Wall clock time and date at job start Tue Mar 31 2020 13:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47227 * 2 1 4 4 N 1.46499 * 109.47022 * 119.99828 * 2 1 3 5 5 C 1.38825 * 120.00169 * 274.99894 * 4 2 1 6 6 C 1.39792 * 119.58302 * 359.73072 * 5 4 2 7 7 C 1.38600 * 119.49052 * 179.78836 * 6 5 4 8 8 C 1.38383 * 118.67817 * 0.47358 * 7 6 5 9 9 C 1.40558 * 119.15328 * 359.75132 * 8 7 6 10 10 C 1.41311 * 119.78671 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00269 * 0.02562 * 10 9 8 12 12 C 1.40029 * 119.99949 * 180.02562 * 10 9 8 13 13 N 1.30744 * 120.00025 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99910 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47104 * 59.99712 * 14 12 10 16 16 H 1.48493 * 109.46899 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46624 * 299.99912 * 14 12 10 18 18 N 1.31952 * 119.58530 * 179.97438 * 5 4 2 19 19 C 1.50705 * 109.47563 * 239.99868 * 2 1 3 20 20 C 1.39369 * 119.50613 * 280.00100 * 19 2 1 21 21 C 1.36096 * 120.99241 * 180.02562 * 20 19 2 22 22 C 1.40542 * 119.65256 * 359.97438 * 21 20 19 23 23 C 1.40532 * 121.29598 * 180.02562 * 22 21 20 24 24 C 1.36087 * 119.65988 * 179.97438 * 23 22 21 25 25 C 1.39377 * 120.99192 * 0.02562 * 24 23 22 26 26 C 1.36099 * 120.98274 * 0.02562 * 25 24 23 27 27 C 1.40534 * 119.65486 * 359.95464 * 26 25 24 28 28 C 1.36094 * 119.50384 * 99.72617 * 19 2 1 29 29 H 1.08996 * 109.47285 * 60.00306 * 1 2 3 30 30 H 1.09007 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47222 * 299.99739 * 1 2 3 32 32 H 0.97004 * 120.00243 * 95.28389 * 4 2 1 33 33 H 1.08004 * 120.25660 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.65757 * 180.22626 * 7 6 5 35 35 H 1.08000 * 120.42381 * 179.76846 * 8 7 6 36 36 H 0.96993 * 119.99822 * 179.97438 * 13 12 10 37 37 H 1.08007 * 119.50940 * 359.97438 * 20 19 2 38 38 H 1.07991 * 120.17619 * 179.97438 * 21 20 19 39 39 H 1.08005 * 120.17058 * 359.95799 * 23 22 21 40 40 H 1.07996 * 119.50989 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.51038 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.17174 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.16960 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1509 0.0020 2.3920 6 6 1.8213 1.3595 2.4435 7 6 1.9502 2.0480 3.6395 8 6 2.4141 1.3669 4.7512 9 6 2.7336 0.0031 4.6347 10 6 3.2090 -0.7053 5.7612 11 1 3.3254 -0.1989 6.7080 12 6 3.5291 -2.0640 5.6500 13 7 3.3877 -2.6772 4.5040 14 14 4.1568 -3.0006 7.1394 15 1 3.1353 -2.9596 8.2165 16 1 4.4216 -4.4119 6.7610 17 1 5.4130 -2.3745 7.6244 18 7 2.5910 -0.6283 3.4645 19 6 2.0324 -0.7104 -1.2305 20 6 2.0627 -2.1036 -1.2544 21 6 2.5110 -2.7761 -2.3494 22 6 2.9502 -2.0579 -3.4748 23 6 3.4194 -2.7170 -4.6239 24 6 3.8363 -1.9885 -5.6951 25 6 3.8060 -0.5953 -5.6712 26 6 3.3591 0.0770 -4.5755 27 6 2.9201 -0.6412 -3.4502 28 6 2.4445 0.0180 -2.3036 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2529 -1.6308 1.1517 33 1 1.4661 1.8673 1.5589 34 1 1.6975 3.0962 3.7015 35 1 2.5290 1.8767 5.6964 36 1 3.6098 -3.6182 4.4269 37 1 1.7261 -2.6580 -0.3908 38 1 2.5291 -3.8558 -2.3536 39 1 3.4492 -3.7962 -4.6566 40 1 4.1960 -2.4975 -6.5771 41 1 4.1430 -0.0409 -6.5346 42 1 3.3417 1.1569 -4.5710 43 1 2.4108 1.0970 -2.2725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164144037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:19 Heat of formation + Delta-G solvation = 79.824120 kcal Electronic energy + Delta-G solvation = -24867.573974 eV Core-core repulsion = 21455.998696 eV Total energy + Delta-G solvation = -3411.575278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.49769 -38.49927 -37.26384 -35.04262 -33.38615 -32.78198 -31.27846 -30.23697 -29.66082 -28.75928 -27.90737 -25.40286 -23.89418 -23.37381 -22.01876 -21.67426 -21.22803 -19.99426 -17.50134 -17.27225 -16.91122 -16.72005 -15.56317 -15.10253 -14.85629 -14.68428 -14.38330 -14.01662 -13.82014 -13.55610 -13.42803 -13.31640 -13.08750 -12.95374 -12.67166 -12.22343 -12.00114 -11.85199 -11.78862 -11.28867 -11.21481 -11.05179 -10.98958 -10.90877 -10.70385 -10.51866 -10.36260 -10.00929 -9.90402 -9.49525 -8.89950 -8.55203 -7.92818 -7.89070 -7.48770 -6.50514 -6.30833 -4.45427 0.49026 0.96145 2.01659 2.90303 2.93539 3.11339 3.14090 3.26174 3.32223 3.99695 4.03902 4.22133 4.52654 4.70715 4.76215 4.85608 4.87874 5.02589 5.12743 5.28370 5.32262 5.37130 5.56894 5.61908 5.70232 5.86070 5.90382 6.03855 6.08947 6.10881 6.18051 6.19375 6.21173 6.36254 6.45628 6.54506 6.55468 6.70309 6.77708 6.87003 6.92028 6.95097 6.99433 7.27038 7.61745 7.83168 7.94211 8.17888 8.38241 8.69306 8.82191 9.13938 10.26615 10.42323 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003008 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.701582 B = 9307.114006 C =10401.216355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.199 3.801 3 H 0.085 0.915 4 N -0.732 5.732 5 C 0.414 3.586 6 C -0.368 4.368 7 C -0.032 4.032 8 C -0.317 4.317 9 C 0.293 3.707 10 C -0.435 4.435 11 H 0.082 0.918 12 C 0.072 3.928 13 N -0.716 5.716 14 Si 0.905 3.095 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.266 1.266 18 N -0.532 5.532 19 C -0.071 4.071 20 C -0.099 4.099 21 C -0.107 4.107 22 C -0.054 4.054 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.105 4.105 27 C -0.048 4.048 28 C -0.103 4.103 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.395 0.605 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.270 0.730 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -0.086 -17.678 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.092 3.908 3 H 0.103 0.897 4 N -0.369 5.369 5 C 0.174 3.826 6 C -0.394 4.394 7 C -0.056 4.056 8 C -0.340 4.340 9 C 0.166 3.834 10 C -0.467 4.467 11 H 0.100 0.900 12 C -0.153 4.153 13 N -0.337 5.337 14 Si 0.729 3.271 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.190 1.190 18 N -0.253 5.253 19 C -0.072 4.072 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.054 4.054 23 C -0.123 4.123 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.123 4.123 27 C -0.048 4.048 28 C -0.121 4.121 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.350 -1.013 -17.898 17.978 hybrid contribution 0.174 0.120 0.656 0.689 sum -1.176 -0.893 -17.242 17.305 Atomic orbital electron populations 1.22277 0.95526 1.02250 1.01942 1.19580 0.93306 0.96019 0.81925 0.89749 1.44267 1.74225 1.12294 1.06070 1.18489 0.89769 0.87563 0.86760 1.20622 1.25227 0.95046 0.98496 1.20594 0.95202 0.96928 0.92907 1.21527 1.17375 0.97040 0.98103 1.18184 0.87280 0.88083 0.89846 1.19542 1.37224 0.93997 0.95902 0.89976 1.26042 0.94449 0.98240 0.96614 1.70140 1.29822 1.09900 1.23867 0.86445 0.80094 0.78490 0.82060 1.19028 1.20370 1.19034 1.68202 1.23394 1.36089 0.97612 1.19832 0.97856 0.93930 0.95533 1.20763 0.98738 0.93893 0.98300 1.20996 0.99138 0.99671 0.92715 1.18111 0.99841 0.92700 0.94791 1.21025 0.98748 0.99706 0.92793 1.20804 1.00563 0.94177 0.98603 1.20811 1.00366 0.94459 0.98391 1.21032 0.98777 0.99704 0.92737 1.18055 0.99510 0.92647 0.94624 1.20845 0.99145 0.99728 0.92388 0.92565 0.92557 0.91369 0.76932 0.89083 0.88995 0.88777 0.91933 0.85530 0.85522 0.85753 0.86256 0.86216 0.85656 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.38 37.16 0.35 -1.97 16 2 C 0.20 3.14 2.43 -69.08 -0.17 2.98 16 3 H 0.08 1.36 6.24 -51.93 -0.32 1.04 16 4 N -0.73 -14.61 5.18 -55.03 -0.29 -14.89 16 5 C 0.41 10.05 7.63 -155.33 -1.18 8.87 16 6 C -0.37 -8.41 8.85 -38.87 -0.34 -8.75 16 7 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 8 C -0.32 -8.09 9.83 -38.65 -0.38 -8.47 16 9 C 0.29 8.21 6.55 -85.00 -0.56 7.65 16 10 C -0.43 -11.86 9.14 -37.74 -0.34 -12.20 16 11 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 12 C 0.07 1.85 5.50 -17.34 -0.10 1.75 16 13 N -0.72 -19.08 11.46 55.55 0.64 -18.44 16 14 Si 0.90 18.86 29.56 -169.99 -5.02 13.83 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 N -0.53 -14.72 7.89 -10.33 -0.08 -14.80 16 19 C -0.07 -1.01 4.92 -104.97 -0.52 -1.52 16 20 C -0.10 -1.36 8.94 -39.93 -0.36 -1.72 16 21 C -0.11 -1.33 9.77 -39.48 -0.39 -1.72 16 22 C -0.05 -0.68 5.74 -106.83 -0.61 -1.30 16 23 C -0.10 -1.10 9.77 -39.49 -0.39 -1.48 16 24 C -0.12 -1.16 9.95 -39.93 -0.40 -1.56 16 25 C -0.12 -1.16 9.95 -39.93 -0.40 -1.55 16 26 C -0.10 -1.11 9.77 -39.49 -0.39 -1.50 16 27 C -0.05 -0.61 5.74 -106.83 -0.61 -1.23 16 28 C -0.10 -1.33 9.36 -39.48 -0.37 -1.70 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 32 H 0.39 7.95 6.94 -40.82 -0.28 7.66 16 33 H 0.09 1.83 6.06 -52.48 -0.32 1.51 16 34 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 37 H 0.13 1.73 6.87 -52.48 -0.36 1.37 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 1.42 8.00 -52.49 -0.42 1.00 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -30.54 359.39 -12.34 -42.88 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.46 Total: 12.57 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -7.55 Total: -26.56 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.27 Total: -48.14 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.54 -12.34 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164144037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.704 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds