Wall clock time and date at job start Tue Mar 31 2020 14:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47359 * 2 1 4 4 C 1.50694 * 109.47583 * 239.99197 * 2 1 3 5 5 O 1.21275 * 120.00366 * 258.92398 * 4 2 1 6 6 N 1.34780 * 119.99866 * 78.92675 * 4 2 1 7 7 C 1.44964 * 117.33993 * 357.35885 * 6 4 2 8 8 C 1.51960 * 111.93781 * 203.76444 * 7 6 4 9 9 O 1.41319 * 111.60278 * 319.68231 * 8 7 6 10 10 C 1.40299 * 117.97360 * 57.07032 * 9 8 7 11 11 H 1.08995 * 108.36192 * 187.78877 * 10 9 8 12 12 C 1.53910 * 110.52581 * 67.77569 * 10 9 8 13 13 N 1.46781 * 107.62993 * 220.90726 * 12 10 9 14 14 C 1.36938 * 125.36505 * 178.77951 * 13 12 10 15 15 H 1.07996 * 119.99979 * 180.02562 * 14 13 12 16 16 C 1.38812 * 119.99812 * 0.02579 * 14 13 12 17 17 N 1.31615 * 120.00048 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99639 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47372 * 59.99366 * 18 16 14 20 20 H 1.48507 * 109.46901 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46734 * 299.99041 * 18 16 14 22 22 C 1.46868 * 109.27028 * 358.79810 * 13 12 10 23 23 C 1.44547 * 117.34030 * 177.33960 * 6 4 2 24 24 H 1.08997 * 109.64163 * 285.96954 * 23 6 4 25 25 C 1.52999 * 109.46918 * 119.99303 * 2 1 3 26 26 C 1.53004 * 109.47321 * 295.00226 * 25 2 1 27 27 F 1.39901 * 109.47386 * 55.00113 * 25 2 1 28 28 F 1.39899 * 109.47384 * 175.00510 * 25 2 1 29 29 H 1.09001 * 109.46551 * 66.80929 * 1 2 3 30 30 H 1.09002 * 109.46810 * 186.80328 * 1 2 3 31 31 H 1.08997 * 109.47609 * 306.81037 * 1 2 3 32 32 H 1.09003 * 108.98473 * 324.39931 * 7 6 4 33 33 H 1.09003 * 108.98493 * 83.20938 * 7 6 4 34 34 H 1.08994 * 109.05226 * 80.23188 * 8 7 6 35 35 H 1.09003 * 109.05303 * 199.13992 * 8 7 6 36 36 H 1.08997 * 109.83084 * 101.37991 * 12 10 9 37 37 H 1.09005 * 109.82431 * 340.42649 * 12 10 9 38 38 H 0.97005 * 119.99999 * 180.02562 * 17 16 14 39 39 H 1.09004 * 110.06510 * 137.03280 * 22 13 12 40 40 H 1.09006 * 110.06839 * 258.49825 * 22 13 12 41 41 H 1.09002 * 109.46658 * 60.00193 * 26 25 2 42 42 H 1.09004 * 109.47446 * 179.97438 * 26 25 2 43 43 H 1.09000 * 109.47284 * 300.00125 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.4248 -1.8553 -1.1517 6 7 2.0457 -0.0737 -2.4181 7 6 1.5095 1.2726 -2.4577 8 6 1.0455 1.6580 -3.8525 9 8 1.9378 1.1928 -4.8447 10 6 2.2057 -0.1834 -4.8958 11 1 3.0075 -0.3507 -5.6150 12 6 0.9519 -0.9615 -5.3333 13 7 0.8731 -2.1756 -4.5122 14 6 -0.1177 -3.1181 -4.5842 15 1 -0.0899 -3.9814 -3.9358 16 6 -1.1577 -2.9640 -5.4905 17 7 -1.1918 -1.9117 -6.2803 18 14 -2.5096 -4.2494 -5.5881 19 1 -3.1917 -4.3513 -4.2730 20 1 -3.4945 -3.8540 -6.6269 21 1 -1.9174 -5.5645 -5.9419 22 6 2.0241 -2.2200 -3.6010 23 6 2.5939 -0.7885 -3.5485 24 1 3.6799 -0.8294 -3.4645 25 6 2.0399 -0.7211 1.2493 26 6 1.6351 0.0692 2.4954 27 9 1.4821 -2.0027 1.3084 28 9 3.4342 -0.8215 1.1935 29 1 -0.3632 0.4047 -0.9447 30 1 -0.3633 -1.0205 0.1217 31 1 -0.3634 0.6157 0.8227 32 1 0.6647 1.3381 -1.7721 33 1 2.2818 1.9715 -2.1363 34 1 0.0597 1.2286 -4.0308 35 1 0.9763 2.7439 -3.9171 36 1 1.0332 -1.2319 -6.3861 37 1 0.0635 -0.3500 -5.1751 38 1 -1.9188 -1.8038 -6.9134 39 1 1.7024 -2.5312 -2.6071 40 1 2.7771 -2.9094 -3.9829 41 1 0.5488 0.1473 2.5389 42 1 1.9980 -0.4448 3.3855 43 1 2.0697 1.0677 2.4494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083196291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:21 Heat of formation + Delta-G solvation = -123.236982 kcal Electronic energy + Delta-G solvation = -29716.511543 eV Core-core repulsion = 25434.592426 eV Total energy + Delta-G solvation = -4281.919117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.86095 -46.83174 -40.90557 -38.54689 -36.06154 -35.06703 -34.47674 -32.32461 -30.14602 -29.91685 -27.97777 -27.38614 -25.52123 -24.55585 -23.36093 -22.21848 -20.70557 -19.76605 -18.58404 -17.78829 -17.43848 -16.97157 -16.72760 -16.49973 -15.94915 -15.33235 -15.13380 -15.06770 -14.69289 -14.21933 -13.92584 -13.84295 -13.50542 -13.41391 -13.13945 -12.96980 -12.89212 -12.70776 -12.45799 -12.24479 -12.11047 -12.00116 -11.92742 -11.67967 -11.27635 -11.09119 -10.90664 -10.83493 -10.62471 -10.60988 -10.40403 -10.09804 -9.69756 -9.34697 -8.85324 -8.57268 -8.22652 -6.77670 -5.69387 -3.02199 2.69545 2.95355 3.42304 3.46197 3.47973 3.64533 3.90587 4.07748 4.19473 4.28888 4.52028 4.67831 4.83117 4.84351 4.87337 5.05219 5.13915 5.20728 5.28607 5.40188 5.42201 5.49829 5.51991 5.54922 5.60987 5.68602 5.73205 5.85917 5.96447 6.04970 6.06831 6.29838 6.52266 6.85285 7.18671 7.39407 7.46700 7.54772 7.74430 7.89296 8.26163 8.34312 9.24641 9.84873 10.48470 11.42004 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.005225 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.090028 B = 5357.737220 C = 6327.144473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.156 4.156 3 H 0.117 0.883 4 C 0.512 3.488 5 O -0.506 6.506 6 N -0.580 5.580 7 C 0.069 3.931 8 C 0.056 3.944 9 O -0.368 6.368 10 C 0.068 3.932 11 H 0.109 0.891 12 C 0.153 3.847 13 N -0.601 5.601 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.010 4.010 17 N -0.926 5.926 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.109 3.891 23 C 0.111 3.889 24 H 0.072 0.928 25 C 0.308 3.692 26 C -0.195 4.195 27 F -0.186 7.186 28 F -0.197 7.197 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.252 0.748 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 11.754 14.014 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 H 0.135 0.865 4 C 0.298 3.702 5 O -0.382 6.382 6 N -0.314 5.314 7 C -0.054 4.054 8 C -0.021 4.021 9 O -0.285 6.285 10 C 0.009 3.991 11 H 0.127 0.873 12 C 0.028 3.972 13 N -0.329 5.329 14 C -0.349 4.349 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.574 5.574 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.017 4.017 23 C 0.007 3.993 24 H 0.090 0.910 25 C 0.272 3.728 26 C -0.252 4.252 27 F -0.167 7.167 28 F -0.178 7.178 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.043 0.957 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.129 11.216 13.737 18.461 hybrid contribution -0.775 -0.832 -0.040 1.138 sum 4.354 10.384 13.696 17.731 Atomic orbital electron populations 1.21910 0.90262 1.04800 1.03808 1.22498 1.00410 1.01920 0.93043 0.86492 1.20093 0.79145 0.86713 0.84205 1.90678 1.46251 1.16455 1.84770 1.46510 1.61564 1.14922 1.08382 1.21864 0.99390 0.83627 1.00570 1.22218 0.94359 0.99707 0.85799 1.86829 1.64975 1.23364 1.53300 1.22896 1.00624 0.81110 0.94507 0.87344 1.21667 0.92538 0.87551 0.95466 1.44222 1.24297 1.23436 1.40918 1.19024 0.99312 0.99985 1.16586 0.90471 1.24769 0.98884 0.98175 0.98694 1.69939 1.33338 1.28505 1.25609 0.86196 0.81571 0.80869 0.77143 1.21273 1.21628 1.21138 1.22105 0.90648 0.91582 0.97371 1.21732 0.96996 0.94493 0.86097 0.91022 1.20629 0.75024 0.81040 0.96137 1.22824 1.04686 1.01472 0.96235 1.93053 1.84728 1.41624 1.97275 1.93024 1.30771 1.96520 1.97453 0.90115 0.90295 0.90634 0.89464 0.91788 0.91899 0.87968 0.93096 0.92669 0.93779 0.89515 0.95689 0.88923 0.89789 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.31 37.16 0.31 -1.30 16 2 C -0.16 -1.89 1.57 -91.78 -0.14 -2.03 16 3 H 0.12 1.02 7.30 -51.93 -0.38 0.64 16 4 C 0.51 8.74 6.04 -10.99 -0.07 8.68 16 5 O -0.51 -10.63 11.98 5.56 0.07 -10.57 16 6 N -0.58 -9.70 3.09 -168.83 -0.52 -10.22 16 7 C 0.07 0.88 5.47 -5.39 -0.03 0.85 16 8 C 0.06 0.81 6.71 36.63 0.25 1.05 16 9 O -0.37 -6.45 10.25 -33.47 -0.34 -6.80 16 10 C 0.07 1.31 3.78 -26.40 -0.10 1.21 16 11 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 12 C 0.15 3.73 5.02 -3.41 -0.02 3.72 16 13 N -0.60 -15.81 3.39 -171.44 -0.58 -16.39 16 14 C -0.22 -6.34 10.25 -15.06 -0.15 -6.50 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 17 N -0.93 -27.19 10.26 55.49 0.57 -26.62 16 18 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 22 C 0.11 2.51 6.30 -3.23 -0.02 2.49 16 23 C 0.11 2.13 3.43 -68.51 -0.23 1.89 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 C 0.31 3.90 1.52 -26.73 -0.04 3.86 16 26 C -0.19 -1.49 9.14 37.16 0.34 -1.15 16 27 F -0.19 -2.97 15.26 2.25 0.03 -2.94 16 28 F -0.20 -2.95 16.31 2.25 0.04 -2.91 16 29 H 0.08 0.90 5.91 -51.93 -0.31 0.59 16 30 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 31 H 0.07 0.53 6.91 -51.93 -0.36 0.17 16 32 H 0.09 0.92 4.36 -51.93 -0.23 0.69 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.05 6.77 -51.93 -0.35 0.70 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 37 H 0.06 1.47 5.71 -51.93 -0.30 1.17 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.09 2.16 4.79 -52.48 -0.25 1.91 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.56 6.72 -51.93 -0.35 0.21 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -34.80 331.01 -6.58 -41.38 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.80 Total: 0.15 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -0.01 Total: 12.40 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.53 Total: -53.23 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.28 Total: -17.37 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.07 Total: -5.85 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.80 -6.58 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083196291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.856 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds