Wall clock time and date at job start Tue Mar 31 2020 13:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47333 * 2 1 4 4 N 1.46499 * 109.47453 * 120.00478 * 2 1 3 5 5 C 1.39089 * 119.99922 * 275.00101 * 4 2 1 6 6 C 1.38744 * 119.65344 * 359.97438 * 5 4 2 7 7 C 1.40782 * 118.66792 * 180.02562 * 6 5 4 8 8 C 1.41546 * 120.99339 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00096 * 336.12080 * 8 7 6 10 10 C 1.40029 * 120.00418 * 156.11852 * 8 7 6 11 11 N 1.30750 * 119.99396 * 343.17409 * 10 8 7 12 12 Si 1.86790 * 120.00305 * 163.16905 * 10 8 7 13 13 H 1.48496 * 109.47425 * 60.00172 * 12 10 8 14 14 H 1.48498 * 109.47196 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.47217 * 300.00124 * 12 10 8 16 16 C 1.41189 * 118.00913 * 359.97438 * 7 6 5 17 17 C 1.36545 * 119.14944 * 0.02562 * 16 7 6 18 18 N 1.32095 * 121.26875 * 359.71981 * 17 16 7 19 19 C 1.50706 * 109.47001 * 240.00122 * 2 1 3 20 20 C 1.39382 * 119.50399 * 280.00373 * 19 2 1 21 21 C 1.36096 * 120.98646 * 179.97438 * 20 19 2 22 22 C 1.40544 * 119.65464 * 359.97438 * 21 20 19 23 23 C 1.40531 * 121.28833 * 180.02562 * 22 21 20 24 24 C 1.36095 * 119.65638 * 179.97438 * 23 22 21 25 25 C 1.39377 * 120.98522 * 359.97438 * 24 23 22 26 26 C 1.36086 * 120.98910 * 0.02562 * 25 24 23 27 27 C 1.40538 * 119.65528 * 359.95695 * 26 25 24 28 28 C 1.36084 * 119.50588 * 99.99983 * 19 2 1 29 29 H 1.08997 * 109.47142 * 59.99973 * 1 2 3 30 30 H 1.09003 * 109.46754 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46888 * 299.99711 * 1 2 3 32 32 H 0.96998 * 120.00563 * 94.99167 * 4 2 1 33 33 H 1.08003 * 120.66623 * 359.97438 * 6 5 4 34 34 H 0.97003 * 119.99860 * 179.97438 * 11 10 8 35 35 H 1.08002 * 120.41810 * 179.97438 * 16 7 6 36 36 H 1.08004 * 119.36819 * 179.97438 * 17 16 7 37 37 H 1.07997 * 119.50624 * 0.24372 * 20 19 2 38 38 H 1.07994 * 120.16994 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.17740 * 359.95620 * 23 22 21 40 40 H 1.08000 * 119.51099 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.50578 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.17423 * 179.97438 * 26 25 24 43 43 H 1.08007 * 120.17425 * 0.04334 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1513 0.0031 2.3942 6 6 1.8197 1.3492 2.4484 7 6 1.9626 2.0313 3.6716 8 6 1.6393 3.4049 3.7823 9 1 1.6529 4.0353 2.9055 10 6 1.3016 3.9465 5.0287 11 7 0.9635 3.1570 6.0146 12 14 1.3343 5.7968 5.2829 13 1 0.3843 6.4426 4.3420 14 1 0.9396 6.1116 6.6794 15 1 2.7058 6.3071 5.0296 16 6 2.4382 1.3043 4.7846 17 6 2.7392 -0.0192 4.6351 18 7 2.5885 -0.6297 3.4734 19 6 2.0323 -0.7104 -1.2305 20 6 2.0625 -2.1037 -1.2545 21 6 2.5097 -2.7761 -2.3500 22 6 2.9479 -2.0579 -3.4758 23 6 3.4159 -2.7171 -4.6253 24 6 3.8319 -1.9886 -5.6970 25 6 3.8007 -0.5954 -5.6733 26 6 3.3539 0.0769 -4.5776 27 6 2.9159 -0.6413 -3.4519 28 6 2.4496 0.0180 -2.3016 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6319 1.1526 33 1 1.4599 1.8637 1.5696 34 1 0.7300 3.5321 6.8781 35 1 2.5630 1.7890 5.7416 36 1 3.1036 -0.5786 5.4841 37 1 1.7218 -2.6580 -0.3926 38 1 2.5277 -3.8559 -2.3542 39 1 3.4457 -3.7962 -4.6581 40 1 4.1907 -2.4976 -6.5794 41 1 4.1369 -0.0410 -6.5370 42 1 3.3359 1.1568 -4.5733 43 1 2.4212 1.0972 -2.2684 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156135879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:46 Heat of formation + Delta-G solvation = 56.018920 kcal Electronic energy + Delta-G solvation = -24665.507883 eV Core-core repulsion = 21252.900334 eV Total energy + Delta-G solvation = -3412.607549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43976 -40.35967 -38.55090 -36.45375 -35.67594 -33.73981 -32.66741 -32.25550 -30.60757 -29.71475 -29.15085 -27.80446 -25.02820 -24.32194 -23.52974 -22.97755 -22.68737 -21.61775 -19.50845 -18.24588 -18.12694 -17.75011 -17.02772 -16.67280 -16.39446 -15.94636 -15.67706 -15.50815 -15.18165 -14.96465 -14.64039 -14.49119 -14.29709 -14.19556 -14.09535 -13.91211 -13.66419 -13.16321 -13.07115 -12.95903 -12.84936 -12.65149 -12.22431 -12.06308 -11.98912 -11.81953 -11.73337 -11.61883 -11.24084 -10.90509 -10.68157 -9.92432 -9.82859 -9.47467 -8.79918 -8.69340 -8.23586 -6.53997 -0.38014 0.05294 0.99116 1.12963 1.20479 1.39095 1.51105 1.62233 2.03159 2.19412 2.54689 2.81881 3.19310 3.54927 3.72191 3.83751 3.95627 4.07057 4.09482 4.23097 4.31619 4.34159 4.37275 4.45841 4.50419 4.59707 4.71022 4.85670 4.90241 4.94100 5.01862 5.04137 5.06228 5.14809 5.17523 5.27640 5.31436 5.33817 5.34709 5.55882 5.62866 5.64713 5.68591 5.91012 5.92745 6.10770 6.13462 6.39849 6.55691 6.87634 6.91073 7.05577 7.88988 8.28012 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.002676 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.758553 B =10462.159550 C =11313.242720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.201 3.799 3 H 0.074 0.926 4 N -0.726 5.726 5 C 0.402 3.598 6 C -0.352 4.352 7 C 0.128 3.872 8 C -0.489 4.489 9 H 0.079 0.921 10 C 0.038 3.962 11 N -0.812 5.812 12 Si 0.987 3.013 13 H -0.258 1.258 14 H -0.265 1.265 15 H -0.260 1.260 16 C -0.271 4.271 17 C 0.116 3.884 18 N -0.636 5.636 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.103 4.103 22 C -0.073 4.073 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.067 4.067 28 C -0.106 4.106 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.396 0.604 33 H 0.105 0.895 34 H 0.291 0.709 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 -6.781 -20.072 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.095 3.905 3 H 0.092 0.908 4 N -0.362 5.362 5 C 0.169 3.831 6 C -0.379 4.379 7 C 0.120 3.880 8 C -0.519 4.519 9 H 0.098 0.902 10 C -0.179 4.179 11 N -0.438 5.438 12 Si 0.807 3.193 13 H -0.182 1.182 14 H -0.190 1.190 15 H -0.184 1.184 16 C -0.296 4.296 17 C -0.034 4.034 18 N -0.360 5.360 19 C -0.086 4.086 20 C -0.137 4.137 21 C -0.120 4.120 22 C -0.073 4.073 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.067 4.067 28 C -0.125 4.125 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.232 0.768 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.160 0.840 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.464 -7.553 -19.984 21.505 hybrid contribution -0.307 1.327 0.831 1.595 sum 2.157 -6.226 -19.153 20.255 Atomic orbital electron populations 1.22180 0.94587 1.02476 1.02036 1.19658 0.93961 0.95519 0.81339 0.90826 1.44319 1.74102 1.12045 1.05693 1.18149 0.90265 0.88356 0.86286 1.21249 1.22656 0.94128 0.99835 1.18005 0.85379 0.93583 0.91074 1.19827 1.42349 0.94315 0.95428 0.90250 1.26864 0.90920 1.05666 0.94440 1.69850 1.30118 1.39912 1.03877 0.85190 0.80018 0.75579 0.78558 1.18163 1.18950 1.18415 1.21746 1.11042 0.95990 1.00777 1.21725 0.95771 0.92325 0.93562 1.66876 1.29143 1.40262 0.99729 1.19606 0.99694 0.94420 0.94881 1.20764 1.00337 0.93434 0.99122 1.21263 0.97923 1.00832 0.92017 1.18422 1.00271 0.92787 0.95780 1.21328 0.98532 1.01033 0.92276 1.21239 0.99134 0.94265 0.99245 1.21221 0.98802 0.94988 0.98660 1.21292 0.99122 1.00692 0.92722 1.18301 1.00084 0.93323 0.95001 1.21022 0.98640 1.00328 0.92476 0.90224 0.91932 0.93813 0.76832 0.87684 0.89772 0.87103 0.83958 0.85590 0.83112 0.83482 0.83326 0.83547 0.84322 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 9.38 71.98 0.68 -3.93 16 2 C 0.20 6.42 2.44 44.25 0.11 6.53 16 3 H 0.07 2.56 6.26 -2.39 -0.01 2.54 16 4 N -0.73 -27.49 5.19 -328.27 -1.70 -29.20 16 5 C 0.40 19.17 7.63 132.90 1.01 20.19 16 6 C -0.35 -18.01 8.63 23.01 0.20 -17.81 16 7 C 0.13 7.12 5.60 -21.12 -0.12 7.01 16 8 C -0.49 -26.49 9.12 23.52 0.21 -26.27 16 9 H 0.08 4.12 7.90 -2.91 -0.02 4.09 16 10 C 0.04 1.92 5.20 85.29 0.44 2.37 16 11 N -0.81 -42.23 10.92 21.84 0.24 -41.99 16 12 Si 0.99 37.53 29.59 68.60 2.03 39.56 16 13 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 14 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 15 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 16 C -0.27 -14.78 8.74 22.60 0.20 -14.58 16 17 C 0.12 5.82 11.10 84.26 0.94 6.76 16 18 N -0.64 -31.76 10.36 -194.48 -2.02 -33.78 16 19 C -0.09 -2.33 4.92 -20.09 -0.10 -2.43 16 20 C -0.12 -2.91 8.94 22.05 0.20 -2.71 16 21 C -0.10 -2.18 9.77 22.33 0.22 -1.96 16 22 C -0.07 -1.59 5.74 -21.30 -0.12 -1.72 16 23 C -0.11 -1.91 9.77 22.33 0.22 -1.69 16 24 C -0.12 -1.74 9.95 22.05 0.22 -1.52 16 25 C -0.12 -1.82 9.95 22.04 0.22 -1.60 16 26 C -0.12 -2.30 9.77 22.33 0.22 -2.08 16 27 C -0.07 -1.58 5.74 -21.30 -0.12 -1.70 16 28 C -0.11 -2.69 9.36 22.33 0.21 -2.48 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 32 H 0.40 13.87 6.95 -92.71 -0.64 13.22 16 33 H 0.11 5.06 6.08 -2.91 -0.02 5.04 16 34 H 0.29 13.59 8.29 -92.71 -0.77 12.83 16 35 H 0.11 6.18 6.20 -2.91 -0.02 6.17 16 36 H 0.14 6.22 8.06 -2.91 -0.02 6.20 16 37 H 0.13 2.94 6.88 -2.91 -0.02 2.92 16 38 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 43 H 0.14 3.08 8.00 -2.91 -0.02 3.06 16 Total: -1.00 -65.28 357.98 3.77 -61.51 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: 0.39 Total: 43.54 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 4.82 Total: -39.64 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.48 Total: -104.97 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -65.28 3.77 -61.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156135879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.530 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds