.02562 * 26 25 2 43 43 H 1.08999 * 109.46908 * 300.00170 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.4355 -1.8515 1.1498 6 7 2.0335 -0.0779 2.4205 7 6 1.6383 1.3168 2.4332 8 6 2.2056 2.0555 3.6340 9 8 2.1437 1.2667 4.8049 10 6 2.7735 0.0076 4.7980 11 1 2.5139 -0.5374 5.7055 12 6 4.3039 0.1777 4.7153 13 7 4.8138 -0.9994 4.0000 14 6 6.1146 -1.4272 4.0037 15 1 6.3581 -2.4185 3.6509 16 6 7.1203 -0.5868 4.4612 17 7 6.9781 0.7187 4.3723 18 14 8.6753 -1.3086 5.2030 19 1 8.4929 -1.4782 6.6669 20 1 8.9530 -2.6288 4.5824 21 1 9.8162 -0.3925 4.9491 22 6 3.7105 -1.6414 3.2753 23 6 2.4286 -0.8457 3.5796 24 1 1.6352 -1.5464 3.8395 25 6 2.0400 -0.7213 -1.2492 26 6 1.6352 0.0688 -2.4953 27 9 3.4342 -0.8219 -1.1932 28 9 1.4821 -2.0029 -1.3081 29 1 -0.3634 -1.0271 -0.0322 30 1 -0.3633 0.4857 0.9057 31 1 -0.3633 0.5415 -0.8734 32 1 0.5503 1.3770 2.4610 33 1 1.9965 1.7942 1.5211 34 1 1.6353 2.9711 3.7909 35 1 3.2452 2.3149 3.4339 36 1 4.7303 0.2201 5.7175 37 1 4.5511 1.0857 4.1653 38 1 6.2196 1.0927 3.8972 39 1 3.9126 -1.6254 2.2043 40 1 3.5940 -2.6705 3.6154 41 1 2.0699 1.0673 -2.4494 42 1 1.9981 -0.4453 -3.3853 43 1 0.5489 0.1471 -2.5390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083196290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:16 Heat of formation + Delta-G solvation = -154.780889 kcal Electronic energy + Delta-G solvation = -29625.660427 eV Core-core repulsion = 25342.373463 eV Total energy + Delta-G solvation = -4283.286964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.96089 -47.97553 -42.40070 -40.07004 -38.00060 -36.43619 -35.78689 -34.38987 -31.70849 -30.87544 -29.75910 -29.04847 -26.73838 -26.20709 -24.81541 -23.57340 -22.31984 -21.26280 -20.17021 -19.78049 -18.81490 -18.53885 -18.38427 -17.68330 -17.27229 -17.04362 -16.40294 -16.28523 -16.04442 -15.92095 -15.62778 -15.30882 -15.01394 -14.80391 -14.49786 -14.40045 -14.21978 -13.99745 -13.78395 -13.59713 -13.48470 -13.23358 -13.04132 -12.99396 -12.78024 -12.73526 -12.55888 -12.47297 -12.29356 -11.94591 -11.87678 -11.79067 -11.70950 -10.95012 -10.64032 -10.51330 -9.71639 -9.10130 -8.40062 -5.43585 1.35960 1.52039 1.59445 1.62435 1.78845 2.52256 2.60896 2.67072 2.97826 3.08752 3.14597 3.31355 3.36782 3.50765 3.55313 3.68653 3.84653 3.88618 4.01095 4.02897 4.11655 4.16261 4.27514 4.36256 4.57047 4.58679 4.67515 4.72338 4.76211 4.78004 4.85866 4.87554 4.93406 5.01145 5.05040 5.21813 5.46628 5.55596 6.04581 6.17315 6.28060 6.79282 6.96866 7.60497 8.13344 8.88328 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.004951 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.114212 B = 5653.918794 C = 6681.095671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.150 4.150 3 H 0.151 0.849 4 C 0.497 3.503 5 O -0.559 6.559 6 N -0.591 5.591 7 C 0.067 3.933 8 C 0.046 3.954 9 O -0.366 6.366 10 C 0.102 3.898 11 H 0.133 0.867 12 C 0.127 3.873 13 N -0.619 5.619 14 C -0.351 4.351 15 H 0.052 0.948 16 C -0.074 4.074 17 N -0.939 5.939 18 Si 1.120 2.880 19 H -0.278 1.278 20 H -0.277 1.277 21 H -0.288 1.288 22 C 0.121 3.879 23 C 0.125 3.875 24 H 0.091 0.909 25 C 0.283 3.717 26 C -0.184 4.184 27 F -0.226 7.226 28 F -0.210 7.210 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.157 0.843 35 H 0.029 0.971 36 H 0.022 0.978 37 H 0.013 0.987 38 H 0.254 0.746 39 H 0.039 0.961 40 H 0.021 0.979 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.882 6.933 -10.298 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 H 0.168 0.832 4 C 0.286 3.714 5 O -0.437 6.437 6 N -0.324 5.324 7 C -0.054 4.054 8 C -0.031 4.031 9 O -0.283 6.283 10 C 0.042 3.958 11 H 0.151 0.849 12 C 0.001 3.999 13 N -0.348 5.348 14 C -0.479 4.479 15 H 0.070 0.930 16 C -0.269 4.269 17 N -0.582 5.582 18 Si 0.944 3.056 19 H -0.205 1.205 20 H -0.203 1.203 21 H -0.214 1.214 22 C -0.004 4.004 23 C 0.020 3.980 24 H 0.109 0.891 25 C 0.247 3.753 26 C -0.241 4.241 27 F -0.207 7.207 28 F -0.191 7.191 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.174 0.826 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.030 0.970 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.266 6.717 -9.392 21.610 hybrid contribution -0.334 -1.111 -0.930 1.487 sum -18.600 5.606 -10.322 21.998 Atomic orbital electron populations 1.21879 0.87054 1.04039 1.06530 1.22697 1.02653 1.02488 0.89311 0.83206 1.21175 0.77860 0.86883 0.85483 1.90736 1.46379 1.20620 1.85968 1.46785 1.66634 1.12576 1.06435 1.22192 1.02672 0.79405 1.01179 1.22682 1.01129 0.94996 0.84247 1.86887 1.75394 1.28529 1.37464 1.22438 0.90939 0.84628 0.97771 0.84930 1.21786 0.93204 0.90060 0.94838 1.44583 1.04621 1.30894 1.54682 1.20019 0.83995 0.98612 1.45314 0.93013 1.27218 1.04283 0.94428 1.01013 1.70885 1.31126 1.12094 1.44129 0.82797 0.71910 0.74444 0.76469 1.20479 1.20266 1.21396 1.21875 0.87181 0.94810 0.96543 1.21312 0.96233 0.93556 0.86948 0.89091 1.21577 0.73705 0.80714 0.99347 1.22873 1.06519 1.01566 0.93179 1.93010 1.33384 1.96604 1.97721 1.92979 1.84879 1.43677 1.97549 0.92695 0.88851 0.86494 0.86740 0.87393 0.82555 0.95308 0.95948 0.96964 0.93534 0.94362 0.96124 0.87017 0.89866 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.66 71.98 0.62 -1.02 16 2 C -0.15 -3.10 1.67 -11.54 -0.02 -3.12 16 3 H 0.15 2.12 6.14 -2.39 -0.01 2.10 16 4 C 0.50 16.39 5.95 87.66 0.52 16.91 16 5 O -0.56 -24.57 12.05 -3.03 -0.04 -24.61 16 6 N -0.59 -18.20 3.09 -806.96 -2.49 -20.69 16 7 C 0.07 1.32 5.47 86.33 0.47 1.79 16 8 C 0.05 1.09 6.74 71.64 0.48 1.57 16 9 O -0.37 -11.36 10.25 -145.86 -1.49 -12.86 16 10 C 0.10 3.79 3.92 30.90 0.12 3.91 16 11 H 0.13 4.51 8.14 -2.39 -0.02 4.49 16 12 C 0.13 6.33 5.00 86.71 0.43 6.77 16 13 N -0.62 -34.93 3.31 -696.21 -2.30 -37.23 16 14 C -0.35 -21.93 10.01 84.03 0.84 -21.08 16 15 H 0.05 3.31 7.97 -2.91 -0.02 3.28 16 16 C -0.07 -4.49 5.14 84.86 0.44 -4.05 16 17 N -0.94 -60.04 12.93 21.65 0.28 -59.76 16 18 Si 1.12 54.28 30.00 68.60 2.06 56.34 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 C 0.12 6.02 6.04 86.63 0.52 6.55 16 23 C 0.12 4.68 3.36 45.56 0.15 4.83 16 24 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 25 C 0.28 7.06 1.52 30.60 0.05 7.11 16 26 C -0.18 -2.31 9.14 71.98 0.66 -1.65 16 27 F -0.23 -8.06 16.29 44.97 0.73 -7.33 16 28 F -0.21 -6.50 15.35 44.97 0.69 -5.80 16 29 H 0.05 0.91 7.63 -2.39 -0.02 0.89 16 30 H 0.09 0.80 6.48 -2.38 -0.02 0.79 16 31 H 0.12 0.48 6.65 -2.39 -0.02 0.47 16 32 H 0.11 1.35 6.93 -2.39 -0.02 1.33 16 33 H 0.11 1.59 5.94 -2.38 -0.01 1.57 16 34 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.03 0.87 6.73 -2.39 -0.02 0.85 16 36 H 0.02 1.22 8.08 -2.39 -0.02 1.20 16 37 H 0.01 0.68 4.73 -2.39 -0.01 0.67 16 38 H 0.25 16.46 5.82 -92.71 -0.54 15.92 16 39 H 0.04 2.15 5.15 -2.39 -0.01 2.14 16 40 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.12 0.74 6.60 -2.39 -0.02 0.72 16 Total: -1.00 -89.70 330.90 4.00 -85.71 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.27 Total: 7.72 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.29 Total: 18.52 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -4.52 Total: -117.68 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.53 Total: -37.47 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 1.42 Total: -13.13 kcal Atomic # 14 Polarization: 54.28 SS G_CDS: 2.06 Total: 56.34 kcal Total: -89.70 4.00 -85.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083196290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.074 kcal (2) G-P(sol) polarization free energy of solvation -89.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds