Wall clock time and date at job start Tue Mar 31 2020 13:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.87698 * 2 1 4 4 C 1.54325 * 109.88521 * 238.98704 * 2 1 3 5 5 H 1.09003 * 110.71604 * 336.77225 * 4 2 1 6 6 N 1.46495 * 110.72264 * 99.87043 * 4 2 1 7 7 C 1.34776 * 119.99906 * 205.00440 * 6 4 2 8 8 O 1.21274 * 120.00291 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00015 * 179.97438 * 7 6 4 10 10 H 1.09004 * 112.50494 * 50.32510 * 9 7 6 11 11 C 1.52886 * 113.22479 * 180.19732 * 9 7 6 12 12 C 1.51433 * 84.73635 * 115.23342 * 11 9 7 13 13 C 1.38969 * 145.49905 * 180.02562 * 12 11 9 14 14 C 1.37928 * 120.36211 * 179.97438 * 13 12 11 15 15 C 1.38469 * 120.14876 * 0.02562 * 14 13 12 16 16 F 1.35102 * 120.15020 * 180.02562 * 15 14 13 17 17 C 1.38396 * 119.69485 * 0.20972 * 15 14 13 18 18 C 1.38202 * 120.10219 * 359.58066 * 17 15 14 19 19 C 1.55152 * 102.94298 * 218.23663 * 4 2 1 20 20 C 1.54908 * 101.58527 * 35.49728 * 19 4 2 21 21 N 1.47024 * 110.01348 * 121.09844 * 2 1 3 22 22 C 1.36932 * 125.64942 * 298.39699 * 21 2 1 23 23 H 1.08006 * 119.99797 * 341.48738 * 22 21 2 24 24 C 1.38813 * 120.00206 * 161.48272 * 22 21 2 25 25 N 1.31615 * 119.99808 * 157.60497 * 24 22 21 26 26 Si 1.86799 * 119.99891 * 337.61207 * 24 22 21 27 27 H 1.48500 * 109.47005 * 84.53774 * 26 24 22 28 28 H 1.48505 * 109.46941 * 204.53307 * 26 24 22 29 29 H 1.48498 * 109.47091 * 324.53456 * 26 24 22 30 30 H 1.08998 * 109.47399 * 181.01468 * 1 2 3 31 31 H 1.09003 * 109.47338 * 301.01632 * 1 2 3 32 32 H 1.09007 * 109.47247 * 61.01660 * 1 2 3 33 33 H 0.96998 * 120.00360 * 24.99700 * 6 4 2 34 34 H 1.08997 * 113.98788 * 229.18777 * 11 9 7 35 35 H 1.09000 * 113.98497 * 1.29188 * 11 9 7 36 36 H 1.08004 * 119.81970 * 359.96400 * 13 12 11 37 37 H 1.07996 * 119.92659 * 180.02562 * 14 13 12 38 38 H 1.08007 * 119.94986 * 179.63308 * 17 15 14 39 39 H 1.09007 * 111.00782 * 153.57352 * 19 4 2 40 40 H 1.09005 * 111.00798 * 277.42393 * 19 4 2 41 41 H 1.08996 * 110.36869 * 204.15297 * 20 19 4 42 42 H 1.09002 * 110.46049 * 81.88071 * 20 19 4 43 43 H 0.97006 * 120.00184 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 1.3049 -1.4434 -1.6205 6 7 2.4520 0.1992 -2.2886 7 6 2.4538 -0.1846 -3.5806 8 8 2.1271 -1.3139 -3.8782 9 6 2.8619 0.7897 -4.6555 10 1 3.8108 1.2794 -4.4364 11 6 2.8031 0.1946 -6.0625 12 6 1.7131 1.2189 -6.2992 13 6 0.8060 1.7346 -7.2170 14 6 -0.0314 2.7716 -6.8622 15 6 0.0267 3.3071 -5.5866 16 9 -0.7939 4.3225 -5.2389 17 6 0.9319 2.8000 -4.6707 18 6 1.7674 1.7581 -5.0261 19 6 3.2899 -1.5100 -0.6954 20 6 2.8196 -1.8769 0.7342 21 7 2.0331 -0.7135 1.1829 22 6 1.8090 -0.3563 2.4857 23 1 1.4884 0.6475 2.7228 24 6 1.9937 -1.2841 3.5015 25 7 2.2158 -0.8761 4.7329 26 14 1.9273 -3.1116 3.1206 27 1 3.2580 -3.5665 2.6435 28 1 1.5595 -3.8603 4.3492 29 1 0.9117 -3.3609 2.0663 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3634 0.5295 0.8807 32 1 -0.3634 0.4980 -0.8990 33 1 2.7136 1.1024 -2.0506 34 1 3.7042 0.3618 -6.6524 35 1 2.4549 -0.8379 -6.0927 36 1 0.7565 1.3214 -8.2136 37 1 -0.7340 3.1668 -7.5809 38 1 0.9848 3.2185 -3.6765 39 1 3.4887 -2.4062 -1.2834 40 1 4.1664 -0.8628 -0.6642 41 1 3.6778 -2.0298 1.3884 42 1 2.1961 -2.7708 0.7125 43 1 2.3453 -1.5245 5.4428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088819699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:13 Heat of formation + Delta-G solvation = 11.906888 kcal Electronic energy + Delta-G solvation = -26390.873181 eV Core-core repulsion = 22545.583567 eV Total energy + Delta-G solvation = -3845.289615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.16246 -41.34988 -39.38148 -37.84881 -35.30735 -34.22621 -32.16097 -31.20772 -30.73898 -29.51668 -27.81190 -25.94547 -24.49598 -23.92584 -22.81834 -21.57135 -20.88594 -20.29932 -19.44574 -17.82443 -17.29928 -17.02143 -16.78786 -16.15918 -15.83186 -15.51480 -15.15650 -15.01738 -14.58277 -14.40497 -14.13334 -13.80758 -13.49968 -13.22078 -13.02260 -12.78465 -12.72446 -12.19959 -12.15984 -12.08751 -11.84678 -11.73145 -11.59093 -11.23010 -10.96043 -10.93140 -10.80768 -10.51098 -10.20459 -10.02556 -9.97540 -9.46436 -9.28272 -8.90590 -8.78126 -8.68601 -7.11293 -5.97159 -3.28316 0.73405 0.84037 2.45393 3.04538 3.24899 3.34136 3.48431 3.50601 3.53689 3.91363 4.07171 4.19282 4.53059 4.59996 4.62696 4.84699 4.92801 4.95916 5.12619 5.14420 5.19617 5.28747 5.30468 5.39986 5.56354 5.58887 5.71047 5.75793 5.81831 5.84713 5.90586 6.01656 6.13863 6.23437 6.27219 6.36594 6.41983 6.51264 6.59488 6.70237 6.76513 6.94180 7.50324 7.67043 8.16846 8.28566 8.79724 9.65867 10.12988 11.18747 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.003131 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.363475 B = 8940.392778 C = 9826.041608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.046 0.954 4 C 0.133 3.867 5 H 0.098 0.902 6 N -0.710 5.710 7 C 0.528 3.472 8 O -0.534 6.534 9 C -0.063 4.063 10 H 0.123 0.877 11 C -0.056 4.056 12 C -0.125 4.125 13 C -0.072 4.072 14 C -0.146 4.146 15 C 0.099 3.901 16 F -0.136 7.136 17 C -0.115 4.115 18 C -0.098 4.098 19 C -0.140 4.140 20 C 0.111 3.889 21 N -0.601 5.601 22 C -0.239 4.239 23 H 0.093 0.907 24 C 0.024 3.976 25 N -0.908 5.908 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.302 1.302 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.401 0.599 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 6.666 -24.811 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.063 0.937 4 C 0.028 3.972 5 H 0.116 0.884 6 N -0.360 5.360 7 C 0.313 3.687 8 O -0.411 6.411 9 C -0.085 4.085 10 H 0.141 0.859 11 C -0.093 4.093 12 C -0.126 4.126 13 C -0.091 4.091 14 C -0.165 4.165 15 C 0.080 3.920 16 F -0.114 7.114 17 C -0.134 4.134 18 C -0.099 4.099 19 C -0.179 4.179 20 C -0.014 4.014 21 N -0.327 5.327 22 C -0.366 4.366 23 H 0.110 0.890 24 C -0.175 4.175 25 N -0.551 5.551 26 Si 0.711 3.289 27 H -0.212 1.212 28 H -0.230 1.230 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.236 0.764 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.661 5.886 -24.713 25.413 hybrid contribution -0.250 -0.319 0.253 0.478 sum 0.412 5.567 -24.460 25.089 Atomic orbital electron populations 1.22203 0.97189 1.01595 1.00518 1.21079 0.92877 0.95238 0.85976 0.93654 1.22172 0.97138 0.91080 0.86793 0.88420 1.45995 1.67909 1.16194 1.05878 1.19977 0.77573 0.88006 0.83137 1.90698 1.47815 1.20496 1.82103 1.21380 0.97926 0.93434 0.95713 0.85918 1.21750 0.96191 0.99181 0.92198 1.22415 0.97527 0.97973 0.94658 1.20359 0.93979 0.95155 0.99558 1.20985 1.01654 0.98445 0.95392 1.17317 0.92041 0.88631 0.94010 1.91524 1.70266 1.57024 1.92602 1.20092 0.95722 0.97273 1.00338 1.20993 0.97027 0.95079 0.96778 1.23130 0.97552 1.00122 0.97104 1.21959 0.95268 0.91150 0.93041 1.44817 1.57321 1.29073 1.01478 1.18577 1.42610 0.96831 0.78593 0.88978 1.24981 1.00049 0.97662 0.94811 1.69832 1.50651 1.33989 1.00675 0.87015 0.78266 0.87435 0.76186 1.21166 1.23038 1.20168 0.93034 0.91959 0.94095 0.76436 0.87888 0.86623 0.85162 0.84337 0.84570 0.91221 0.90861 0.91912 0.95485 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.14 37.15 0.34 -2.48 16 2 C 0.16 2.90 3.47 -66.96 -0.23 2.67 16 3 H 0.05 0.81 7.72 -51.93 -0.40 0.41 16 4 C 0.13 2.16 2.84 -66.10 -0.19 1.98 16 5 H 0.10 1.74 7.26 -51.93 -0.38 1.36 16 6 N -0.71 -9.04 5.18 -52.04 -0.27 -9.31 16 7 C 0.53 6.74 7.33 -10.98 -0.08 6.66 16 8 O -0.53 -8.74 15.31 5.56 0.09 -8.65 16 9 C -0.06 -0.58 4.14 -96.57 -0.40 -0.98 16 10 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.06 -0.46 7.91 -27.58 -0.22 -0.68 16 12 C -0.13 -1.16 7.32 -107.56 -0.79 -1.94 16 13 C -0.07 -0.59 10.04 -39.42 -0.40 -0.99 16 14 C -0.15 -1.25 10.01 -39.61 -0.40 -1.64 16 15 C 0.10 1.01 7.31 -39.44 -0.29 0.72 16 16 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 17 C -0.12 -1.16 10.02 -39.54 -0.40 -1.56 16 18 C -0.10 -0.97 7.05 -104.56 -0.74 -1.70 16 19 C -0.14 -2.38 6.77 -24.59 -0.17 -2.54 16 20 C 0.11 2.39 4.70 -2.53 -0.01 2.38 16 21 N -0.60 -13.98 2.94 -162.58 -0.48 -14.46 16 22 C -0.24 -6.58 10.19 -15.06 -0.15 -6.73 16 23 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 24 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 25 N -0.91 -27.68 13.97 55.49 0.78 -26.91 16 26 Si 0.88 22.50 24.27 -169.99 -4.13 18.37 16 27 H -0.28 -6.99 6.49 56.52 0.37 -6.63 16 28 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 29 H -0.28 -7.00 6.66 56.52 0.38 -6.63 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.40 4.16 8.37 -40.82 -0.34 3.82 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.12 1.11 7.02 -51.93 -0.36 0.75 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.43 6.64 -51.93 -0.34 1.09 16 42 H 0.03 0.62 5.57 -51.93 -0.29 0.33 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -32.81 352.89 -8.82 -41.64 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.96 Total: 1.70 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -4.21 Total: -6.26 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.03 Total: -50.67 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.13 Total: 18.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.81 -8.82 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088819699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.542 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds