Wall clock time and date at job start Tue Mar 31 2020 13:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46922 * 2 1 4 4 N 1.46501 * 109.47230 * 240.00423 * 2 1 3 5 5 C 1.38822 * 119.99981 * 84.99474 * 4 2 1 6 6 C 1.39794 * 119.58827 * 0.02562 * 5 4 2 7 7 C 1.38595 * 119.49187 * 179.97438 * 6 5 4 8 8 C 1.38382 * 118.67909 * 359.97438 * 7 6 5 9 9 C 1.40555 * 119.15495 * 359.97438 * 8 7 6 10 10 C 1.41312 * 119.78654 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99836 * 359.97438 * 10 9 8 12 12 C 1.40030 * 119.99812 * 180.02562 * 10 9 8 13 13 N 1.30741 * 120.00024 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99798 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47096 * 59.99387 * 14 12 10 16 16 H 1.48505 * 109.46745 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46973 * 299.99480 * 14 12 10 18 18 N 1.31955 * 119.57837 * 180.02562 * 5 4 2 19 19 C 1.50693 * 109.47129 * 119.99866 * 2 1 3 20 20 C 1.39382 * 119.50423 * 79.72855 * 19 2 1 21 21 C 1.36092 * 120.98998 * 179.72760 * 20 19 2 22 22 C 1.40542 * 119.65133 * 0.55804 * 21 20 19 23 23 C 1.40535 * 121.28327 * 179.72052 * 22 21 20 24 24 C 1.36093 * 119.65753 * 180.02562 * 23 22 21 25 25 C 1.39377 * 120.98556 * 359.95850 * 24 23 22 26 26 C 1.36090 * 120.98975 * 0.02562 * 25 24 23 27 27 C 1.40538 * 119.65634 * 359.97438 * 26 25 24 28 28 C 1.36094 * 119.50846 * 259.99765 * 19 2 1 29 29 H 1.09006 * 109.47200 * 299.99683 * 1 2 3 30 30 H 1.09003 * 109.47247 * 59.99704 * 1 2 3 31 31 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99173 * 264.99928 * 4 2 1 33 33 H 1.08001 * 120.25405 * 0.24578 * 6 5 4 34 34 H 1.08005 * 120.65686 * 180.02562 * 7 6 5 35 35 H 1.08006 * 120.42240 * 179.97438 * 8 7 6 36 36 H 0.96996 * 120.00058 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.50639 * 359.97438 * 20 19 2 38 38 H 1.07999 * 120.17826 * 180.23869 * 21 20 19 39 39 H 1.08006 * 120.17361 * 0.03235 * 23 22 21 40 40 H 1.08005 * 119.50645 * 179.97438 * 24 23 22 41 41 H 1.07995 * 119.50413 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.17424 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.17048 * 359.95972 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1509 0.0021 -2.3920 6 6 1.8163 1.3584 -2.4448 7 6 1.9499 2.0480 -3.6396 8 6 2.4143 1.3671 -4.7511 9 6 2.7352 0.0036 -4.6343 10 6 3.2112 -0.7046 -5.7607 11 1 3.3269 -0.1982 -6.7075 12 6 3.5317 -2.0632 -5.6494 13 7 3.3911 -2.6762 -4.5032 14 14 4.1615 -2.9992 -7.1382 15 1 5.4179 -2.3725 -7.6217 16 1 4.4265 -4.4105 -6.7597 17 1 3.1412 -2.9585 -8.2164 18 7 2.5911 -0.6282 -3.4645 19 6 2.0323 -0.7103 1.2304 20 6 2.0572 -2.1037 1.2566 21 6 2.5099 -2.7761 2.3498 22 6 2.9488 -2.0579 3.4753 23 6 3.4174 -2.7172 4.6245 24 6 3.8340 -1.9889 5.6960 25 6 3.8041 -0.5956 5.6719 26 6 3.3571 0.0768 4.5765 27 6 2.9188 -0.6412 3.4507 28 6 2.4497 0.0181 2.3015 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 1.4607 1.8660 -1.5604 34 1 1.6972 3.0963 -3.7016 35 1 2.5288 1.8768 -5.6964 36 1 3.6134 -3.6172 -4.4260 37 1 1.7158 -2.6581 0.3949 38 1 2.5270 -3.8559 2.3544 39 1 3.4470 -3.7964 4.6571 40 1 4.1933 -2.4981 6.5781 41 1 4.1408 -0.0415 6.5355 42 1 3.3400 1.1567 4.5720 43 1 2.4213 1.0972 2.2684 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164144036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:13 Heat of formation + Delta-G solvation = 65.939254 kcal Electronic energy + Delta-G solvation = -24867.908179 eV Core-core repulsion = 21455.730809 eV Total energy + Delta-G solvation = -3412.177371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42702 -40.18537 -38.50208 -36.37258 -35.17508 -33.75917 -32.76605 -32.00069 -30.61790 -30.06864 -29.33629 -27.30475 -24.99352 -24.31939 -23.39815 -22.94888 -22.69943 -21.50269 -19.26864 -18.38566 -18.19282 -17.78015 -16.93603 -16.58703 -16.30261 -15.99266 -15.64368 -15.40627 -15.10296 -14.89350 -14.59447 -14.46624 -14.26618 -14.19707 -13.92796 -13.68392 -13.59069 -13.05606 -12.93178 -12.83405 -12.71915 -12.59310 -12.29761 -12.10991 -12.03493 -11.82161 -11.72374 -11.61758 -11.29516 -10.89469 -10.66839 -9.83298 -9.48938 -9.41607 -8.79935 -8.29424 -8.21715 -6.46751 -0.38090 0.05332 1.07948 1.13169 1.36552 1.40901 1.52815 1.59589 2.03720 2.25127 2.66636 2.93612 3.19405 3.56374 3.72544 3.95145 4.05845 4.06737 4.10054 4.30443 4.33131 4.37941 4.42666 4.45273 4.51046 4.60038 4.68365 4.82464 4.89143 4.93510 5.00461 5.02072 5.02264 5.13527 5.16216 5.28340 5.31386 5.34178 5.38691 5.56178 5.64256 5.67582 5.73900 5.91372 5.98351 6.09160 6.11547 6.23283 6.57407 6.84055 6.94552 7.22968 8.35796 8.52213 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.003008 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.026938 B = 9307.300855 C =10401.265991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.200 3.800 3 H 0.084 0.916 4 N -0.727 5.727 5 C 0.398 3.602 6 C -0.365 4.365 7 C -0.030 4.030 8 C -0.346 4.346 9 C 0.259 3.741 10 C -0.473 4.473 11 H 0.086 0.914 12 C 0.026 3.974 13 N -0.751 5.751 14 Si 0.985 3.015 15 H -0.260 1.260 16 H -0.269 1.269 17 H -0.260 1.260 18 N -0.567 5.567 19 C -0.088 4.088 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.073 4.073 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.068 4.068 28 C -0.102 4.102 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.390 0.610 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.275 0.725 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.105 0.160 19.971 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.095 3.905 3 H 0.102 0.898 4 N -0.362 5.362 5 C 0.158 3.842 6 C -0.390 4.390 7 C -0.054 4.054 8 C -0.369 4.369 9 C 0.132 3.868 10 C -0.505 4.505 11 H 0.104 0.896 12 C -0.196 4.196 13 N -0.373 5.373 14 Si 0.806 3.194 15 H -0.185 1.185 16 H -0.193 1.193 17 H -0.184 1.184 18 N -0.289 5.289 19 C -0.088 4.088 20 C -0.137 4.137 21 C -0.125 4.125 22 C -0.073 4.073 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.068 4.068 28 C -0.120 4.120 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.225 0.775 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.948 -0.746 20.241 20.277 hybrid contribution 0.035 0.099 -1.087 1.092 sum -0.913 -0.646 19.154 19.187 Atomic orbital electron populations 1.22190 0.94390 1.02198 1.02372 1.19732 0.94089 0.95668 0.81046 0.89834 1.44465 1.73578 1.12066 1.06086 1.18928 0.89343 0.88669 0.87273 1.20967 1.23848 0.94624 0.99590 1.21013 0.93660 0.98620 0.92126 1.21684 1.19050 0.96667 0.99456 1.18668 0.88092 0.89506 0.90526 1.19902 1.38939 0.95419 0.96198 0.89616 1.26951 0.94136 0.98611 0.99886 1.70245 1.30603 1.10425 1.26069 0.85232 0.79421 0.77057 0.77736 1.18476 1.19317 1.18395 1.68178 1.24951 1.37308 0.98486 1.19665 0.99755 0.94101 0.95301 1.20747 1.00291 0.93984 0.98724 1.21222 0.98274 1.00645 0.92366 1.18407 1.00271 0.93067 0.95524 1.21310 0.98820 1.00933 0.92450 1.21235 0.99033 0.94436 0.99085 1.21231 0.98859 0.94820 0.98815 1.21306 0.98868 1.00811 0.92462 1.18326 1.00111 0.93082 0.95259 1.21044 0.98349 1.00517 0.92138 0.89806 0.93043 0.92917 0.77450 0.86165 0.85285 0.88064 0.91429 0.86562 0.83780 0.83886 0.83367 0.83336 0.83826 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.38 71.98 0.68 -3.66 16 2 C 0.20 6.33 2.43 44.24 0.11 6.44 16 3 H 0.08 2.63 6.24 -2.38 -0.01 2.62 16 4 N -0.73 -29.88 5.18 -328.02 -1.70 -31.58 16 5 C 0.40 19.84 7.63 133.42 1.02 20.85 16 6 C -0.36 -16.55 8.84 22.73 0.20 -16.34 16 7 C -0.03 -1.38 10.15 22.39 0.23 -1.15 16 8 C -0.35 -18.02 9.83 22.87 0.22 -17.79 16 9 C 0.26 15.11 6.55 40.18 0.26 15.38 16 10 C -0.47 -26.81 9.14 23.46 0.21 -26.59 16 11 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 12 C 0.03 1.37 5.50 85.29 0.47 1.83 16 13 N -0.75 -41.53 11.46 21.84 0.25 -41.28 16 14 Si 0.99 39.46 29.56 68.60 2.03 41.48 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 N -0.57 -32.66 7.89 -186.59 -1.47 -34.13 16 19 C -0.09 -2.50 4.92 -20.09 -0.10 -2.60 16 20 C -0.12 -3.36 8.94 22.05 0.20 -3.17 16 21 C -0.11 -2.65 9.77 22.33 0.22 -2.43 16 22 C -0.07 -1.74 5.74 -21.30 -0.12 -1.86 16 23 C -0.12 -2.20 9.77 22.33 0.22 -1.98 16 24 C -0.12 -1.86 9.95 22.04 0.22 -1.64 16 25 C -0.12 -1.85 9.95 22.04 0.22 -1.63 16 26 C -0.12 -2.20 9.77 22.33 0.22 -1.98 16 27 C -0.07 -1.63 5.74 -21.30 -0.12 -1.75 16 28 C -0.10 -2.57 9.36 22.33 0.21 -2.36 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.05 1.62 7.65 -2.39 -0.02 1.60 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.39 16.55 6.96 -92.71 -0.65 15.91 16 33 H 0.12 4.65 6.05 -2.91 -0.02 4.63 16 34 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.28 13.80 8.29 -92.71 -0.77 13.03 16 37 H 0.12 3.40 6.88 -2.91 -0.02 3.38 16 38 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.14 2.98 8.00 -2.91 -0.02 2.95 16 Total: -1.00 -68.81 359.37 4.05 -64.76 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: 0.39 Total: 43.19 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 4.56 Total: -42.44 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -2.92 Total: -106.99 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Total: -68.81 4.05 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164144036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.698 kcal (2) G-P(sol) polarization free energy of solvation -68.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds