Wall clock time and date at job start Tue Mar 31 2020 13:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.87698 * 2 1 4 4 C 1.54325 * 109.88521 * 238.98704 * 2 1 3 5 5 H 1.09003 * 110.71604 * 336.77225 * 4 2 1 6 6 N 1.46495 * 110.72264 * 99.87043 * 4 2 1 7 7 C 1.34776 * 119.99906 * 205.00440 * 6 4 2 8 8 O 1.21274 * 120.00291 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00015 * 179.97438 * 7 6 4 10 10 H 1.09004 * 112.50494 * 50.32510 * 9 7 6 11 11 C 1.52886 * 113.22479 * 180.19732 * 9 7 6 12 12 C 1.51433 * 84.73635 * 115.23342 * 11 9 7 13 13 C 1.38969 * 145.49905 * 180.02562 * 12 11 9 14 14 C 1.37928 * 120.36211 * 179.97438 * 13 12 11 15 15 C 1.38469 * 120.14876 * 0.02562 * 14 13 12 16 16 F 1.35102 * 120.15020 * 180.02562 * 15 14 13 17 17 C 1.38396 * 119.69485 * 0.20972 * 15 14 13 18 18 C 1.38202 * 120.10219 * 359.58066 * 17 15 14 19 19 C 1.55152 * 102.94298 * 218.23663 * 4 2 1 20 20 C 1.54908 * 101.58527 * 35.49728 * 19 4 2 21 21 N 1.47024 * 110.01348 * 121.09844 * 2 1 3 22 22 C 1.36932 * 125.64942 * 298.39699 * 21 2 1 23 23 H 1.08006 * 119.99797 * 341.48738 * 22 21 2 24 24 C 1.38813 * 120.00206 * 161.48272 * 22 21 2 25 25 N 1.31615 * 119.99808 * 157.60497 * 24 22 21 26 26 Si 1.86799 * 119.99891 * 337.61207 * 24 22 21 27 27 H 1.48500 * 109.47005 * 84.53774 * 26 24 22 28 28 H 1.48505 * 109.46941 * 204.53307 * 26 24 22 29 29 H 1.48498 * 109.47091 * 324.53456 * 26 24 22 30 30 H 1.08998 * 109.47399 * 181.01468 * 1 2 3 31 31 H 1.09003 * 109.47338 * 301.01632 * 1 2 3 32 32 H 1.09007 * 109.47247 * 61.01660 * 1 2 3 33 33 H 0.96998 * 120.00360 * 24.99700 * 6 4 2 34 34 H 1.08997 * 113.98788 * 229.18777 * 11 9 7 35 35 H 1.09000 * 113.98497 * 1.29188 * 11 9 7 36 36 H 1.08004 * 119.81970 * 359.96400 * 13 12 11 37 37 H 1.07996 * 119.92659 * 180.02562 * 14 13 12 38 38 H 1.08007 * 119.94986 * 179.63308 * 17 15 14 39 39 H 1.09007 * 111.00782 * 153.57352 * 19 4 2 40 40 H 1.09005 * 111.00798 * 277.42393 * 19 4 2 41 41 H 1.08996 * 110.36869 * 204.15297 * 20 19 4 42 42 H 1.09002 * 110.46049 * 81.88071 * 20 19 4 43 43 H 0.97006 * 120.00184 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 1.3049 -1.4434 -1.6205 6 7 2.4520 0.1992 -2.2886 7 6 2.4538 -0.1846 -3.5806 8 8 2.1271 -1.3139 -3.8782 9 6 2.8619 0.7897 -4.6555 10 1 3.8108 1.2794 -4.4364 11 6 2.8031 0.1946 -6.0625 12 6 1.7131 1.2189 -6.2992 13 6 0.8060 1.7346 -7.2170 14 6 -0.0314 2.7716 -6.8622 15 6 0.0267 3.3071 -5.5866 16 9 -0.7939 4.3225 -5.2389 17 6 0.9319 2.8000 -4.6707 18 6 1.7674 1.7581 -5.0261 19 6 3.2899 -1.5100 -0.6954 20 6 2.8196 -1.8769 0.7342 21 7 2.0331 -0.7135 1.1829 22 6 1.8090 -0.3563 2.4857 23 1 1.4884 0.6475 2.7228 24 6 1.9937 -1.2841 3.5015 25 7 2.2158 -0.8761 4.7329 26 14 1.9273 -3.1116 3.1206 27 1 3.2580 -3.5665 2.6435 28 1 1.5595 -3.8603 4.3492 29 1 0.9117 -3.3609 2.0663 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3634 0.5295 0.8807 32 1 -0.3634 0.4980 -0.8990 33 1 2.7136 1.1024 -2.0506 34 1 3.7042 0.3618 -6.6524 35 1 2.4549 -0.8379 -6.0927 36 1 0.7565 1.3214 -8.2136 37 1 -0.7340 3.1668 -7.5809 38 1 0.9848 3.2185 -3.6765 39 1 3.4887 -2.4062 -1.2834 40 1 4.1664 -0.8628 -0.6642 41 1 3.6778 -2.0298 1.3884 42 1 2.1961 -2.7708 0.7125 43 1 2.3453 -1.5245 5.4428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088819699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:12 Heat of formation + Delta-G solvation = -8.620329 kcal Electronic energy + Delta-G solvation = -26391.763308 eV Core-core repulsion = 22545.583567 eV Total energy + Delta-G solvation = -3846.179742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.93196 -42.13261 -40.53461 -39.19227 -36.05798 -35.62777 -34.06419 -32.28021 -31.90132 -31.18567 -28.60584 -27.02474 -25.90151 -25.54759 -23.64986 -22.71131 -22.02642 -21.52749 -20.66811 -18.86229 -18.68620 -18.10607 -17.70434 -17.41530 -16.98070 -16.61514 -16.25816 -16.16057 -15.88422 -15.49192 -15.24665 -14.95919 -14.62921 -14.58337 -14.45160 -14.00514 -13.93634 -13.70770 -13.34650 -13.24209 -12.93741 -12.81902 -12.72144 -12.60750 -12.49014 -12.37091 -12.13831 -12.04638 -11.65294 -11.62379 -11.49507 -11.01786 -10.81979 -10.07086 -9.98139 -9.48114 -9.09597 -8.18027 -5.44446 0.04715 0.17021 1.29101 1.38547 1.45853 1.49446 2.04707 2.40429 2.53030 2.81795 3.03504 3.25276 3.29631 3.41060 3.52848 3.63215 3.74857 3.85007 3.98830 4.12022 4.25954 4.28033 4.33618 4.43142 4.50302 4.51019 4.63801 4.71439 4.77912 4.85076 4.87775 4.97466 4.97904 5.05527 5.07782 5.12565 5.15206 5.20999 5.32656 5.53503 5.57505 5.68696 5.85254 6.10770 6.50976 6.74480 7.18361 7.53171 8.08492 9.01714 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.003131 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.363475 B = 8940.392778 C = 9826.041608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.151 3.849 3 H 0.059 0.941 4 C 0.149 3.851 5 H 0.086 0.914 6 N -0.701 5.701 7 C 0.529 3.471 8 O -0.571 6.571 9 C -0.055 4.055 10 H 0.156 0.844 11 C -0.050 4.050 12 C -0.132 4.132 13 C -0.075 4.075 14 C -0.145 4.145 15 C 0.077 3.923 16 F -0.146 7.146 17 C -0.126 4.126 18 C -0.113 4.113 19 C -0.125 4.125 20 C 0.104 3.896 21 N -0.617 5.617 22 C -0.222 4.222 23 H 0.066 0.934 24 C -0.033 4.033 25 N -0.955 5.955 26 Si 0.937 3.063 27 H -0.269 1.269 28 H -0.310 1.310 29 H -0.275 1.275 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 6.645 -28.134 28.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.045 3.955 3 H 0.076 0.924 4 C 0.043 3.957 5 H 0.104 0.896 6 N -0.352 5.352 7 C 0.316 3.684 8 O -0.450 6.450 9 C -0.075 4.075 10 H 0.173 0.827 11 C -0.087 4.087 12 C -0.132 4.132 13 C -0.092 4.092 14 C -0.163 4.163 15 C 0.058 3.942 16 F -0.125 7.125 17 C -0.145 4.145 18 C -0.114 4.114 19 C -0.164 4.164 20 C -0.021 4.021 21 N -0.343 5.343 22 C -0.350 4.350 23 H 0.083 0.917 24 C -0.228 4.228 25 N -0.602 5.602 26 Si 0.766 3.234 27 H -0.195 1.195 28 H -0.239 1.239 29 H -0.200 1.200 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.252 0.748 34 H 0.153 0.847 35 H 0.119 0.881 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.573 5.891 -28.094 28.748 hybrid contribution -0.571 -0.210 1.193 1.339 sum 1.002 5.681 -26.901 27.513 Atomic orbital electron populations 1.22114 0.96753 1.00869 1.01088 1.21261 0.93221 0.95638 0.85406 0.92357 1.21740 0.96418 0.91045 0.86512 0.89627 1.45837 1.67784 1.16259 1.05359 1.20589 0.76371 0.88078 0.83350 1.90691 1.49285 1.22370 1.82612 1.21435 0.98997 0.92409 0.94698 0.82702 1.21807 0.97087 0.97935 0.91820 1.22707 0.97809 0.98063 0.94657 1.20677 0.93218 0.94695 1.00643 1.21277 1.01779 0.98159 0.95085 1.17592 0.92573 0.89077 0.94997 1.91494 1.70640 1.57558 1.92783 1.20224 0.95959 0.97658 1.00681 1.21095 0.97508 0.95369 0.97398 1.23040 0.98159 1.01169 0.94077 1.22022 0.94323 0.90281 0.95522 1.44894 1.58230 1.29925 1.01276 1.18509 1.40191 0.95645 0.80697 0.91665 1.25529 1.01208 1.01250 0.94773 1.69943 1.53510 1.35029 1.01714 0.86094 0.78857 0.82950 0.75459 1.19523 1.23857 1.20036 0.94288 0.93801 0.91160 0.74785 0.84709 0.88084 0.82595 0.82389 0.84214 0.89707 0.89307 0.93479 0.96303 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.14 71.98 0.66 -4.61 16 2 C 0.15 5.43 3.47 45.34 0.16 5.58 16 3 H 0.06 1.97 7.72 -2.39 -0.02 1.96 16 4 C 0.15 4.51 2.84 46.18 0.13 4.65 16 5 H 0.09 2.88 7.26 -2.39 -0.02 2.87 16 6 N -0.70 -15.82 5.18 -436.94 -2.26 -18.08 16 7 C 0.53 12.02 7.33 87.66 0.64 12.66 16 8 O -0.57 -17.42 15.31 -3.01 -0.05 -17.47 16 9 C -0.05 -0.81 4.14 -14.65 -0.06 -0.87 16 10 H 0.16 1.29 8.14 -2.38 -0.02 1.27 16 11 C -0.05 -0.64 7.91 30.04 0.24 -0.41 16 12 C -0.13 -2.05 7.32 -21.77 -0.16 -2.21 16 13 C -0.07 -1.00 10.04 22.37 0.22 -0.78 16 14 C -0.14 -2.15 10.01 22.25 0.22 -1.93 16 15 C 0.08 1.46 7.31 22.36 0.16 1.62 16 16 F -0.15 -3.11 17.27 44.97 0.78 -2.33 16 17 C -0.13 -2.33 10.02 22.30 0.22 -2.11 16 18 C -0.11 -1.93 7.05 -19.82 -0.14 -2.07 16 19 C -0.13 -3.95 6.77 31.98 0.22 -3.73 16 20 C 0.10 4.32 4.70 86.85 0.41 4.73 16 21 N -0.62 -28.43 2.94 -668.27 -1.97 -30.40 16 22 C -0.22 -12.40 10.19 84.03 0.86 -11.55 16 23 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 24 C -0.03 -1.93 5.43 84.86 0.46 -1.47 16 25 N -0.95 -59.91 13.97 21.65 0.30 -59.61 16 26 Si 0.94 47.18 24.27 68.60 1.66 48.84 16 27 H -0.27 -12.73 6.49 99.48 0.65 -12.09 16 28 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 29 H -0.27 -13.59 6.66 99.48 0.66 -12.92 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.68 8.05 -2.39 -0.02 1.66 16 32 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.42 7.23 8.37 -92.71 -0.78 6.46 16 34 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 1.69 7.02 -2.39 -0.02 1.67 16 36 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 41 H 0.05 2.10 6.64 -2.39 -0.02 2.08 16 42 H 0.02 0.84 5.57 -2.39 -0.01 0.83 16 43 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -72.58 352.89 2.87 -69.71 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.16 Total: 11.84 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 4.24 Total: -2.50 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -3.92 Total: -108.09 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.05 Total: -17.47 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.66 Total: 48.84 kcal Total: -72.58 2.87 -69.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088819699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.089 kcal (2) G-P(sol) polarization free energy of solvation -72.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds