Wall clock time and date at job start Tue Mar 31 2020 13:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47254 * 2 1 4 4 N 1.46505 * 109.46996 * 240.00291 * 2 1 3 5 5 C 1.32211 * 119.99913 * 126.75225 * 4 2 1 6 6 C 1.46914 * 120.83606 * 6.21026 * 5 4 2 7 7 C 1.34369 * 119.36944 * 179.72903 * 6 5 4 8 8 N 1.36425 * 121.22142 * 0.23206 * 7 6 5 9 9 H 0.97002 * 119.08940 * 179.97438 * 8 7 6 10 10 C 1.37770 * 121.82359 * 0.02562 * 8 7 6 11 11 C 1.40175 * 119.74432 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99575 * 157.20027 * 11 10 8 13 13 C 1.40351 * 120.00319 * 337.19530 * 11 10 8 14 14 N 1.30582 * 119.99593 * 342.86116 * 13 11 10 15 15 Si 1.86798 * 119.99951 * 162.85503 * 13 11 10 16 16 H 1.48492 * 109.47076 * 60.00373 * 15 13 11 17 17 H 1.48504 * 109.46689 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47159 * 300.00263 * 15 13 11 19 19 C 1.39066 * 120.50767 * 359.97438 * 10 8 7 20 20 C 1.50697 * 109.47084 * 120.00154 * 2 1 3 21 21 C 1.39380 * 119.50669 * 79.99893 * 20 2 1 22 22 C 1.36087 * 120.99263 * 180.02562 * 21 20 2 23 23 C 1.40540 * 119.65484 * 359.97326 * 22 21 20 24 24 C 1.40537 * 121.29701 * 180.02562 * 23 22 21 25 25 C 1.36092 * 119.66066 * 179.97438 * 24 23 22 26 26 C 1.39378 * 120.98659 * 359.97438 * 25 24 23 27 27 C 1.36089 * 120.98751 * 0.02562 * 26 25 24 28 28 C 1.40532 * 119.65725 * 359.95489 * 27 26 25 29 29 C 1.36086 * 119.50603 * 259.72772 * 20 2 1 30 30 H 1.08992 * 109.46981 * 299.99977 * 1 2 3 31 31 H 1.09009 * 109.47081 * 60.00043 * 1 2 3 32 32 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 33 33 H 1.08003 * 120.31047 * 0.02562 * 6 5 4 34 34 H 1.08005 * 119.39154 * 180.25286 * 7 6 5 35 35 H 0.97003 * 119.99357 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.62664 * 180.02562 * 19 10 8 37 37 H 1.08000 * 119.50046 * 359.97438 * 21 20 2 38 38 H 1.08000 * 120.17790 * 179.97438 * 22 21 20 39 39 H 1.08008 * 120.16881 * 359.96086 * 24 23 22 40 40 H 1.07996 * 119.50983 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.50307 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.17098 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.17149 * 359.97438 * 29 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8846 -0.0935 -1.9969 6 6 3.4728 1.2037 -1.6366 7 6 4.3545 1.7816 -2.4698 8 7 4.7098 1.1884 -3.6458 9 1 5.3489 1.6333 -4.2242 10 6 4.1852 -0.0245 -4.0352 11 6 4.5814 -0.5949 -5.2528 12 1 4.4878 -1.6599 -5.4060 13 6 5.0996 0.2179 -6.2729 14 7 4.9109 1.5096 -6.2378 15 14 6.0593 -0.5480 -7.6806 16 1 5.1946 -1.5179 -8.3993 17 1 6.4958 0.5169 -8.6192 18 1 7.2511 -1.2516 -7.1422 19 6 3.2664 -0.6878 -3.2291 20 6 2.0323 -0.7104 1.2304 21 6 2.0625 -2.1037 1.2544 22 6 2.5097 -2.7762 2.3498 23 6 2.9490 -2.0581 3.4752 24 6 3.4180 -2.7172 4.6243 25 6 3.8359 -1.9888 5.6952 26 6 3.8067 -0.5955 5.6708 27 6 3.3590 0.0768 4.5755 28 6 2.9197 -0.6413 3.4503 29 6 2.4548 0.0180 2.2994 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 3.2027 1.6858 -0.7087 34 1 4.7903 2.7332 -2.2033 35 1 5.2694 2.0713 -6.9426 36 1 2.8542 -1.6389 -3.5323 37 1 1.7252 -2.6579 0.3910 38 1 2.5271 -3.8560 2.3542 39 1 3.4466 -3.7964 4.6575 40 1 4.1963 -2.4978 6.5769 41 1 4.1444 -0.0412 6.5340 42 1 3.3417 1.1567 4.5710 43 1 2.4302 1.0972 2.2648 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164145008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:35 Heat of formation + Delta-G solvation = 72.897536 kcal Electronic energy + Delta-G solvation = -24692.176774 eV Core-core repulsion = 21280.301137 eV Total energy + Delta-G solvation = -3411.875637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.12534 -38.61137 -37.00970 -34.84510 -33.76818 -32.52838 -31.49436 -30.59510 -29.38558 -28.56889 -27.53724 -26.01721 -23.53388 -22.98897 -21.74866 -21.74403 -21.17140 -19.60300 -18.07947 -17.02078 -16.68173 -16.55069 -15.91651 -15.38919 -14.88695 -14.63169 -14.40514 -13.89876 -13.80281 -13.47002 -13.19917 -13.11177 -12.98672 -12.78363 -12.55367 -12.24152 -11.99560 -11.82721 -11.63728 -11.56658 -11.18594 -11.05933 -10.89559 -10.71256 -10.65982 -10.54448 -10.40524 -10.21324 -9.73031 -9.69663 -9.41126 -8.27243 -8.19223 -7.64200 -7.51025 -7.32694 -6.00847 -4.82045 0.78340 1.29128 2.31231 2.58388 2.71814 2.85582 2.88505 3.13895 3.28045 3.61859 4.24188 4.39559 4.58884 4.77774 4.96130 5.05698 5.21067 5.28879 5.32739 5.42027 5.53728 5.58563 5.66819 5.76638 5.84779 5.95318 6.00038 6.16039 6.20896 6.24842 6.36994 6.44439 6.51836 6.57760 6.59796 6.65879 6.70100 6.75890 6.77144 6.87322 6.96551 7.04475 7.15651 7.35695 7.37262 7.64624 7.73423 7.94697 8.22905 8.25962 8.77237 8.89401 9.66787 9.69910 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002646 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.743317 B =10577.563206 C =10734.947213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.114 3.886 3 H 0.042 0.958 4 N -0.662 5.662 5 C 0.288 3.712 6 C -0.302 4.302 7 C 0.126 3.874 8 N -0.602 5.602 9 H 0.413 0.587 10 C 0.331 3.669 11 C -0.466 4.466 12 H 0.103 0.897 13 C 0.077 3.923 14 N -0.813 5.813 15 Si 0.924 3.076 16 H -0.259 1.259 17 H -0.276 1.276 18 H -0.259 1.259 19 C -0.357 4.357 20 C -0.043 4.043 21 C -0.072 4.072 22 C -0.126 4.126 23 C -0.058 4.058 24 C -0.104 4.104 25 C -0.130 4.130 26 C -0.127 4.127 27 C -0.106 4.106 28 C -0.049 4.049 29 C -0.126 4.126 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.293 0.707 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 0.104 12.010 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.002 3.998 3 H 0.059 0.941 4 N -0.389 5.389 5 C 0.127 3.873 6 C -0.332 4.332 7 C -0.003 4.003 8 N -0.212 5.212 9 H 0.253 0.747 10 C 0.222 3.778 11 C -0.499 4.499 12 H 0.121 0.879 13 C -0.142 4.142 14 N -0.440 5.440 15 Si 0.747 3.253 16 H -0.183 1.183 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.386 4.386 20 C -0.043 4.043 21 C -0.091 4.091 22 C -0.144 4.144 23 C -0.058 4.058 24 C -0.122 4.122 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.124 4.124 28 C -0.049 4.049 29 C -0.145 4.145 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.350 -0.465 12.094 12.108 hybrid contribution 1.018 1.000 -0.569 1.536 sum 1.368 0.535 11.525 11.618 Atomic orbital electron populations 1.21695 0.95415 1.01422 0.99839 1.20306 0.94257 0.94914 0.90297 0.94053 1.73440 1.25775 1.31554 1.08177 1.20235 0.88236 0.87269 0.91589 1.22276 1.07197 1.01648 1.02075 1.21240 0.96090 0.96117 0.86888 1.42075 1.40658 1.20512 1.17993 0.74669 1.17627 0.86927 0.81041 0.92174 1.19496 1.37347 0.96918 0.96099 0.87898 1.26208 0.93334 0.94645 0.99985 1.69335 1.34865 1.05699 1.34136 0.86066 0.80346 0.79750 0.79099 1.18322 1.20097 1.18376 1.20215 1.13048 1.06821 0.98469 1.20137 0.95064 0.94145 0.94988 1.20896 0.96498 0.94277 0.97387 1.21018 1.00818 0.99343 0.93191 1.18086 1.00224 0.92706 0.94807 1.20992 0.98870 0.99458 0.92907 1.20725 1.01405 0.94144 0.98562 1.20732 1.01032 0.94439 0.98322 1.20989 0.99050 0.99437 0.92963 1.18056 0.99588 0.92662 0.94564 1.20873 1.01416 0.99323 0.92862 0.94044 0.93062 0.92721 0.86683 0.85237 0.89572 0.86875 0.84938 0.86080 0.86065 0.86576 0.86561 0.86066 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.49 37.16 0.35 -1.87 16 2 C 0.11 2.25 2.97 -69.08 -0.21 2.04 16 3 H 0.04 0.82 5.15 -51.93 -0.27 0.55 16 4 N -0.66 -15.34 9.41 -51.91 -0.49 -15.83 16 5 C 0.29 6.93 6.80 -82.74 -0.56 6.36 16 6 C -0.30 -6.40 9.34 -37.44 -0.35 -6.75 16 7 C 0.13 2.47 11.15 -16.87 -0.19 2.28 16 8 N -0.60 -12.98 4.89 -10.83 -0.05 -13.03 16 9 H 0.41 8.51 6.35 -40.82 -0.26 8.25 16 10 C 0.33 7.97 6.36 -84.16 -0.54 7.44 16 11 C -0.47 -10.88 9.03 -38.06 -0.34 -11.22 16 12 H 0.10 2.34 7.91 -52.49 -0.42 1.93 16 13 C 0.08 1.64 5.18 -17.29 -0.09 1.55 16 14 N -0.81 -17.50 11.13 55.57 0.62 -16.88 16 15 Si 0.92 16.18 29.60 -169.99 -5.03 11.15 16 16 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 17 H -0.28 -4.71 7.11 56.52 0.40 -4.31 16 18 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 19 C -0.36 -8.93 9.83 -37.82 -0.37 -9.30 16 20 C -0.04 -0.78 4.92 -104.97 -0.52 -1.30 16 21 C -0.07 -1.30 9.21 -39.93 -0.37 -1.67 16 22 C -0.13 -1.98 9.77 -39.49 -0.39 -2.37 16 23 C -0.06 -0.90 5.74 -106.83 -0.61 -1.51 16 24 C -0.10 -1.34 9.77 -39.49 -0.39 -1.73 16 25 C -0.13 -1.51 9.95 -39.93 -0.40 -1.91 16 26 C -0.13 -1.49 9.95 -39.93 -0.40 -1.88 16 27 C -0.11 -1.40 9.77 -39.49 -0.39 -1.79 16 28 C -0.05 -0.77 5.74 -106.83 -0.61 -1.38 16 29 C -0.13 -2.09 9.36 -39.49 -0.37 -2.46 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.12 2.24 6.01 -52.48 -0.32 1.92 16 34 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 35 H 0.29 5.70 8.29 -40.82 -0.34 5.37 16 36 H 0.11 2.89 8.06 -52.49 -0.42 2.47 16 37 H 0.13 2.49 7.68 -52.49 -0.40 2.09 16 38 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.12 1.75 7.99 -52.49 -0.42 1.34 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -26.69 360.86 -11.68 -38.38 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -5.44 Total: 18.24 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -6.73 Total: -27.46 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.08 Total: -45.75 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.03 Total: 11.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.69 -11.68 -38.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164145008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.273 kcal (2) G-P(sol) polarization free energy of solvation -26.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds