Wall clock time and date at job start Tue Mar 31 2020 14:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47058 * 2 1 4 4 C 1.53003 * 109.47051 * 240.00694 * 2 1 3 5 5 C 1.52999 * 109.47324 * 174.99795 * 4 2 1 6 6 H 1.08996 * 109.47237 * 304.99971 * 5 4 2 7 7 C 1.52994 * 109.47279 * 184.99641 * 5 4 2 8 8 N 1.46506 * 109.47166 * 64.99751 * 5 4 2 9 9 C 1.36937 * 120.00001 * 205.00226 * 8 5 4 10 10 H 1.07999 * 119.99948 * 359.97438 * 9 8 5 11 11 C 1.38809 * 119.99761 * 180.02562 * 9 8 5 12 12 N 1.31622 * 120.00258 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99883 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47336 * 89.99707 * 13 11 9 15 15 H 1.48506 * 109.47123 * 209.99557 * 13 11 9 16 16 H 1.48502 * 109.47388 * 329.99604 * 13 11 9 17 17 N 1.46495 * 109.47534 * 120.00442 * 2 1 3 18 18 C 1.34778 * 120.00087 * 274.99980 * 17 2 1 19 19 O 1.21563 * 120.00035 * 359.97438 * 18 17 2 20 20 C 1.47795 * 120.00278 * 179.97438 * 18 17 2 21 21 C 1.41161 * 118.94627 * 359.94387 * 20 18 17 22 22 C 1.35403 * 121.76139 * 180.02562 * 21 20 18 23 23 C 1.45290 * 119.09546 * 0.03287 * 22 21 20 24 24 N 1.30880 * 138.53456 * 179.97438 * 23 22 21 25 25 O 1.21490 * 109.07504 * 180.02562 * 24 23 22 26 26 N 1.21479 * 116.30059 * 0.02562 * 25 24 23 27 27 C 1.31069 * 109.07595 * 0.02562 * 26 25 24 28 28 C 1.37768 * 118.95235 * 179.97438 * 20 18 17 29 29 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47276 * 299.99407 * 1 2 3 31 31 H 1.09001 * 109.47679 * 59.99662 * 1 2 3 32 32 H 1.09005 * 109.47079 * 294.99883 * 4 2 1 33 33 H 1.09004 * 109.47316 * 54.99249 * 4 2 1 34 34 H 1.09004 * 109.47553 * 300.00273 * 7 5 4 35 35 H 1.09005 * 109.47035 * 59.99817 * 7 5 4 36 36 H 1.08995 * 109.47295 * 179.97438 * 7 5 4 37 37 H 0.96998 * 119.99408 * 24.99718 * 8 5 4 38 38 H 0.96997 * 120.00260 * 180.02562 * 12 11 9 39 39 H 0.97005 * 119.99933 * 94.99851 * 17 2 1 40 40 H 1.07997 * 119.11915 * 0.03825 * 21 20 18 41 41 H 1.07994 * 120.45112 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.14092 * 0.25613 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 1 3.8570 0.4359 -1.2679 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3341 -0.1826 9 6 5.3944 -0.9855 0.2804 10 1 5.9389 -0.1793 -0.1886 11 6 5.9525 -1.6690 1.3518 12 7 5.2892 -2.6519 1.9231 13 14 7.6446 -1.1930 1.9839 14 1 7.5057 -0.1564 3.0382 15 1 8.3156 -2.3899 2.5520 16 1 8.4579 -0.6544 0.8642 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8584 1.1612 2.4117 20 6 2.6393 -0.7153 3.5639 21 6 2.9670 -2.0855 3.4757 22 6 3.4223 -2.7797 4.5454 23 6 3.5769 -2.0957 5.8178 24 7 3.9631 -2.3697 7.0380 25 8 3.8808 -1.3646 7.7155 26 7 3.4785 -0.3667 7.1516 27 6 3.2268 -0.6552 5.8980 28 6 2.7631 -0.0071 4.7391 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -1.7714 -1.2058 33 1 1.6052 -0.2616 -2.1371 34 1 3.7721 -2.2739 -2.6703 35 1 3.6262 -0.6884 -3.4659 36 1 5.1506 -1.1474 -2.6704 37 1 3.6647 -2.0584 0.2383 38 1 5.6790 -3.1292 2.6721 39 1 2.2491 -1.6319 1.1524 40 1 2.8516 -2.5936 2.5298 41 1 3.6671 -3.8276 4.4539 42 1 2.4989 1.0396 4.7719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135353948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:44 Heat of formation + Delta-G solvation = 103.507825 kcal Electronic energy + Delta-G solvation = -27734.830665 eV Core-core repulsion = 23913.433127 eV Total energy + Delta-G solvation = -3821.397538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -47.72061 -41.23634 -39.10310 -38.17282 -35.89373 -35.77751 -34.59823 -33.79681 -32.13127 -31.87715 -30.17798 -27.59729 -27.20746 -25.97927 -25.49623 -23.15550 -22.29562 -21.77758 -21.48176 -20.03361 -19.95468 -19.06830 -19.01203 -18.21710 -17.29498 -16.65180 -16.06575 -15.83304 -15.62238 -15.41870 -15.31491 -15.18875 -14.54440 -14.32654 -14.19466 -13.81840 -13.68461 -13.52735 -13.27674 -13.13957 -12.93553 -12.92324 -12.88021 -12.75521 -12.58562 -12.25991 -12.22390 -12.14071 -11.66675 -11.56855 -11.36972 -11.00472 -10.95302 -10.74860 -9.91483 -9.53119 -8.75576 -7.83825 -5.00625 -1.17205 -0.04524 0.77684 1.40826 1.48153 1.49557 1.68631 1.89338 2.25305 2.45586 2.60207 2.62235 2.67579 3.50778 3.52043 3.66346 3.82790 3.88066 4.04510 4.12835 4.18429 4.22684 4.43165 4.52756 4.62690 4.73707 4.76149 4.89429 4.93470 4.96479 5.06853 5.14814 5.19471 5.21674 5.25238 5.42893 5.43579 5.47217 5.66608 5.66928 5.75398 6.42086 6.62817 7.27491 7.34190 7.52074 8.20617 8.50633 9.36849 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.005838 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.354883 B = 4794.664715 C = 6408.437441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.060 0.940 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.029 0.971 7 C -0.154 4.154 8 N -0.717 5.717 9 C -0.222 4.222 10 H 0.051 0.949 11 C -0.036 4.036 12 N -0.923 5.923 13 Si 0.922 3.078 14 H -0.312 1.312 15 H -0.298 1.298 16 H -0.286 1.286 17 N -0.678 5.678 18 C 0.563 3.437 19 O -0.581 6.581 20 C -0.081 4.081 21 C -0.012 4.012 22 C -0.065 4.065 23 C 0.023 3.977 24 N -0.358 5.358 25 O 0.379 5.621 26 N -0.350 5.350 27 C 0.000 4.000 28 C -0.030 4.030 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.408 0.592 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.817 -1.336 -2.061 11.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.047 0.953 7 C -0.214 4.214 8 N -0.360 5.360 9 C -0.354 4.354 10 H 0.069 0.931 11 C -0.231 4.231 12 N -0.573 5.573 13 Si 0.756 3.244 14 H -0.241 1.241 15 H -0.224 1.224 16 H -0.212 1.212 17 N -0.330 5.330 18 C 0.350 3.650 19 O -0.463 6.463 20 C -0.089 4.089 21 C -0.034 4.034 22 C -0.086 4.086 23 C -0.131 4.131 24 N -0.082 5.082 25 O 0.141 5.859 26 N -0.071 5.071 27 C -0.152 4.152 28 C -0.051 4.051 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.212 0.788 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.569 -0.425 -0.954 10.621 hybrid contribution 1.604 -0.123 -0.015 1.608 sum -8.966 -0.548 -0.970 9.034 Atomic orbital electron populations 1.22122 0.93576 1.03000 1.02466 1.21036 0.94491 0.96484 0.83958 0.92145 1.22143 0.94679 1.01841 0.97172 1.20500 0.92207 0.94482 0.87554 0.95274 1.22270 0.99956 1.00930 0.98245 1.42461 1.17576 1.40148 1.35849 1.19183 0.94463 1.11951 1.09827 0.93094 1.24676 0.98993 0.99636 0.99753 1.69491 1.37333 1.24412 1.26068 0.85946 0.84481 0.76188 0.77752 1.24140 1.22439 1.21169 1.45951 1.64090 1.14467 1.08458 1.18022 0.77140 0.85895 0.83944 1.90700 1.53115 1.16612 1.85922 1.20014 1.00429 0.95136 0.93299 1.20997 0.92203 0.91367 0.98828 1.20895 1.00840 1.01250 0.85610 1.24471 1.00634 0.93436 0.94522 1.75112 1.19827 1.08821 1.04441 1.85327 1.55569 1.09060 1.35952 1.75161 1.14903 1.09480 1.07516 1.22714 1.05134 0.94310 0.92995 1.20125 0.96810 1.00592 0.87595 0.90968 0.94089 0.89559 0.90032 0.87273 0.93115 0.91492 0.95471 0.78811 0.93929 0.75239 0.82061 0.81675 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.48 71.98 0.68 -2.50 16 2 C 0.14 3.82 2.57 44.99 0.12 3.94 16 3 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 4 C -0.12 -2.74 4.43 30.60 0.14 -2.61 16 5 C 0.16 5.09 2.89 44.99 0.13 5.22 16 6 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 7 C -0.15 -4.45 9.49 71.98 0.68 -3.77 16 8 N -0.72 -28.16 3.84 -322.95 -1.24 -29.40 16 9 C -0.22 -10.62 9.93 84.03 0.83 -9.78 16 10 H 0.05 2.58 7.83 -2.91 -0.02 2.56 16 11 C -0.04 -1.75 5.50 84.86 0.47 -1.28 16 12 N -0.92 -42.97 10.66 21.65 0.23 -42.74 16 13 Si 0.92 43.87 29.55 68.60 2.03 45.90 16 14 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 15 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 17 N -0.68 -20.71 3.74 -445.46 -1.67 -22.38 16 18 C 0.56 20.35 7.72 86.77 0.67 21.02 16 19 O -0.58 -23.97 15.87 -3.91 -0.06 -24.04 16 20 C -0.08 -2.85 5.86 -20.14 -0.12 -2.97 16 21 C -0.01 -0.38 7.62 22.33 0.17 -0.21 16 22 C -0.07 -2.07 10.26 23.43 0.24 -1.83 16 23 C 0.02 0.77 7.94 43.83 0.35 1.12 16 24 N -0.36 -11.80 12.28 -54.91 -0.67 -12.48 16 25 O 0.38 11.93 11.67 139.31 1.63 13.55 16 26 N -0.35 -11.76 12.29 -57.39 -0.71 -12.46 16 27 C 0.00 -0.01 7.75 42.57 0.33 0.32 16 28 C -0.03 -1.04 9.60 22.75 0.22 -0.83 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.38 14.53 5.70 -92.71 -0.53 14.00 16 38 H 0.25 11.86 8.31 -92.71 -0.77 11.09 16 39 H 0.41 11.94 4.40 -92.70 -0.41 11.53 16 40 H 0.16 5.00 5.71 -2.91 -0.02 4.99 16 41 H 0.17 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.15 5.23 7.52 -2.91 -0.02 5.20 16 Total: -1.00 -56.50 350.60 4.58 -51.93 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.14 Total: 26.25 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 4.91 Total: 5.88 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.06 Total: -119.46 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 1.56 Total: -10.48 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -56.50 4.58 -51.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135353948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.434 kcal (2) G-P(sol) polarization free energy of solvation -56.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds