Wall clock time and date at job start Tue Mar 31 2020 14:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47359 * 2 1 4 4 C 1.50694 * 109.47583 * 239.99197 * 2 1 3 5 5 O 1.21275 * 120.00366 * 258.92398 * 4 2 1 6 6 N 1.34780 * 119.99866 * 78.92675 * 4 2 1 7 7 C 1.44964 * 117.33993 * 357.35885 * 6 4 2 8 8 C 1.51960 * 111.93781 * 203.76444 * 7 6 4 9 9 O 1.41319 * 111.60278 * 319.68231 * 8 7 6 10 10 C 1.40299 * 117.97360 * 57.07032 * 9 8 7 11 11 H 1.08995 * 108.36192 * 187.78877 * 10 9 8 12 12 C 1.53910 * 110.52581 * 67.77569 * 10 9 8 13 13 N 1.46781 * 107.62993 * 220.90726 * 12 10 9 14 14 C 1.36938 * 125.36505 * 178.77951 * 13 12 10 15 15 H 1.07996 * 119.99979 * 180.02562 * 14 13 12 16 16 C 1.38812 * 119.99812 * 0.02579 * 14 13 12 17 17 N 1.31615 * 120.00048 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99639 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47372 * 59.99366 * 18 16 14 20 20 H 1.48507 * 109.46901 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46734 * 299.99041 * 18 16 14 22 22 C 1.46868 * 109.27028 * 358.79810 * 13 12 10 23 23 C 1.44547 * 117.34030 * 177.33960 * 6 4 2 24 24 H 1.08997 * 109.64163 * 285.96954 * 23 6 4 25 25 C 1.52999 * 109.46918 * 119.99303 * 2 1 3 26 26 C 1.53004 * 109.47321 * 295.00226 * 25 2 1 27 27 F 1.39901 * 109.47386 * 55.00113 * 25 2 1 28 28 F 1.39899 * 109.47384 * 175.00510 * 25 2 1 29 29 H 1.09001 * 109.46551 * 66.80929 * 1 2 3 30 30 H 1.09002 * 109.46810 * 186.80328 * 1 2 3 31 31 H 1.08997 * 109.47609 * 306.81037 * 1 2 3 32 32 H 1.09003 * 108.98473 * 324.39931 * 7 6 4 33 33 H 1.09003 * 108.98493 * 83.20938 * 7 6 4 34 34 H 1.08994 * 109.05226 * 80.23188 * 8 7 6 35 35 H 1.09003 * 109.05303 * 199.13992 * 8 7 6 36 36 H 1.08997 * 109.83084 * 101.37991 * 12 10 9 37 37 H 1.09005 * 109.82431 * 340.42649 * 12 10 9 38 38 H 0.97005 * 119.99999 * 180.02562 * 17 16 14 39 39 H 1.09004 * 110.06510 * 137.03280 * 22 13 12 40 40 H 1.09006 * 110.06839 * 258.49825 * 22 13 12 41 41 H 1.09002 * 109.46658 * 60.00193 * 26 25 2 42 42 H 1.09004 * 109.47446 * 179.97438 * 26 25 2 43 43 H 1.09000 * 109.47284 * 300.00125 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.4248 -1.8553 -1.1517 6 7 2.0457 -0.0737 -2.4181 7 6 1.5095 1.2726 -2.4577 8 6 1.0455 1.6580 -3.8525 9 8 1.9378 1.1928 -4.8447 10 6 2.2057 -0.1834 -4.8958 11 1 3.0075 -0.3507 -5.6150 12 6 0.9519 -0.9615 -5.3333 13 7 0.8731 -2.1756 -4.5122 14 6 -0.1177 -3.1181 -4.5842 15 1 -0.0899 -3.9814 -3.9358 16 6 -1.1577 -2.9640 -5.4905 17 7 -1.1918 -1.9117 -6.2803 18 14 -2.5096 -4.2494 -5.5881 19 1 -3.1917 -4.3513 -4.2730 20 1 -3.4945 -3.8540 -6.6269 21 1 -1.9174 -5.5645 -5.9419 22 6 2.0241 -2.2200 -3.6010 23 6 2.5939 -0.7885 -3.5485 24 1 3.6799 -0.8294 -3.4645 25 6 2.0399 -0.7211 1.2493 26 6 1.6351 0.0692 2.4954 27 9 1.4821 -2.0027 1.3084 28 9 3.4342 -0.8215 1.1935 29 1 -0.3632 0.4047 -0.9447 30 1 -0.3633 -1.0205 0.1217 31 1 -0.3634 0.6157 0.8227 32 1 0.6647 1.3381 -1.7721 33 1 2.2818 1.9715 -2.1363 34 1 0.0597 1.2286 -4.0308 35 1 0.9763 2.7439 -3.9171 36 1 1.0332 -1.2319 -6.3861 37 1 0.0635 -0.3500 -5.1751 38 1 -1.9188 -1.8038 -6.9134 39 1 1.7024 -2.5312 -2.6071 40 1 2.7771 -2.9094 -3.9829 41 1 0.5488 0.1473 2.5389 42 1 1.9980 -0.4448 3.3855 43 1 2.0697 1.0677 2.4494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083196291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:20 Heat of formation + Delta-G solvation = -148.292337 kcal Electronic energy + Delta-G solvation = -29717.598025 eV Core-core repulsion = 25434.592426 eV Total energy + Delta-G solvation = -4283.005599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.89236 -47.90223 -42.28890 -39.95150 -37.73597 -36.37543 -35.65358 -34.19971 -31.74019 -30.79804 -29.59634 -29.02323 -26.78119 -26.16430 -24.73307 -23.49796 -22.23576 -21.20069 -19.97778 -19.22870 -18.63064 -18.35481 -18.24070 -17.70530 -17.18589 -16.81218 -16.56067 -16.37294 -16.20613 -15.76326 -15.35515 -15.23157 -14.88657 -14.55854 -14.34399 -14.23903 -13.96974 -13.83021 -13.65124 -13.54538 -13.52297 -13.12031 -13.01320 -12.96783 -12.84603 -12.73709 -12.55610 -12.40958 -12.20070 -12.14774 -11.84789 -11.75651 -11.65208 -10.86436 -10.76065 -10.29413 -9.58997 -8.91964 -7.90088 -5.26230 1.40503 1.43037 1.44532 1.50615 1.73327 2.43936 2.71853 2.77249 3.04801 3.20967 3.27354 3.42743 3.50418 3.66889 3.69899 3.84366 3.93927 4.01954 4.08498 4.11637 4.22454 4.34920 4.36377 4.52560 4.61622 4.63788 4.72881 4.73315 4.81793 4.85140 4.98253 5.05835 5.07104 5.22297 5.36491 5.45034 5.59352 5.62045 6.13592 6.17190 6.40310 7.02650 7.07422 7.70874 8.33083 9.18752 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.005225 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.090028 B = 5357.737220 C = 6327.144473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 H 0.163 0.837 4 C 0.499 3.501 5 O -0.558 6.558 6 N -0.586 5.586 7 C 0.062 3.938 8 C 0.048 3.952 9 O -0.369 6.369 10 C 0.086 3.914 11 H 0.123 0.877 12 C 0.165 3.835 13 N -0.617 5.617 14 C -0.246 4.246 15 H 0.068 0.932 16 C -0.056 4.056 17 N -0.946 5.946 18 Si 0.977 3.023 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.280 1.280 22 C 0.107 3.893 23 C 0.122 3.878 24 H 0.087 0.913 25 C 0.289 3.711 26 C -0.185 4.185 27 F -0.215 7.215 28 F -0.215 7.215 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.030 0.970 35 H 0.150 0.850 36 H 0.013 0.987 37 H 0.029 0.971 38 H 0.249 0.751 39 H 0.070 0.930 40 H 0.015 0.985 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 14.611 15.900 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 H 0.181 0.819 4 C 0.287 3.713 5 O -0.436 6.436 6 N -0.319 5.319 7 C -0.059 4.059 8 C -0.028 4.028 9 O -0.286 6.286 10 C 0.026 3.974 11 H 0.141 0.859 12 C 0.040 3.960 13 N -0.344 5.344 14 C -0.375 4.375 15 H 0.086 0.914 16 C -0.250 4.250 17 N -0.594 5.594 18 Si 0.805 3.195 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.206 1.206 22 C -0.019 4.019 23 C 0.017 3.983 24 H 0.105 0.895 25 C 0.253 3.747 26 C -0.242 4.242 27 F -0.196 7.196 28 F -0.197 7.197 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.048 0.952 35 H 0.167 0.833 36 H 0.031 0.969 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.926 14.115 15.641 21.636 hybrid contribution -0.723 -1.724 -0.636 1.974 sum 4.203 12.391 15.005 19.909 Atomic orbital electron populations 1.21948 0.89151 1.03810 1.05528 1.22630 1.01040 1.03332 0.89859 0.81906 1.21106 0.78121 0.86443 0.85584 1.90649 1.48452 1.18872 1.85677 1.46699 1.61387 1.16324 1.07500 1.22237 1.01661 0.81998 1.00042 1.22568 0.92085 1.02059 0.86103 1.86835 1.65470 1.21442 1.54847 1.22564 0.98210 0.81716 0.94899 0.85938 1.21421 0.94225 0.87098 0.93295 1.44437 1.24592 1.23602 1.41797 1.19266 1.00588 1.00677 1.16922 0.91367 1.25561 1.00905 1.00229 0.98262 1.70151 1.33677 1.29834 1.25771 0.85186 0.78646 0.78426 0.77264 1.20508 1.21186 1.20633 1.22130 0.89528 0.94549 0.95648 1.21434 0.97633 0.92126 0.87115 0.89501 1.21430 0.74021 0.80422 0.98819 1.22867 1.06125 1.01931 0.93244 1.92996 1.85075 1.43999 1.97514 1.92982 1.32417 1.96577 1.97686 0.90587 0.93556 0.85743 0.86868 0.87567 0.95204 0.83274 0.96887 0.95340 0.94144 0.91258 0.96739 0.86946 0.89656 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.31 71.98 0.60 -2.14 16 2 C -0.15 -3.12 1.57 -11.54 -0.02 -3.14 16 3 H 0.16 1.91 7.30 -2.39 -0.02 1.90 16 4 C 0.50 16.62 6.04 87.65 0.53 17.15 16 5 O -0.56 -24.15 11.98 -3.02 -0.04 -24.19 16 6 N -0.59 -18.72 3.09 -806.45 -2.49 -21.21 16 7 C 0.06 1.34 5.47 86.32 0.47 1.82 16 8 C 0.05 1.26 6.71 71.64 0.48 1.74 16 9 O -0.37 -12.34 10.25 -142.67 -1.46 -13.80 16 10 C 0.09 3.32 3.78 30.81 0.12 3.44 16 11 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 12 C 0.16 8.39 5.02 86.63 0.43 8.82 16 13 N -0.62 -33.97 3.39 -696.30 -2.36 -36.33 16 14 C -0.25 -14.73 10.25 84.03 0.86 -13.87 16 15 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 16 C -0.06 -3.30 5.48 84.86 0.47 -2.83 16 17 N -0.95 -57.36 10.26 21.65 0.22 -57.14 16 18 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 C 0.11 5.15 6.30 86.70 0.55 5.70 16 23 C 0.12 4.67 3.43 45.65 0.16 4.83 16 24 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 25 C 0.29 6.78 1.52 30.60 0.05 6.82 16 26 C -0.18 -2.09 9.14 71.98 0.66 -1.43 16 27 F -0.21 -6.95 15.26 44.97 0.69 -6.26 16 28 F -0.22 -6.24 16.31 44.97 0.73 -5.51 16 29 H 0.08 1.49 5.91 -2.39 -0.01 1.48 16 30 H 0.05 1.18 7.48 -2.39 -0.02 1.16 16 31 H 0.12 1.08 6.91 -2.39 -0.02 1.07 16 32 H 0.11 1.88 4.36 -2.39 -0.01 1.87 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.03 0.98 6.77 -2.39 -0.02 0.96 16 35 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.01 0.74 7.49 -2.39 -0.02 0.73 16 37 H 0.03 1.59 5.71 -2.38 -0.01 1.57 16 38 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 39 H 0.07 3.65 4.79 -11.15 -0.05 3.60 16 40 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.11 0.82 6.72 -2.39 -0.02 0.81 16 42 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -82.98 331.01 3.67 -79.31 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.00 Total: 8.86 kcal Atomic # 6 Polarization: 21.56 SS G_CDS: 5.35 Total: 26.91 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.63 Total: -114.68 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.50 Total: -37.99 kcal Atomic # 9 Polarization: -13.19 SS G_CDS: 1.42 Total: -11.77 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -82.98 3.67 -79.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083196291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.980 kcal (2) G-P(sol) polarization free energy of solvation -82.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds