Wall clock time and date at job start Tue Mar 31 2020 13:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47227 * 2 1 4 4 N 1.46499 * 109.47022 * 119.99828 * 2 1 3 5 5 C 1.38825 * 120.00169 * 274.99894 * 4 2 1 6 6 C 1.39792 * 119.58302 * 359.73072 * 5 4 2 7 7 C 1.38600 * 119.49052 * 179.78836 * 6 5 4 8 8 C 1.38383 * 118.67817 * 0.47358 * 7 6 5 9 9 C 1.40558 * 119.15328 * 359.75132 * 8 7 6 10 10 C 1.41311 * 119.78671 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00269 * 0.02562 * 10 9 8 12 12 C 1.40029 * 119.99949 * 180.02562 * 10 9 8 13 13 N 1.30744 * 120.00025 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99910 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47104 * 59.99712 * 14 12 10 16 16 H 1.48493 * 109.46899 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46624 * 299.99912 * 14 12 10 18 18 N 1.31952 * 119.58530 * 179.97438 * 5 4 2 19 19 C 1.50705 * 109.47563 * 239.99868 * 2 1 3 20 20 C 1.39369 * 119.50613 * 280.00100 * 19 2 1 21 21 C 1.36096 * 120.99241 * 180.02562 * 20 19 2 22 22 C 1.40542 * 119.65256 * 359.97438 * 21 20 19 23 23 C 1.40532 * 121.29598 * 180.02562 * 22 21 20 24 24 C 1.36087 * 119.65988 * 179.97438 * 23 22 21 25 25 C 1.39377 * 120.99192 * 0.02562 * 24 23 22 26 26 C 1.36099 * 120.98274 * 0.02562 * 25 24 23 27 27 C 1.40534 * 119.65486 * 359.95464 * 26 25 24 28 28 C 1.36094 * 119.50384 * 99.72617 * 19 2 1 29 29 H 1.08996 * 109.47285 * 60.00306 * 1 2 3 30 30 H 1.09007 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47222 * 299.99739 * 1 2 3 32 32 H 0.97004 * 120.00243 * 95.28389 * 4 2 1 33 33 H 1.08004 * 120.25660 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.65757 * 180.22626 * 7 6 5 35 35 H 1.08000 * 120.42381 * 179.76846 * 8 7 6 36 36 H 0.96993 * 119.99822 * 179.97438 * 13 12 10 37 37 H 1.08007 * 119.50940 * 359.97438 * 20 19 2 38 38 H 1.07991 * 120.17619 * 179.97438 * 21 20 19 39 39 H 1.08005 * 120.17058 * 359.95799 * 23 22 21 40 40 H 1.07996 * 119.50989 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.51038 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.17174 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.16960 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1509 0.0020 2.3920 6 6 1.8213 1.3595 2.4435 7 6 1.9502 2.0480 3.6395 8 6 2.4141 1.3669 4.7512 9 6 2.7336 0.0031 4.6347 10 6 3.2090 -0.7053 5.7612 11 1 3.3254 -0.1989 6.7080 12 6 3.5291 -2.0640 5.6500 13 7 3.3877 -2.6772 4.5040 14 14 4.1568 -3.0006 7.1394 15 1 3.1353 -2.9596 8.2165 16 1 4.4216 -4.4119 6.7610 17 1 5.4130 -2.3745 7.6244 18 7 2.5910 -0.6283 3.4645 19 6 2.0324 -0.7104 -1.2305 20 6 2.0627 -2.1036 -1.2544 21 6 2.5110 -2.7761 -2.3494 22 6 2.9502 -2.0579 -3.4748 23 6 3.4194 -2.7170 -4.6239 24 6 3.8363 -1.9885 -5.6951 25 6 3.8060 -0.5953 -5.6712 26 6 3.3591 0.0770 -4.5755 27 6 2.9201 -0.6412 -3.4502 28 6 2.4445 0.0180 -2.3036 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2529 -1.6308 1.1517 33 1 1.4661 1.8673 1.5589 34 1 1.6975 3.0962 3.7015 35 1 2.5290 1.8767 5.6964 36 1 3.6098 -3.6182 4.4269 37 1 1.7261 -2.6580 -0.3908 38 1 2.5291 -3.8558 -2.3536 39 1 3.4492 -3.7962 -4.6566 40 1 4.1960 -2.4975 -6.5771 41 1 4.1430 -0.0409 -6.5346 42 1 3.3417 1.1569 -4.5710 43 1 2.4108 1.0970 -2.2725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164144037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:17 Heat of formation + Delta-G solvation = 66.024348 kcal Electronic energy + Delta-G solvation = -24868.172377 eV Core-core repulsion = 21455.998696 eV Total energy + Delta-G solvation = -3412.173681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.42766 -40.18580 -38.50276 -36.37237 -35.17484 -33.75984 -32.76601 -32.00087 -30.61914 -30.06922 -29.33624 -27.30491 -24.99448 -24.31925 -23.39852 -22.94946 -22.69904 -21.50254 -19.26856 -18.38637 -18.19295 -17.78105 -16.93502 -16.58872 -16.30195 -15.99116 -15.64437 -15.40988 -15.10400 -14.89099 -14.59708 -14.46391 -14.26259 -14.19761 -13.93130 -13.68511 -13.59023 -13.05524 -12.93301 -12.83431 -12.71933 -12.59316 -12.29883 -12.11060 -12.03328 -11.82193 -11.72392 -11.61689 -11.29554 -10.89489 -10.66858 -9.83318 -9.48935 -9.41586 -8.79908 -8.29432 -8.21732 -6.46762 -0.38141 0.05337 1.07920 1.13157 1.36537 1.40899 1.52828 1.59577 2.03725 2.25113 2.66543 2.93598 3.19400 3.56276 3.72509 3.95132 4.05831 4.06740 4.10099 4.30455 4.33174 4.37984 4.42671 4.45260 4.51038 4.60026 4.68355 4.82438 4.89165 4.93535 5.00437 5.02071 5.02252 5.13521 5.16219 5.28340 5.31374 5.34156 5.38689 5.56161 5.64241 5.67550 5.73890 5.91355 5.98328 6.09152 6.11540 6.23259 6.57406 6.84026 6.94543 7.22934 8.35805 8.52212 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003008 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.701582 B = 9307.114006 C =10401.216355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.200 3.800 3 H 0.084 0.916 4 N -0.727 5.727 5 C 0.399 3.601 6 C -0.365 4.365 7 C -0.030 4.030 8 C -0.346 4.346 9 C 0.259 3.741 10 C -0.473 4.473 11 H 0.086 0.914 12 C 0.026 3.974 13 N -0.751 5.751 14 Si 0.985 3.015 15 H -0.260 1.260 16 H -0.269 1.269 17 H -0.260 1.260 18 N -0.567 5.567 19 C -0.088 4.088 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.073 4.073 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.068 4.068 28 C -0.102 4.102 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.390 0.610 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.275 0.725 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 0.164 -19.971 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.095 3.905 3 H 0.102 0.898 4 N -0.362 5.362 5 C 0.158 3.842 6 C -0.390 4.390 7 C -0.054 4.054 8 C -0.369 4.369 9 C 0.132 3.868 10 C -0.505 4.505 11 H 0.104 0.896 12 C -0.196 4.196 13 N -0.373 5.373 14 Si 0.806 3.194 15 H -0.184 1.184 16 H -0.193 1.193 17 H -0.185 1.185 18 N -0.289 5.289 19 C -0.088 4.088 20 C -0.138 4.138 21 C -0.125 4.125 22 C -0.073 4.073 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.068 4.068 28 C -0.120 4.120 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.226 0.774 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.944 -0.743 -20.241 20.277 hybrid contribution 0.037 0.099 1.087 1.092 sum -0.906 -0.644 -19.154 19.186 Atomic orbital electron populations 1.22185 0.94386 1.02195 1.02367 1.19731 0.94095 0.95665 0.81043 0.89837 1.44468 1.73497 1.12157 1.06080 1.18926 0.89344 0.88655 0.87284 1.20969 1.23941 0.94584 0.99545 1.21013 0.93662 0.98630 0.92112 1.21684 1.19047 0.96653 0.99470 1.18666 0.88096 0.89506 0.90520 1.19902 1.38941 0.95409 0.96203 0.89615 1.26953 0.94133 0.98612 0.99888 1.70247 1.30597 1.10420 1.26081 0.85232 0.79423 0.77057 0.77734 1.18395 1.19317 1.18475 1.68171 1.24917 1.37359 0.98478 1.19665 0.99780 0.94100 0.95282 1.20746 1.00320 0.93989 0.98704 1.21221 0.98294 1.00643 0.92342 1.18407 1.00267 0.93066 0.95531 1.21307 0.98823 1.00935 0.92447 1.21231 0.99035 0.94436 0.99085 1.21235 0.98862 0.94820 0.98807 1.21307 0.98884 1.00810 0.92448 1.18327 1.00079 0.93084 0.95289 1.21042 0.98340 1.00518 0.92145 0.89800 0.92921 0.93054 0.77446 0.86165 0.85286 0.88063 0.91430 0.86566 0.83782 0.83887 0.83370 0.83333 0.83826 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.38 71.98 0.68 -3.66 16 2 C 0.20 6.33 2.43 44.25 0.11 6.44 16 3 H 0.08 2.63 6.24 -2.39 -0.01 2.61 16 4 N -0.73 -29.89 5.18 -328.03 -1.70 -31.59 16 5 C 0.40 19.84 7.63 133.42 1.02 20.86 16 6 C -0.36 -16.55 8.85 22.73 0.20 -16.35 16 7 C -0.03 -1.38 10.15 22.39 0.23 -1.15 16 8 C -0.35 -18.02 9.83 22.87 0.22 -17.79 16 9 C 0.26 15.12 6.55 40.18 0.26 15.38 16 10 C -0.47 -26.80 9.14 23.46 0.21 -26.59 16 11 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 12 C 0.03 1.37 5.50 85.29 0.47 1.83 16 13 N -0.75 -41.53 11.46 21.84 0.25 -41.28 16 14 Si 0.99 39.45 29.56 68.60 2.03 41.48 16 15 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 16 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 N -0.57 -32.66 7.89 -186.59 -1.47 -34.14 16 19 C -0.09 -2.50 4.92 -20.09 -0.10 -2.60 16 20 C -0.12 -3.37 8.94 22.04 0.20 -3.17 16 21 C -0.11 -2.65 9.77 22.33 0.22 -2.43 16 22 C -0.07 -1.74 5.74 -21.30 -0.12 -1.86 16 23 C -0.12 -2.20 9.77 22.33 0.22 -1.98 16 24 C -0.12 -1.86 9.95 22.04 0.22 -1.64 16 25 C -0.12 -1.85 9.95 22.05 0.22 -1.63 16 26 C -0.12 -2.20 9.77 22.33 0.22 -1.98 16 27 C -0.07 -1.63 5.74 -21.30 -0.12 -1.75 16 28 C -0.10 -2.56 9.36 22.33 0.21 -2.35 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.05 1.62 7.68 -2.39 -0.02 1.60 16 32 H 0.39 16.55 6.94 -92.71 -0.64 15.91 16 33 H 0.12 4.65 6.06 -2.91 -0.02 4.63 16 34 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.28 13.80 8.29 -92.71 -0.77 13.03 16 37 H 0.12 3.40 6.87 -2.91 -0.02 3.38 16 38 H 0.14 2.86 8.06 -2.92 -0.02 2.84 16 39 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.14 2.97 8.00 -2.91 -0.02 2.95 16 Total: -1.00 -68.81 359.39 4.05 -64.76 By element: Atomic # 1 Polarization: 42.81 SS G_CDS: 0.39 Total: 43.20 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 4.56 Total: -42.44 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -2.92 Total: -107.00 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -68.81 4.05 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164144037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.782 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds