Wall clock time and date at job start Tue Mar 31 2020 14:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46939 * 2 1 4 4 C 1.34920 * 116.99999 * 180.02562 * 3 2 1 5 5 O 1.21662 * 119.99792 * 359.97438 * 4 3 2 6 6 C 1.46174 * 119.99768 * 180.02562 * 4 3 2 7 7 C 1.39627 * 127.58678 * 6.29608 * 6 4 3 8 8 N 1.32125 * 109.38265 * 179.97438 * 7 6 4 9 9 C 1.32487 * 112.28689 * 0.02562 * 8 7 6 10 10 N 1.37799 * 134.02826 * 179.97438 * 9 8 7 11 11 H 0.97007 * 120.06030 * 0.02562 * 10 9 8 12 12 C 1.34264 * 119.88437 * 180.02562 * 10 9 8 13 13 N 1.30792 * 122.59332 * 0.02562 * 12 10 9 14 14 C 1.33812 * 121.65434 * 0.02562 * 13 12 10 15 15 N 1.37269 * 120.48488 * 180.02562 * 14 13 12 16 16 C 1.46500 * 119.99932 * 354.33741 * 15 14 13 17 17 C 1.53004 * 109.47106 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46949 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.47127 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99609 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00418 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99508 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47284 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47094 * 119.99957 * 23 21 19 26 26 H 1.48498 * 109.47122 * 239.99840 * 23 21 19 27 27 C 1.39942 * 119.03206 * 359.97438 * 14 13 12 28 28 H 1.08994 * 109.47638 * 59.99801 * 1 2 3 29 29 H 1.09002 * 109.46897 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47140 * 299.99390 * 1 2 3 31 31 H 1.08996 * 109.47339 * 240.00320 * 2 1 3 32 32 H 1.09003 * 109.47535 * 119.99934 * 2 1 3 33 33 H 1.08001 * 125.30922 * 0.22402 * 7 6 4 34 34 H 1.07997 * 118.70826 * 179.97438 * 12 10 9 35 35 H 0.97006 * 120.00267 * 174.33881 * 15 14 13 36 36 H 1.08994 * 109.47288 * 300.00122 * 16 15 14 37 37 H 1.09003 * 109.47108 * 60.00365 * 16 15 14 38 38 H 1.08994 * 109.47136 * 300.00202 * 17 16 15 39 39 H 1.09003 * 109.46849 * 60.00194 * 17 16 15 40 40 H 1.09003 * 109.47062 * 299.99681 * 18 17 16 41 41 H 1.08996 * 109.47576 * 59.99986 * 18 17 16 42 42 H 0.97001 * 119.99462 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3438 1.5241 -0.0005 5 8 4.0849 0.5593 -0.0005 6 6 3.9024 2.8749 0.0000 7 6 3.2116 4.0822 0.1224 8 7 4.0705 5.0852 0.0779 9 6 5.3203 4.6705 -0.0681 10 7 6.5366 5.3108 -0.1654 11 1 6.5804 6.2791 -0.1280 12 6 7.6611 4.5920 -0.3120 13 7 7.6596 3.2853 -0.3689 14 6 6.5257 2.5800 -0.2839 15 7 6.5521 1.2089 -0.3459 16 6 7.8094 0.5126 -0.6299 17 6 7.5642 -0.9976 -0.6432 18 6 8.8774 -1.7248 -0.9392 19 6 8.6359 -3.2123 -0.9529 20 1 7.6449 -3.6001 -0.7684 21 6 9.6801 -4.0781 -1.1999 22 7 10.8869 -3.6057 -1.4240 23 14 9.3808 -5.9218 -1.2161 24 1 7.9477 -6.1932 -0.9372 25 1 9.7386 -6.4696 -2.5492 26 1 10.2184 -6.5684 -0.1742 27 6 5.3126 3.2604 -0.1299 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1425 4.1805 0.2396 34 1 8.6040 5.1133 -0.3867 35 1 5.7383 0.7011 -0.2016 36 1 8.1874 0.8275 -1.6025 37 1 8.5413 0.7555 0.1404 38 1 7.1860 -1.3128 0.3292 39 1 6.8324 -1.2401 -1.4138 40 1 9.2560 -1.4096 -1.9116 41 1 9.6089 -1.4822 -0.1685 42 1 11.6215 -4.2148 -1.5981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:45 Heat of formation + Delta-G solvation = -24.849796 kcal Electronic energy + Delta-G solvation = -25915.598354 eV Core-core repulsion = 22088.634811 eV Total energy + Delta-G solvation = -3826.963542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.90750 -41.35708 -39.61441 -38.60086 -37.60523 -36.08787 -34.66993 -33.09771 -32.69585 -31.08509 -30.23819 -28.37957 -25.77987 -25.47287 -24.62355 -23.58198 -22.85211 -22.29447 -21.53801 -19.53692 -19.24543 -18.76660 -18.55812 -18.24156 -17.67198 -16.90381 -16.87364 -16.51349 -16.20224 -16.16529 -15.54957 -15.11643 -14.89300 -14.37804 -14.34866 -14.19066 -14.10292 -13.73142 -13.70463 -13.50423 -13.03608 -12.93507 -12.66553 -12.61951 -12.51136 -12.39638 -11.80593 -11.72731 -11.60087 -11.51166 -11.31741 -11.22728 -10.58348 -10.58207 -10.49724 -9.50211 -8.70658 -8.23044 -6.33655 -0.67771 0.15228 1.26899 1.38397 1.38712 1.43496 1.52105 1.72674 1.99293 2.39530 2.43513 2.57593 3.05852 3.10320 3.43758 3.66906 3.99166 4.00163 4.01563 4.10453 4.11142 4.16665 4.23374 4.34343 4.36723 4.48751 4.73143 4.85029 4.90813 4.92762 5.00176 5.05329 5.12758 5.35318 5.43311 5.45254 5.63006 5.65204 5.79569 5.85139 6.08042 6.20898 6.22331 6.68374 6.81148 6.95338 7.05094 7.35250 8.88905 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010868 B = 0.003393 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.689202 B = 8249.539235 C =10781.512642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.342 6.342 4 C 0.542 3.458 5 O -0.562 6.562 6 C -0.288 4.288 7 C 0.127 3.873 8 N -0.548 5.548 9 C 0.277 3.723 10 N -0.541 5.541 11 H 0.448 0.552 12 C 0.440 3.560 13 N -0.596 5.596 14 C 0.504 3.496 15 N -0.667 5.667 16 C 0.125 3.875 17 C -0.107 4.107 18 C 0.033 3.967 19 C -0.547 4.547 20 H 0.054 0.946 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.964 3.036 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.275 1.275 27 C -0.274 4.274 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.193 0.807 34 H 0.292 0.708 35 H 0.424 0.576 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 20.809 2.936 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.257 6.257 4 C 0.395 3.605 5 O -0.457 6.457 6 C -0.297 4.297 7 C -0.028 4.028 8 N -0.268 5.268 9 C 0.039 3.961 10 N -0.154 5.154 11 H 0.291 0.709 12 C 0.155 3.845 13 N -0.325 5.325 14 C 0.258 3.742 15 N -0.304 5.304 16 C 0.002 3.998 17 C -0.145 4.145 18 C -0.005 4.005 19 C -0.585 4.585 20 H 0.073 0.927 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.788 3.212 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.288 4.288 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.210 0.790 34 H 0.307 0.693 35 H 0.281 0.719 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.238 20.655 2.851 24.177 hybrid contribution -0.599 -1.792 0.018 1.889 sum -12.836 18.863 2.869 22.996 Atomic orbital electron populations 1.21805 0.89759 1.04354 1.03937 1.22925 0.97522 0.79860 1.02132 1.86164 1.22350 1.33119 1.84103 1.20316 0.80561 0.88783 0.70850 1.90122 1.59563 1.43917 1.52095 1.20012 0.91889 0.91005 1.26812 1.23190 0.98960 0.85792 0.94878 1.68883 0.97355 1.34136 1.26379 1.18660 0.88421 0.87187 1.01859 1.42051 1.02530 1.13578 1.57278 0.70898 1.26215 0.91254 0.86540 0.80522 1.68122 1.25849 1.07651 1.30909 1.18688 0.88500 0.85753 0.81295 1.46588 1.15521 1.03387 1.64913 1.21581 0.84933 0.91564 1.01733 1.21617 0.99475 0.92692 1.00734 1.18870 0.91953 0.94096 0.95547 1.21659 0.95165 0.93071 1.48608 0.92738 1.25916 0.94817 1.04109 0.94622 1.70082 1.00933 1.36614 1.49175 0.85420 0.78508 0.79248 0.78008 1.19091 1.20102 1.20096 1.19745 0.92233 0.94717 1.22094 0.91037 0.88406 0.90854 0.92191 0.91930 0.78991 0.69286 0.71920 0.90847 0.90457 0.93085 0.93210 0.98018 0.97914 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 1.15 6.10 71.98 0.44 1.59 16 3 O -0.34 -9.49 9.99 -58.35 -0.58 -10.08 16 4 C 0.54 18.07 7.90 69.88 0.55 18.62 16 5 O -0.56 -21.35 12.83 19.31 0.25 -21.11 16 6 C -0.29 -9.26 6.38 -18.65 -0.12 -9.38 16 7 C 0.13 3.51 11.74 84.98 1.00 4.51 16 8 N -0.55 -14.81 11.04 -191.14 -2.11 -16.92 16 9 C 0.28 6.75 8.48 133.94 1.14 7.89 16 10 N -0.54 -6.15 5.35 -196.25 -1.05 -7.20 16 11 H 0.45 1.09 8.93 -92.70 -0.83 0.26 16 12 C 0.44 4.22 12.29 180.42 2.22 6.44 16 13 N -0.60 -13.38 9.62 -196.66 -1.89 -15.28 16 14 C 0.50 15.48 7.50 133.42 1.00 16.48 16 15 N -0.67 -23.72 5.64 -344.76 -1.94 -25.66 16 16 C 0.13 4.60 5.70 86.38 0.49 5.09 16 17 C -0.11 -4.70 5.27 30.60 0.16 -4.54 16 18 C 0.03 1.75 4.97 29.85 0.15 1.90 16 19 C -0.55 -31.85 9.11 25.60 0.23 -31.61 16 20 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 21 C 0.00 0.21 5.46 84.65 0.46 0.67 16 22 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 23 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 C -0.27 -8.48 6.33 -19.92 -0.13 -8.61 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 32 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 33 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.29 -1.57 8.06 -2.91 -0.02 -1.59 16 35 H 0.42 16.41 3.86 -138.07 -0.53 15.87 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -83.42 360.60 3.02 -80.40 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.29 Total: 17.20 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 8.33 Total: 7.66 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -6.71 Total: -120.93 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.34 Total: -31.18 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -83.42 3.02 -80.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.546 kcal (2) G-P(sol) polarization free energy of solvation -83.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds