Wall clock time and date at job start Tue Mar 31 2020 13:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47254 * 2 1 4 4 N 1.46505 * 109.46996 * 240.00291 * 2 1 3 5 5 C 1.32211 * 119.99913 * 126.75225 * 4 2 1 6 6 C 1.46914 * 120.83606 * 6.21026 * 5 4 2 7 7 C 1.34369 * 119.36944 * 179.72903 * 6 5 4 8 8 N 1.36425 * 121.22142 * 0.23206 * 7 6 5 9 9 H 0.97002 * 119.08940 * 179.97438 * 8 7 6 10 10 C 1.37770 * 121.82359 * 0.02562 * 8 7 6 11 11 C 1.40175 * 119.74432 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99575 * 157.20027 * 11 10 8 13 13 C 1.40351 * 120.00319 * 337.19530 * 11 10 8 14 14 N 1.30582 * 119.99593 * 342.86116 * 13 11 10 15 15 Si 1.86798 * 119.99951 * 162.85503 * 13 11 10 16 16 H 1.48492 * 109.47076 * 60.00373 * 15 13 11 17 17 H 1.48504 * 109.46689 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47159 * 300.00263 * 15 13 11 19 19 C 1.39066 * 120.50767 * 359.97438 * 10 8 7 20 20 C 1.50697 * 109.47084 * 120.00154 * 2 1 3 21 21 C 1.39380 * 119.50669 * 79.99893 * 20 2 1 22 22 C 1.36087 * 120.99263 * 180.02562 * 21 20 2 23 23 C 1.40540 * 119.65484 * 359.97326 * 22 21 20 24 24 C 1.40537 * 121.29701 * 180.02562 * 23 22 21 25 25 C 1.36092 * 119.66066 * 179.97438 * 24 23 22 26 26 C 1.39378 * 120.98659 * 359.97438 * 25 24 23 27 27 C 1.36089 * 120.98751 * 0.02562 * 26 25 24 28 28 C 1.40532 * 119.65725 * 359.95489 * 27 26 25 29 29 C 1.36086 * 119.50603 * 259.72772 * 20 2 1 30 30 H 1.08992 * 109.46981 * 299.99977 * 1 2 3 31 31 H 1.09009 * 109.47081 * 60.00043 * 1 2 3 32 32 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 33 33 H 1.08003 * 120.31047 * 0.02562 * 6 5 4 34 34 H 1.08005 * 119.39154 * 180.25286 * 7 6 5 35 35 H 0.97003 * 119.99357 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.62664 * 180.02562 * 19 10 8 37 37 H 1.08000 * 119.50046 * 359.97438 * 21 20 2 38 38 H 1.08000 * 120.17790 * 179.97438 * 22 21 20 39 39 H 1.08008 * 120.16881 * 359.96086 * 24 23 22 40 40 H 1.07996 * 119.50983 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.50307 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.17098 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.17149 * 359.97438 * 29 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8846 -0.0935 -1.9969 6 6 3.4728 1.2037 -1.6366 7 6 4.3545 1.7816 -2.4698 8 7 4.7098 1.1884 -3.6458 9 1 5.3489 1.6333 -4.2242 10 6 4.1852 -0.0245 -4.0352 11 6 4.5814 -0.5949 -5.2528 12 1 4.4878 -1.6599 -5.4060 13 6 5.0996 0.2179 -6.2729 14 7 4.9109 1.5096 -6.2378 15 14 6.0593 -0.5480 -7.6806 16 1 5.1946 -1.5179 -8.3993 17 1 6.4958 0.5169 -8.6192 18 1 7.2511 -1.2516 -7.1422 19 6 3.2664 -0.6878 -3.2291 20 6 2.0323 -0.7104 1.2304 21 6 2.0625 -2.1037 1.2544 22 6 2.5097 -2.7762 2.3498 23 6 2.9490 -2.0581 3.4752 24 6 3.4180 -2.7172 4.6243 25 6 3.8359 -1.9888 5.6952 26 6 3.8067 -0.5955 5.6708 27 6 3.3590 0.0768 4.5755 28 6 2.9197 -0.6413 3.4503 29 6 2.4548 0.0180 2.2994 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 3.2027 1.6858 -0.7087 34 1 4.7903 2.7332 -2.2033 35 1 5.2694 2.0713 -6.9426 36 1 2.8542 -1.6389 -3.5323 37 1 1.7252 -2.6579 0.3910 38 1 2.5271 -3.8560 2.3542 39 1 3.4466 -3.7964 4.6575 40 1 4.1963 -2.4978 6.5769 41 1 4.1444 -0.0412 6.5340 42 1 3.3417 1.1567 4.5710 43 1 2.4302 1.0972 2.2648 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164145008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:34 Heat of formation + Delta-G solvation = 61.193349 kcal Electronic energy + Delta-G solvation = -24692.684305 eV Core-core repulsion = 21280.301137 eV Total energy + Delta-G solvation = -3412.383169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26483 -40.29610 -38.28812 -36.36486 -35.36679 -33.74792 -32.93755 -32.29189 -30.54332 -29.84581 -29.13273 -27.75593 -24.83664 -24.15691 -23.34261 -22.92656 -22.66250 -21.10927 -19.76997 -18.40240 -18.14117 -17.75279 -17.21051 -16.92300 -16.41109 -16.05925 -15.61340 -15.34815 -15.14932 -14.73225 -14.58884 -14.44124 -14.30645 -14.17275 -13.84454 -13.66707 -13.49171 -13.24897 -13.10959 -12.89189 -12.76338 -12.44684 -12.39588 -12.15224 -11.95489 -11.85971 -11.77040 -11.66442 -11.31736 -11.06264 -10.82903 -9.99748 -9.37568 -9.23487 -8.98777 -8.73537 -7.73838 -6.64584 -0.31849 0.15454 0.95826 1.07843 1.18843 1.41162 1.52201 1.62974 2.15109 2.15626 2.55893 2.91965 3.24144 3.48087 3.69026 3.94570 4.01035 4.07225 4.11708 4.16210 4.30670 4.37192 4.44757 4.55513 4.56270 4.62611 4.69504 4.77744 4.91272 4.95129 4.97049 5.04155 5.07184 5.10815 5.16716 5.28136 5.33529 5.40519 5.45023 5.61350 5.65244 5.73768 5.77028 5.90388 5.98918 6.00657 6.10594 6.18500 6.48270 6.50853 7.00953 7.19499 7.97769 8.03226 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002646 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.743317 B =10577.563206 C =10734.947213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.113 3.887 3 H 0.040 0.960 4 N -0.685 5.685 5 C 0.267 3.733 6 C -0.319 4.319 7 C 0.137 3.863 8 N -0.602 5.602 9 H 0.418 0.582 10 C 0.320 3.680 11 C -0.495 4.495 12 H 0.095 0.905 13 C 0.050 3.950 14 N -0.822 5.822 15 Si 0.994 3.006 16 H -0.264 1.264 17 H -0.260 1.260 18 H -0.257 1.257 19 C -0.400 4.400 20 C -0.067 4.067 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.078 4.078 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.068 4.068 29 C -0.126 4.126 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.132 0.868 34 H 0.182 0.818 35 H 0.306 0.694 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 1.427 14.048 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.058 0.942 4 N -0.411 5.411 5 C 0.104 3.896 6 C -0.349 4.349 7 C 0.008 3.992 8 N -0.214 5.214 9 H 0.259 0.741 10 C 0.211 3.789 11 C -0.527 4.527 12 H 0.113 0.887 13 C -0.168 4.168 14 N -0.449 5.449 15 Si 0.814 3.186 16 H -0.188 1.188 17 H -0.184 1.184 18 H -0.181 1.181 19 C -0.429 4.429 20 C -0.068 4.068 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.078 4.078 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.068 4.068 29 C -0.144 4.144 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.199 0.801 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.291 0.876 14.157 14.368 hybrid contribution 0.428 0.586 -1.047 1.274 sum 2.718 1.462 13.111 13.469 Atomic orbital electron populations 1.21629 0.94385 1.01104 1.00512 1.20362 0.95100 0.94632 0.89762 0.94194 1.73325 1.25471 1.32947 1.09386 1.20408 0.88958 0.88796 0.91419 1.22349 1.08268 1.00893 1.03380 1.21899 0.94781 0.97212 0.85332 1.42071 1.40676 1.19863 1.18789 0.74137 1.17731 0.86736 0.82052 0.92388 1.19697 1.38862 0.97104 0.97020 0.88712 1.26922 0.93240 0.94934 1.01710 1.69318 1.33999 1.06498 1.35083 0.85030 0.78597 0.79024 0.75944 1.18812 1.18395 1.18116 1.20147 1.15425 1.06906 1.00410 1.20000 0.97310 0.94346 0.95145 1.20768 0.99070 0.94450 0.97758 1.21240 0.99515 1.00398 0.92669 1.18385 1.00755 0.93036 0.95587 1.21282 0.98839 1.00841 0.92358 1.21206 0.99418 0.94370 0.99033 1.21210 0.98943 0.94842 0.98645 1.21257 0.99291 1.00595 0.92590 1.18340 1.00072 0.93169 0.95183 1.21034 1.00696 0.99953 0.92729 0.91500 0.94044 0.93540 0.85081 0.80091 0.88180 0.89630 0.87383 0.84097 0.83917 0.83125 0.83148 0.84142 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 9.49 71.98 0.68 -3.71 16 2 C 0.11 4.67 2.97 44.24 0.13 4.80 16 3 H 0.04 1.63 5.15 -2.39 -0.01 1.62 16 4 N -0.68 -34.06 9.41 -318.14 -2.99 -37.05 16 5 C 0.27 13.63 6.80 42.30 0.29 13.92 16 6 C -0.32 -13.79 9.34 23.66 0.22 -13.57 16 7 C 0.14 5.25 11.15 83.09 0.93 6.18 16 8 N -0.60 -26.18 4.89 -188.19 -0.92 -27.10 16 9 H 0.42 16.98 6.35 -92.71 -0.59 16.39 16 10 C 0.32 16.15 6.36 38.88 0.25 16.39 16 11 C -0.49 -24.00 9.03 23.26 0.21 -23.79 16 12 H 0.09 4.59 7.91 -2.91 -0.02 4.57 16 13 C 0.05 2.13 5.18 85.39 0.44 2.57 16 14 N -0.82 -34.64 11.13 21.89 0.24 -34.40 16 15 Si 0.99 32.40 29.60 68.60 2.03 34.43 16 16 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 17 H -0.26 -7.78 7.11 99.48 0.71 -7.08 16 18 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 19 C -0.40 -21.63 9.83 23.41 0.23 -21.40 16 20 C -0.07 -2.58 4.92 -20.09 -0.10 -2.68 16 21 C -0.10 -3.91 9.21 22.04 0.20 -3.71 16 22 C -0.12 -3.89 9.77 22.33 0.22 -3.67 16 23 C -0.08 -2.34 5.74 -21.30 -0.12 -2.46 16 24 C -0.12 -2.67 9.77 22.33 0.22 -2.46 16 25 C -0.12 -2.33 9.95 22.04 0.22 -2.11 16 26 C -0.12 -2.27 9.95 22.04 0.22 -2.06 16 27 C -0.12 -2.83 9.77 22.33 0.22 -2.61 16 28 C -0.07 -2.06 5.74 -21.29 -0.12 -2.18 16 29 C -0.13 -4.18 9.36 22.33 0.21 -3.97 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.13 5.11 6.01 -2.91 -0.02 5.10 16 34 H 0.18 4.96 8.06 -2.91 -0.02 4.93 16 35 H 0.31 11.35 8.29 -92.71 -0.77 10.59 16 36 H 0.09 4.89 8.06 -2.91 -0.02 4.86 16 37 H 0.11 4.52 7.68 -2.91 -0.02 4.50 16 38 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.13 3.85 7.99 -2.91 -0.02 3.83 16 Total: -1.00 -62.34 360.86 3.34 -58.99 By element: Atomic # 1 Polarization: 51.20 SS G_CDS: 0.44 Total: 51.64 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 4.54 Total: -46.51 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -3.67 Total: -98.55 kcal Atomic # 14 Polarization: 32.40 SS G_CDS: 2.03 Total: 34.43 kcal Total: -62.34 3.34 -58.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164145008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.185 kcal (2) G-P(sol) polarization free energy of solvation -62.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds