Wall clock time and date at job start Tue Mar 31 2020 14:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46939 * 2 1 4 4 C 1.34920 * 116.99999 * 180.02562 * 3 2 1 5 5 O 1.21662 * 119.99792 * 359.97438 * 4 3 2 6 6 C 1.46174 * 119.99768 * 180.02562 * 4 3 2 7 7 C 1.39627 * 127.58678 * 6.29608 * 6 4 3 8 8 N 1.32125 * 109.38265 * 179.97438 * 7 6 4 9 9 C 1.32487 * 112.28689 * 0.02562 * 8 7 6 10 10 N 1.37799 * 134.02826 * 179.97438 * 9 8 7 11 11 H 0.97007 * 120.06030 * 0.02562 * 10 9 8 12 12 C 1.34264 * 119.88437 * 180.02562 * 10 9 8 13 13 N 1.30792 * 122.59332 * 0.02562 * 12 10 9 14 14 C 1.33812 * 121.65434 * 0.02562 * 13 12 10 15 15 N 1.37269 * 120.48488 * 180.02562 * 14 13 12 16 16 C 1.46500 * 119.99932 * 354.33741 * 15 14 13 17 17 C 1.53004 * 109.47106 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46949 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.47127 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99609 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00418 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99508 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47284 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47094 * 119.99957 * 23 21 19 26 26 H 1.48498 * 109.47122 * 239.99840 * 23 21 19 27 27 C 1.39942 * 119.03206 * 359.97438 * 14 13 12 28 28 H 1.08994 * 109.47638 * 59.99801 * 1 2 3 29 29 H 1.09002 * 109.46897 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47140 * 299.99390 * 1 2 3 31 31 H 1.08996 * 109.47339 * 240.00320 * 2 1 3 32 32 H 1.09003 * 109.47535 * 119.99934 * 2 1 3 33 33 H 1.08001 * 125.30922 * 0.22402 * 7 6 4 34 34 H 1.07997 * 118.70826 * 179.97438 * 12 10 9 35 35 H 0.97006 * 120.00267 * 174.33881 * 15 14 13 36 36 H 1.08994 * 109.47288 * 300.00122 * 16 15 14 37 37 H 1.09003 * 109.47108 * 60.00365 * 16 15 14 38 38 H 1.08994 * 109.47136 * 300.00202 * 17 16 15 39 39 H 1.09003 * 109.46849 * 60.00194 * 17 16 15 40 40 H 1.09003 * 109.47062 * 299.99681 * 18 17 16 41 41 H 1.08996 * 109.47576 * 59.99986 * 18 17 16 42 42 H 0.97001 * 119.99462 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3438 1.5241 -0.0005 5 8 4.0849 0.5593 -0.0005 6 6 3.9024 2.8749 0.0000 7 6 3.2116 4.0822 0.1224 8 7 4.0705 5.0852 0.0779 9 6 5.3203 4.6705 -0.0681 10 7 6.5366 5.3108 -0.1654 11 1 6.5804 6.2791 -0.1280 12 6 7.6611 4.5920 -0.3120 13 7 7.6596 3.2853 -0.3689 14 6 6.5257 2.5800 -0.2839 15 7 6.5521 1.2089 -0.3459 16 6 7.8094 0.5126 -0.6299 17 6 7.5642 -0.9976 -0.6432 18 6 8.8774 -1.7248 -0.9392 19 6 8.6359 -3.2123 -0.9529 20 1 7.6449 -3.6001 -0.7684 21 6 9.6801 -4.0781 -1.1999 22 7 10.8869 -3.6057 -1.4240 23 14 9.3808 -5.9218 -1.2161 24 1 7.9477 -6.1932 -0.9372 25 1 9.7386 -6.4696 -2.5492 26 1 10.2184 -6.5684 -0.1742 27 6 5.3126 3.2604 -0.1299 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1425 4.1805 0.2396 34 1 8.6040 5.1133 -0.3867 35 1 5.7383 0.7011 -0.2016 36 1 8.1874 0.8275 -1.6025 37 1 8.5413 0.7555 0.1404 38 1 7.1860 -1.3128 0.3292 39 1 6.8324 -1.2401 -1.4138 40 1 9.2560 -1.4096 -1.9116 41 1 9.6089 -1.4822 -0.1685 42 1 11.6215 -4.2148 -1.5981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:45 Heat of formation + Delta-G solvation = -2.130771 kcal Electronic energy + Delta-G solvation = -25914.613183 eV Core-core repulsion = 22088.634811 eV Total energy + Delta-G solvation = -3825.978372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.94602 -40.26094 -38.59558 -37.48438 -36.43884 -34.51948 -33.11274 -31.87433 -31.47769 -29.84011 -29.19102 -26.63222 -24.86241 -24.13562 -23.31287 -22.52016 -21.78145 -20.59386 -20.48523 -18.42417 -18.36650 -17.68618 -17.25150 -16.61639 -16.30916 -15.92212 -15.85750 -15.10133 -14.76408 -14.53658 -14.25422 -14.12560 -14.03776 -13.19540 -13.17238 -13.02179 -12.72581 -12.59616 -12.33514 -12.05870 -11.81874 -11.67665 -11.46272 -10.90897 -10.85345 -10.64856 -10.56563 -10.53303 -10.36275 -9.89649 -9.56547 -9.43494 -9.40994 -9.13004 -8.38702 -8.35606 -7.61269 -6.03583 -4.05842 0.25963 1.11572 2.18130 2.34187 2.75564 3.08504 3.29658 3.37161 3.42001 3.54877 3.56325 3.85490 4.33127 4.44420 4.66479 4.73986 4.83538 4.87812 5.07341 5.17004 5.17701 5.30167 5.32667 5.55461 5.63496 5.64669 5.66894 5.80737 5.95243 6.06269 6.31809 6.38137 6.47578 6.54672 6.63174 6.94199 6.96337 7.04890 7.27449 7.61203 7.71666 7.72749 7.95387 8.01654 8.22393 8.37489 9.00648 9.58462 11.07826 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010868 B = 0.003393 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.689202 B = 8249.539235 C =10781.512642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.345 6.345 4 C 0.548 3.452 5 O -0.534 6.534 6 C -0.256 4.256 7 C 0.122 3.878 8 N -0.536 5.536 9 C 0.269 3.731 10 N -0.561 5.561 11 H 0.424 0.576 12 C 0.415 3.585 13 N -0.568 5.568 14 C 0.510 3.490 15 N -0.645 5.645 16 C 0.104 3.896 17 C -0.122 4.122 18 C 0.027 3.973 19 C -0.521 4.521 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.241 4.241 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.171 0.829 34 H 0.223 0.777 35 H 0.431 0.569 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 19.141 2.818 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.261 6.261 4 C 0.399 3.601 5 O -0.427 6.427 6 C -0.265 4.265 7 C -0.033 4.033 8 N -0.255 5.255 9 C 0.032 3.968 10 N -0.173 5.173 11 H 0.262 0.738 12 C 0.127 3.873 13 N -0.297 5.297 14 C 0.263 3.737 15 N -0.280 5.280 16 C -0.019 4.019 17 C -0.161 4.161 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.255 4.255 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.189 0.811 34 H 0.239 0.761 35 H 0.290 0.710 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.053 18.871 2.729 22.557 hybrid contribution -0.668 -1.456 0.047 1.603 sum -12.721 17.415 2.776 21.744 Atomic orbital electron populations 1.21797 0.92683 1.02896 1.03366 1.22658 0.95282 0.80854 1.02777 1.86159 1.23528 1.31899 1.84526 1.20089 0.80035 0.88740 0.71272 1.90142 1.58911 1.43080 1.50542 1.19752 0.91043 0.90675 1.24994 1.22783 0.97883 0.86368 0.96307 1.68812 0.96857 1.34285 1.25578 1.18390 0.87212 0.87575 1.03665 1.41954 1.04295 1.12230 1.58823 0.73776 1.24817 0.89770 0.87920 0.84793 1.68070 1.27049 1.05239 1.29337 1.18503 0.87453 0.86318 0.81428 1.46799 1.16567 1.02327 1.62291 1.22013 0.84267 0.93978 1.01618 1.21911 1.02235 0.90415 1.01492 1.19021 0.90284 0.94568 0.97211 1.21252 0.95012 0.91391 1.48243 0.92546 1.25016 0.95152 0.98993 0.95272 1.69974 1.00056 1.34722 1.48657 0.86521 0.78341 0.85463 0.77615 1.19717 1.20973 1.20974 1.19431 0.92091 0.93246 1.20699 0.91535 0.90337 0.91561 0.91330 0.91372 0.81143 0.76131 0.71048 0.90882 0.90605 0.92515 0.92548 0.96242 0.96197 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.15 0.38 -0.82 16 2 C 0.06 0.66 6.10 37.15 0.23 0.89 16 3 O -0.34 -4.66 9.99 -41.09 -0.41 -5.07 16 4 C 0.55 8.72 7.90 33.92 0.27 8.99 16 5 O -0.53 -9.55 12.83 -19.39 -0.25 -9.80 16 6 C -0.26 -4.03 6.38 -102.75 -0.66 -4.69 16 7 C 0.12 1.72 11.74 -16.91 -0.20 1.52 16 8 N -0.54 -7.64 11.04 -11.77 -0.13 -7.77 16 9 C 0.27 3.52 8.48 -155.34 -1.32 2.20 16 10 N -0.56 -4.21 5.35 -13.38 -0.07 -4.28 16 11 H 0.42 1.49 8.93 -40.82 -0.36 1.12 16 12 C 0.42 2.83 12.29 -90.84 -1.12 1.72 16 13 N -0.57 -6.91 9.62 -13.51 -0.13 -7.04 16 14 C 0.51 7.85 7.50 -155.16 -1.16 6.69 16 15 N -0.64 -11.07 5.64 -60.32 -0.34 -11.41 16 16 C 0.10 1.85 5.70 -4.04 -0.02 1.83 16 17 C -0.12 -2.57 5.27 -26.73 -0.14 -2.72 16 18 C 0.03 0.68 4.97 -27.88 -0.14 0.55 16 19 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 23 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C -0.24 -3.74 6.33 -104.71 -0.66 -4.40 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 32 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 33 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.22 0.13 8.06 -52.49 -0.42 -0.29 16 35 H 0.43 7.90 3.86 -43.68 -0.17 7.74 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -36.62 360.60 -10.70 -47.32 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.57 Total: 3.71 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -4.95 Total: -1.82 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.06 Total: -56.48 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.66 Total: -14.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.62 -10.70 -47.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.192 kcal (2) G-P(sol) polarization free energy of solvation -36.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds