Wall clock time and date at job start Tue Mar 31 2020 14:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47058 * 2 1 4 4 C 1.53003 * 109.47051 * 240.00694 * 2 1 3 5 5 C 1.52999 * 109.47324 * 174.99795 * 4 2 1 6 6 H 1.08996 * 109.47237 * 304.99971 * 5 4 2 7 7 C 1.52994 * 109.47279 * 184.99641 * 5 4 2 8 8 N 1.46506 * 109.47166 * 64.99751 * 5 4 2 9 9 C 1.36937 * 120.00001 * 205.00226 * 8 5 4 10 10 H 1.07999 * 119.99948 * 359.97438 * 9 8 5 11 11 C 1.38809 * 119.99761 * 180.02562 * 9 8 5 12 12 N 1.31622 * 120.00258 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99883 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47336 * 89.99707 * 13 11 9 15 15 H 1.48506 * 109.47123 * 209.99557 * 13 11 9 16 16 H 1.48502 * 109.47388 * 329.99604 * 13 11 9 17 17 N 1.46495 * 109.47534 * 120.00442 * 2 1 3 18 18 C 1.34778 * 120.00087 * 274.99980 * 17 2 1 19 19 O 1.21563 * 120.00035 * 359.97438 * 18 17 2 20 20 C 1.47795 * 120.00278 * 179.97438 * 18 17 2 21 21 C 1.41161 * 118.94627 * 359.94387 * 20 18 17 22 22 C 1.35403 * 121.76139 * 180.02562 * 21 20 18 23 23 C 1.45290 * 119.09546 * 0.03287 * 22 21 20 24 24 N 1.30880 * 138.53456 * 179.97438 * 23 22 21 25 25 O 1.21490 * 109.07504 * 180.02562 * 24 23 22 26 26 N 1.21479 * 116.30059 * 0.02562 * 25 24 23 27 27 C 1.31069 * 109.07595 * 0.02562 * 26 25 24 28 28 C 1.37768 * 118.95235 * 179.97438 * 20 18 17 29 29 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47276 * 299.99407 * 1 2 3 31 31 H 1.09001 * 109.47679 * 59.99662 * 1 2 3 32 32 H 1.09005 * 109.47079 * 294.99883 * 4 2 1 33 33 H 1.09004 * 109.47316 * 54.99249 * 4 2 1 34 34 H 1.09004 * 109.47553 * 300.00273 * 7 5 4 35 35 H 1.09005 * 109.47035 * 59.99817 * 7 5 4 36 36 H 1.08995 * 109.47295 * 179.97438 * 7 5 4 37 37 H 0.96998 * 119.99408 * 24.99718 * 8 5 4 38 38 H 0.96997 * 120.00260 * 180.02562 * 12 11 9 39 39 H 0.97005 * 119.99933 * 94.99851 * 17 2 1 40 40 H 1.07997 * 119.11915 * 0.03825 * 21 20 18 41 41 H 1.07994 * 120.45112 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.14092 * 0.25613 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 1 3.8570 0.4359 -1.2679 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3341 -0.1826 9 6 5.3944 -0.9855 0.2804 10 1 5.9389 -0.1793 -0.1886 11 6 5.9525 -1.6690 1.3518 12 7 5.2892 -2.6519 1.9231 13 14 7.6446 -1.1930 1.9839 14 1 7.5057 -0.1564 3.0382 15 1 8.3156 -2.3899 2.5520 16 1 8.4579 -0.6544 0.8642 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8584 1.1612 2.4117 20 6 2.6393 -0.7153 3.5639 21 6 2.9670 -2.0855 3.4757 22 6 3.4223 -2.7797 4.5454 23 6 3.5769 -2.0957 5.8178 24 7 3.9631 -2.3697 7.0380 25 8 3.8808 -1.3646 7.7155 26 7 3.4785 -0.3667 7.1516 27 6 3.2268 -0.6552 5.8980 28 6 2.7631 -0.0071 4.7391 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -1.7714 -1.2058 33 1 1.6052 -0.2616 -2.1371 34 1 3.7721 -2.2739 -2.6703 35 1 3.6262 -0.6884 -3.4659 36 1 5.1506 -1.1474 -2.6704 37 1 3.6647 -2.0584 0.2383 38 1 5.6790 -3.1292 2.6721 39 1 2.2491 -1.6319 1.1524 40 1 2.8516 -2.5936 2.5298 41 1 3.6671 -3.8276 4.4539 42 1 2.4989 1.0396 4.7719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135353948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:45 Heat of formation + Delta-G solvation = 117.723806 kcal Electronic energy + Delta-G solvation = -27734.214214 eV Core-core repulsion = 23913.433127 eV Total energy + Delta-G solvation = -3820.781087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.34508 -39.87091 -37.78149 -36.76495 -34.50380 -34.31990 -33.18954 -32.22632 -30.78394 -30.53471 -28.65219 -26.47248 -25.87662 -24.59870 -23.76577 -21.85636 -20.93813 -20.52688 -20.10655 -18.65638 -18.59113 -17.64159 -17.32031 -16.86815 -15.97078 -15.00634 -14.66853 -14.45366 -14.11244 -14.05192 -13.85264 -13.67827 -13.18359 -13.05882 -12.84763 -12.47073 -12.34868 -12.17630 -11.99280 -11.82501 -11.75449 -11.54687 -11.52129 -11.12230 -10.93175 -10.89957 -10.79691 -10.47553 -10.33615 -10.02011 -9.80445 -9.57211 -9.49423 -9.05611 -8.57584 -8.18841 -7.06159 -5.95474 -3.17519 0.18498 1.33124 2.14692 3.06814 3.24423 3.35716 3.41681 3.44961 3.58407 3.78068 3.98524 4.04257 4.49068 4.86758 4.94699 5.06676 5.17742 5.30618 5.38765 5.42713 5.46638 5.53065 5.58776 5.77414 5.84993 5.86796 5.92199 6.04345 6.10523 6.14886 6.26230 6.30977 6.43097 6.45040 6.49883 6.59436 6.75440 6.76285 6.93878 7.00472 7.59801 7.95858 8.25915 8.63476 8.69786 9.38348 9.89557 10.25782 11.27181 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.005838 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.354883 B = 4794.664715 C = 6408.437441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.086 0.914 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.049 0.951 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.222 4.222 10 H 0.067 0.933 11 C -0.008 4.008 12 N -0.929 5.929 13 Si 0.897 3.103 14 H -0.293 1.293 15 H -0.292 1.292 16 H -0.284 1.284 17 N -0.688 5.688 18 C 0.569 3.431 19 O -0.552 6.552 20 C -0.076 4.076 21 C -0.012 4.012 22 C -0.071 4.071 23 C 0.034 3.966 24 N -0.358 5.358 25 O 0.361 5.639 26 N -0.347 5.347 27 C 0.011 3.989 28 C -0.023 4.023 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.376 0.624 38 H 0.255 0.745 39 H 0.405 0.595 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -0.346 -0.803 9.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.104 0.896 4 C -0.173 4.173 5 C 0.058 3.942 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.359 5.359 9 C -0.353 4.353 10 H 0.085 0.915 11 C -0.203 4.203 12 N -0.579 5.579 13 Si 0.729 3.271 14 H -0.220 1.220 15 H -0.218 1.218 16 H -0.210 1.210 17 N -0.340 5.340 18 C 0.356 3.644 19 O -0.431 6.431 20 C -0.083 4.083 21 C -0.035 4.035 22 C -0.091 4.091 23 C -0.120 4.120 24 N -0.083 5.083 25 O 0.128 5.872 26 N -0.070 5.070 27 C -0.141 4.141 28 C -0.044 4.044 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.210 0.790 38 H 0.065 0.935 39 H 0.244 0.756 40 H 0.173 0.827 41 H 0.165 0.835 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.180 0.581 0.359 9.206 hybrid contribution 1.169 -0.471 -0.414 1.327 sum -8.011 0.110 -0.054 8.012 Atomic orbital electron populations 1.22213 0.95999 1.01794 1.02148 1.20872 0.92661 0.97835 0.84194 0.89607 1.22224 0.97792 1.00674 0.96583 1.20309 0.89682 0.95987 0.88191 0.93274 1.22408 1.01572 1.00355 0.98001 1.42456 1.18716 1.39901 1.34866 1.19205 0.93128 1.12807 1.10176 0.91453 1.24463 0.98281 0.98677 0.98860 1.69480 1.37677 1.24523 1.26196 0.86336 0.84742 0.77320 0.78749 1.22044 1.21826 1.20967 1.45904 1.65127 1.14445 1.08547 1.17873 0.77194 0.86140 0.83212 1.90722 1.51552 1.15434 1.85425 1.19925 1.00321 0.94637 0.93418 1.20971 0.92199 0.91837 0.98477 1.20653 1.01810 1.00475 0.86212 1.24269 1.00306 0.93384 0.94047 1.75120 1.19944 1.08672 1.04545 1.85337 1.56280 1.09314 1.36308 1.75169 1.14861 1.09311 1.07616 1.22630 1.04665 0.93971 0.92804 1.20076 0.96487 1.00416 0.87432 0.92676 0.92287 0.91948 0.91631 0.90582 0.93566 0.94536 0.92852 0.78958 0.93465 0.75591 0.82651 0.83479 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.15 0.35 -1.56 16 2 C 0.15 2.11 2.57 -67.93 -0.17 1.94 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.13 -1.75 4.43 -26.73 -0.12 -1.87 16 5 C 0.17 2.81 2.89 -67.93 -0.20 2.61 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 C -0.16 -2.55 9.49 37.15 0.35 -2.20 16 8 N -0.72 -14.46 3.84 -53.43 -0.21 -14.67 16 9 C -0.22 -5.34 9.93 -15.06 -0.15 -5.49 16 10 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.93 -22.09 10.66 55.49 0.59 -21.50 16 13 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 N -0.69 -10.88 3.74 -54.77 -0.20 -11.08 16 18 C 0.57 10.31 7.72 -12.35 -0.10 10.21 16 19 O -0.55 -11.22 15.87 5.31 0.08 -11.13 16 20 C -0.08 -1.33 5.86 -105.05 -0.62 -1.94 16 21 C -0.01 -0.20 7.62 -39.48 -0.30 -0.50 16 22 C -0.07 -1.16 10.26 -37.79 -0.39 -1.55 16 23 C 0.03 0.59 7.94 -81.26 -0.65 -0.06 16 24 N -0.36 -6.09 12.28 32.76 0.40 -5.69 16 25 O 0.36 5.86 11.67 26.93 0.31 6.17 16 26 N -0.35 -5.93 12.29 31.88 0.39 -5.54 16 27 C 0.01 0.20 7.75 -83.07 -0.64 -0.44 16 28 C -0.02 -0.40 9.60 -38.85 -0.37 -0.77 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.38 7.55 5.70 -40.82 -0.23 7.32 16 38 H 0.26 6.18 8.31 -40.82 -0.34 5.84 16 39 H 0.40 6.25 4.40 -40.82 -0.18 6.07 16 40 H 0.16 2.52 5.71 -52.49 -0.30 2.22 16 41 H 0.15 2.18 8.06 -52.49 -0.42 1.75 16 42 H 0.15 2.54 7.52 -52.49 -0.39 2.15 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -26.48 350.60 -6.73 -33.20 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.27 Total: 10.51 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.09 Total: -1.91 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.98 Total: -58.47 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: 0.40 Total: -4.96 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.48 -6.73 -33.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135353948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.928 kcal (2) G-P(sol) polarization free energy of solvation -26.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds