Wall clock time and date at job start Tue Mar 31 2020 13:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47333 * 2 1 4 4 N 1.46499 * 109.47453 * 120.00478 * 2 1 3 5 5 C 1.39089 * 119.99922 * 275.00101 * 4 2 1 6 6 C 1.38744 * 119.65344 * 359.97438 * 5 4 2 7 7 C 1.40782 * 118.66792 * 180.02562 * 6 5 4 8 8 C 1.41546 * 120.99339 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00096 * 336.12080 * 8 7 6 10 10 C 1.40029 * 120.00418 * 156.11852 * 8 7 6 11 11 N 1.30750 * 119.99396 * 343.17409 * 10 8 7 12 12 Si 1.86790 * 120.00305 * 163.16905 * 10 8 7 13 13 H 1.48496 * 109.47425 * 60.00172 * 12 10 8 14 14 H 1.48498 * 109.47196 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.47217 * 300.00124 * 12 10 8 16 16 C 1.41189 * 118.00913 * 359.97438 * 7 6 5 17 17 C 1.36545 * 119.14944 * 0.02562 * 16 7 6 18 18 N 1.32095 * 121.26875 * 359.71981 * 17 16 7 19 19 C 1.50706 * 109.47001 * 240.00122 * 2 1 3 20 20 C 1.39382 * 119.50399 * 280.00373 * 19 2 1 21 21 C 1.36096 * 120.98646 * 179.97438 * 20 19 2 22 22 C 1.40544 * 119.65464 * 359.97438 * 21 20 19 23 23 C 1.40531 * 121.28833 * 180.02562 * 22 21 20 24 24 C 1.36095 * 119.65638 * 179.97438 * 23 22 21 25 25 C 1.39377 * 120.98522 * 359.97438 * 24 23 22 26 26 C 1.36086 * 120.98910 * 0.02562 * 25 24 23 27 27 C 1.40538 * 119.65528 * 359.95695 * 26 25 24 28 28 C 1.36084 * 119.50588 * 99.99983 * 19 2 1 29 29 H 1.08997 * 109.47142 * 59.99973 * 1 2 3 30 30 H 1.09003 * 109.46754 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46888 * 299.99711 * 1 2 3 32 32 H 0.96998 * 120.00563 * 94.99167 * 4 2 1 33 33 H 1.08003 * 120.66623 * 359.97438 * 6 5 4 34 34 H 0.97003 * 119.99860 * 179.97438 * 11 10 8 35 35 H 1.08002 * 120.41810 * 179.97438 * 16 7 6 36 36 H 1.08004 * 119.36819 * 179.97438 * 17 16 7 37 37 H 1.07997 * 119.50624 * 0.24372 * 20 19 2 38 38 H 1.07994 * 120.16994 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.17740 * 359.95620 * 23 22 21 40 40 H 1.08000 * 119.51099 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.50578 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.17423 * 179.97438 * 26 25 24 43 43 H 1.08007 * 120.17425 * 0.04334 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1513 0.0031 2.3942 6 6 1.8197 1.3492 2.4484 7 6 1.9626 2.0313 3.6716 8 6 1.6393 3.4049 3.7823 9 1 1.6529 4.0353 2.9055 10 6 1.3016 3.9465 5.0287 11 7 0.9635 3.1570 6.0146 12 14 1.3343 5.7968 5.2829 13 1 0.3843 6.4426 4.3420 14 1 0.9396 6.1116 6.6794 15 1 2.7058 6.3071 5.0296 16 6 2.4382 1.3043 4.7846 17 6 2.7392 -0.0192 4.6351 18 7 2.5885 -0.6297 3.4734 19 6 2.0323 -0.7104 -1.2305 20 6 2.0625 -2.1037 -1.2545 21 6 2.5097 -2.7761 -2.3500 22 6 2.9479 -2.0579 -3.4758 23 6 3.4159 -2.7171 -4.6253 24 6 3.8319 -1.9886 -5.6970 25 6 3.8007 -0.5954 -5.6733 26 6 3.3539 0.0769 -4.5776 27 6 2.9159 -0.6413 -3.4519 28 6 2.4496 0.0180 -2.3016 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6319 1.1526 33 1 1.4599 1.8637 1.5696 34 1 0.7300 3.5321 6.8781 35 1 2.5630 1.7890 5.7416 36 1 3.1036 -0.5786 5.4841 37 1 1.7218 -2.6580 -0.3926 38 1 2.5277 -3.8559 -2.3542 39 1 3.4457 -3.7962 -4.6581 40 1 4.1907 -2.4976 -6.5794 41 1 4.1369 -0.0410 -6.5370 42 1 3.3359 1.1568 -4.5733 43 1 2.4212 1.0972 -2.2684 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156135879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:47 Heat of formation + Delta-G solvation = 69.073939 kcal Electronic energy + Delta-G solvation = -24664.941775 eV Core-core repulsion = 21252.900334 eV Total energy + Delta-G solvation = -3412.041441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.54823 -38.65099 -37.36010 -35.10495 -33.93435 -32.84128 -31.12398 -30.55443 -29.72447 -28.63900 -27.48638 -25.85874 -23.92906 -23.43162 -22.05447 -21.91448 -21.04549 -20.21782 -17.73272 -17.37030 -17.00726 -16.45318 -15.54508 -15.25149 -14.89159 -14.79215 -14.34059 -14.12426 -13.79609 -13.69937 -13.48937 -13.37100 -13.17583 -13.02411 -12.67769 -12.34932 -12.26192 -12.00696 -11.78107 -11.42885 -11.31262 -11.19619 -11.11355 -10.96844 -10.79471 -10.58868 -10.30290 -10.05238 -9.79213 -9.41204 -8.98396 -8.60248 -7.96683 -7.95124 -7.87702 -6.82330 -6.45118 -4.54404 0.44413 0.91054 1.96921 2.82302 2.87968 3.03622 3.05970 3.08931 3.37594 3.88131 3.96626 4.11832 4.47968 4.65924 4.72197 4.73232 4.81654 4.97678 5.09787 5.24670 5.27305 5.30812 5.56470 5.59585 5.66118 5.83937 5.85088 5.87213 5.99899 6.08835 6.11059 6.14036 6.22308 6.33362 6.46346 6.50456 6.59781 6.73208 6.81010 6.90284 6.92995 6.98050 7.03406 7.29068 7.57425 7.84508 8.06179 8.11667 8.45460 8.72003 8.84808 8.92197 9.79739 10.12664 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.002676 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.758553 B =10462.159550 C =11313.242720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.199 3.801 3 H 0.088 0.912 4 N -0.738 5.738 5 C 0.400 3.600 6 C -0.336 4.336 7 C 0.156 3.844 8 C -0.457 4.457 9 H 0.078 0.922 10 C 0.079 3.921 11 N -0.784 5.784 12 Si 0.910 3.090 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.263 1.263 16 C -0.245 4.245 17 C 0.116 3.884 18 N -0.624 5.624 19 C -0.072 4.072 20 C -0.101 4.101 21 C -0.108 4.108 22 C -0.055 4.055 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.048 4.048 28 C -0.100 4.100 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.388 0.612 33 H 0.098 0.902 34 H 0.282 0.718 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -6.518 -17.794 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.093 3.907 3 H 0.106 0.894 4 N -0.374 5.374 5 C 0.170 3.830 6 C -0.363 4.363 7 C 0.148 3.852 8 C -0.488 4.488 9 H 0.097 0.903 10 C -0.141 4.141 11 N -0.409 5.409 12 Si 0.734 3.266 13 H -0.189 1.189 14 H -0.203 1.203 15 H -0.187 1.187 16 C -0.269 4.269 17 C -0.034 4.034 18 N -0.348 5.348 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.055 4.055 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.048 4.048 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.223 0.777 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.145 0.855 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.027 -7.259 -17.661 19.202 hybrid contribution -0.204 1.347 0.306 1.397 sum 1.822 -5.912 -17.356 18.425 Atomic orbital electron populations 1.22277 0.95312 1.02097 1.02429 1.19599 0.93459 0.96187 0.81485 0.89387 1.44225 1.75132 1.11771 1.06310 1.17908 0.91557 0.88328 0.85245 1.21146 1.21723 0.93360 1.00025 1.17592 0.84834 0.92700 0.90069 1.19539 1.40962 0.94063 0.94254 0.90342 1.25959 0.92108 1.00599 0.95390 1.69801 1.30302 1.37591 1.03232 0.86343 0.79928 0.82243 0.78078 1.18931 1.20260 1.18735 1.21773 1.08933 0.95087 1.01139 1.21344 0.96757 0.92609 0.92647 1.66731 1.28376 1.40263 0.99403 1.19831 0.97911 0.93874 0.95677 1.20722 0.99019 0.93873 0.98286 1.20982 0.99301 0.99591 0.92733 1.18101 0.99878 0.92700 0.94795 1.21015 0.98880 0.99668 0.92814 1.20816 1.00447 0.94185 0.98585 1.20821 1.00299 0.94456 0.98415 1.21056 0.98574 0.99813 0.92715 1.18067 0.99496 0.92639 0.94602 1.20889 0.98770 0.99913 0.92276 0.92388 0.92728 0.91003 0.77670 0.88386 0.90688 0.85996 0.86502 0.85755 0.85570 0.85772 0.86228 0.86159 0.85548 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.38 37.16 0.35 -2.05 16 2 C 0.20 3.12 2.44 -69.08 -0.17 2.96 16 3 H 0.09 1.47 6.26 -51.93 -0.33 1.14 16 4 N -0.74 -13.75 5.19 -55.11 -0.29 -14.04 16 5 C 0.40 9.33 7.63 -154.98 -1.18 8.15 16 6 C -0.34 -8.27 8.63 -38.43 -0.33 -8.60 16 7 C 0.16 4.19 5.60 -106.56 -0.60 3.60 16 8 C -0.46 -12.01 9.12 -37.65 -0.34 -12.35 16 9 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 10 C 0.08 1.96 5.20 -17.34 -0.09 1.87 16 11 N -0.78 -20.00 10.92 55.55 0.61 -19.39 16 12 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 13 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 14 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 15 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 16 C -0.24 -6.45 8.74 -39.07 -0.34 -6.79 16 17 C 0.12 2.85 11.10 -18.05 -0.20 2.65 16 18 N -0.62 -15.37 10.36 -12.82 -0.13 -15.51 16 19 C -0.07 -0.98 4.92 -104.97 -0.52 -1.50 16 20 C -0.10 -1.27 8.94 -39.93 -0.36 -1.62 16 21 C -0.11 -1.23 9.77 -39.48 -0.39 -1.61 16 22 C -0.05 -0.65 5.74 -106.84 -0.61 -1.26 16 23 C -0.11 -1.04 9.77 -39.49 -0.39 -1.42 16 24 C -0.12 -1.09 9.95 -39.93 -0.40 -1.49 16 25 C -0.12 -1.11 9.95 -39.93 -0.40 -1.51 16 26 C -0.10 -1.07 9.77 -39.49 -0.39 -1.46 16 27 C -0.05 -0.59 5.74 -106.83 -0.61 -1.20 16 28 C -0.10 -1.27 9.36 -39.49 -0.37 -1.64 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.23 7.66 -51.93 -0.40 0.83 16 32 H 0.39 6.78 6.95 -40.82 -0.28 6.50 16 33 H 0.10 2.25 6.08 -52.48 -0.32 1.93 16 34 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 35 H 0.12 3.26 6.20 -52.49 -0.33 2.94 16 36 H 0.12 2.55 8.06 -52.48 -0.42 2.12 16 37 H 0.12 1.48 6.88 -52.49 -0.36 1.12 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.13 1.45 8.00 -52.48 -0.42 1.03 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -29.55 357.98 -12.14 -41.69 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.36 Total: 13.86 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -7.33 Total: -25.29 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.19 Total: -48.94 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.55 -12.14 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156135879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.760 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds