Wall clock time and date at job start Tue Mar 31 2020 14:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45207 * 109.46780 * 2 1 4 4 C 1.34837 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.21592 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.46814 * 119.99983 * 180.02562 * 4 3 2 7 7 C 1.36467 * 126.86239 * 6.37251 * 6 4 3 8 8 N 1.35706 * 109.63909 * 180.02562 * 7 6 4 9 9 H 0.96994 * 124.71475 * 179.97438 * 8 7 6 10 10 C 1.37096 * 110.56580 * 0.02562 * 8 7 6 11 11 N 1.33233 * 134.04146 * 180.02562 * 10 8 7 12 12 C 1.31547 * 120.72908 * 179.97438 * 11 10 8 13 13 N 1.32043 * 122.67167 * 0.03568 * 12 11 10 14 14 C 1.33038 * 120.94529 * 359.94406 * 13 12 11 15 15 N 1.38382 * 120.83029 * 180.02562 * 14 13 12 16 16 C 1.46904 * 110.99889 * 298.57604 * 15 14 13 17 17 C 1.52995 * 109.47335 * 290.11224 * 16 15 14 18 18 C 1.46897 * 111.00549 * 62.53082 * 15 14 13 19 19 C 1.50696 * 109.47283 * 163.61528 * 18 15 14 20 20 H 1.08002 * 120.00296 * 3.43655 * 19 18 15 21 21 C 1.37884 * 119.99968 * 183.42893 * 19 18 15 22 22 N 1.31514 * 119.99680 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47386 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46876 * 120.00301 * 23 21 19 26 26 H 1.48498 * 109.47006 * 239.99907 * 23 21 19 27 27 C 1.40031 * 118.34384 * 0.03613 * 14 13 12 28 28 H 1.09005 * 109.46551 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46607 * 299.99466 * 1 2 3 30 30 H 1.08998 * 109.47543 * 59.99546 * 1 2 3 31 31 H 1.09003 * 109.47044 * 240.00789 * 2 1 3 32 32 H 1.08998 * 109.47543 * 120.00453 * 2 1 3 33 33 H 1.08003 * 125.18009 * 0.02562 * 7 6 4 34 34 H 1.08004 * 118.66172 * 180.02562 * 12 11 10 35 35 H 1.09006 * 109.46748 * 50.11046 * 16 15 14 36 36 H 1.08996 * 109.47078 * 170.10425 * 16 15 14 37 37 H 1.08995 * 109.47685 * 55.83087 * 17 16 15 38 38 H 1.08999 * 109.47011 * 175.83085 * 17 16 15 39 39 H 1.09001 * 109.47018 * 295.82695 * 17 16 15 40 40 H 1.08991 * 109.47159 * 283.62399 * 18 15 14 41 41 H 1.09006 * 109.46428 * 43.62110 * 18 15 14 42 42 H 0.97001 * 119.99337 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3507 1.5458 0.0005 5 8 4.0914 0.5815 0.0005 6 6 3.9118 2.9025 0.0011 7 6 3.2218 4.0737 0.1224 8 7 4.0862 5.1189 0.0779 9 1 3.8288 6.0518 0.1440 10 6 5.3736 4.6731 -0.0747 11 7 6.5575 5.2766 -0.1709 12 6 7.6604 4.5741 -0.3150 13 7 7.6628 3.2550 -0.3727 14 6 6.5291 2.5643 -0.2851 15 7 6.5345 1.1818 -0.3453 16 6 7.0650 0.7130 -1.6325 17 6 6.0660 1.0382 -2.7448 18 6 7.2911 0.6088 0.7759 19 6 6.9512 -0.8526 0.9165 20 1 6.2869 -1.3233 0.2069 21 6 7.4886 -1.5890 1.9510 22 7 8.2974 -1.0157 2.8153 23 14 7.0679 -3.4007 2.1248 24 1 6.1448 -3.8015 1.0329 25 1 8.3118 -4.2078 2.0422 26 1 6.4134 -3.6331 3.4373 27 6 5.3302 3.2711 -0.1305 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.1510 4.1561 0.2365 34 1 8.6021 5.0977 -0.3892 35 1 8.0125 1.2113 -1.8381 36 1 7.2231 -0.3646 -1.5896 37 1 5.8515 2.1068 -2.7396 38 1 6.4912 0.7576 -3.7084 39 1 5.1436 0.4817 -2.5787 40 1 8.3589 0.7170 0.5866 41 1 7.0301 1.1326 1.6956 42 1 8.6751 -1.5337 3.5432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:01 Heat of formation + Delta-G solvation = 22.437340 kcal Electronic energy + Delta-G solvation = -27714.534943 eV Core-core repulsion = 23889.621925 eV Total energy + Delta-G solvation = -3824.913018 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87071 -39.55633 -38.81313 -36.79209 -35.80128 -32.87763 -32.26779 -31.65244 -31.05400 -30.09086 -29.16054 -26.46406 -24.32555 -23.73464 -23.14514 -22.32861 -22.26349 -20.67843 -19.59907 -18.77044 -17.03816 -16.53859 -16.21440 -16.13973 -15.87233 -15.53974 -15.43728 -14.72896 -14.65477 -14.10498 -13.92206 -13.66403 -13.41947 -13.07084 -12.86974 -12.75746 -12.65018 -12.25435 -12.04680 -11.66099 -11.39496 -11.29318 -10.97598 -10.74635 -10.73004 -10.50466 -10.35146 -10.23408 -10.11191 -9.77661 -9.71756 -9.24312 -9.04295 -8.90521 -8.34208 -8.03686 -7.39627 -5.90931 -3.89379 0.90573 1.47244 2.01503 2.54758 3.02836 3.38226 3.44835 3.51280 3.58013 4.16227 4.25923 4.44874 4.54994 4.64101 4.77743 5.06680 5.09173 5.09675 5.23332 5.38867 5.44796 5.47479 5.55512 5.79430 5.86907 5.88994 5.97614 5.99577 6.06532 6.19691 6.23644 6.41357 6.69660 6.76223 6.81690 6.92725 6.94259 7.30528 7.40448 7.49339 7.94546 8.12503 8.22051 8.49463 8.50632 8.64347 9.18470 9.71941 11.20489 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.009312 B = 0.006433 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.169463 B = 4351.355219 C = 6333.518656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.066 3.934 3 O -0.374 6.374 4 C 0.504 3.496 5 O -0.421 6.421 6 C -0.155 4.155 7 C 0.114 3.886 8 N -0.562 5.562 9 H 0.424 0.576 10 C 0.312 3.688 11 N -0.547 5.547 12 C 0.326 3.674 13 N -0.564 5.564 14 C 0.434 3.566 15 N -0.467 5.467 16 C 0.066 3.934 17 C -0.140 4.140 18 C 0.211 3.789 19 C -0.486 4.486 20 H 0.070 0.930 21 C 0.051 3.949 22 N -0.902 5.902 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.286 1.286 27 C -0.152 4.152 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.195 0.805 34 H 0.196 0.804 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.035 0.965 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.005 0.995 41 H 0.024 0.976 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.679 10.819 -7.673 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 O -0.293 6.293 4 C 0.344 3.656 5 O -0.301 6.301 6 C -0.165 4.165 7 C -0.017 4.017 8 N -0.169 5.169 9 H 0.263 0.737 10 C 0.073 3.927 11 N -0.269 5.269 12 C 0.035 3.965 13 N -0.284 5.284 14 C 0.192 3.808 15 N -0.191 5.191 16 C -0.061 4.061 17 C -0.198 4.198 18 C 0.088 3.912 19 C -0.525 4.525 20 H 0.088 0.912 21 C -0.149 4.149 22 N -0.543 5.543 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.213 1.213 26 H -0.213 1.213 27 C -0.163 4.163 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.212 0.788 34 H 0.212 0.788 35 H 0.054 0.946 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.042 0.958 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.021 10.858 -7.529 18.551 hybrid contribution -0.230 -0.654 0.454 0.829 sum -13.251 10.204 -7.075 18.160 Atomic orbital electron populations 1.21784 0.93342 1.02588 1.02942 1.22878 0.94398 0.80600 1.02912 1.86467 1.24841 1.31925 1.86095 1.19911 0.80293 0.89121 0.76321 1.91208 1.58600 1.40307 1.39981 1.18921 0.91222 0.90387 1.15993 1.22316 0.95819 0.85015 0.98520 1.41209 1.03415 1.09705 1.62526 0.73742 1.18310 0.86399 0.89037 0.98980 1.67388 0.96341 1.41766 1.21358 1.24490 0.94625 0.86881 0.90482 1.68956 1.31037 1.09475 1.18889 1.20216 0.85492 0.92380 0.82678 1.60408 1.55821 0.97825 1.05051 1.21986 0.94897 1.02033 0.87211 1.21755 1.00473 1.00188 0.97416 1.19699 0.90627 0.95060 0.85803 1.21140 1.26846 0.93096 1.11444 0.91234 1.24973 0.95497 0.98583 0.95841 1.69991 1.32438 1.36117 1.15742 0.86440 0.77969 0.85123 0.77873 1.19612 1.21281 1.21274 1.19849 0.93677 0.92990 1.09740 0.90607 0.91791 0.91887 0.91395 0.91112 0.78826 0.78763 0.94583 0.89000 0.94607 0.93145 0.92061 0.97747 0.95781 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 2 C 0.07 0.85 6.20 37.16 0.23 1.08 16 3 O -0.37 -5.40 10.06 -40.87 -0.41 -5.81 16 4 C 0.50 8.98 7.93 34.20 0.27 9.25 16 5 O -0.42 -9.24 14.31 -19.34 -0.28 -9.52 16 6 C -0.15 -2.53 6.27 -103.45 -0.65 -3.18 16 7 C 0.11 1.27 11.65 -16.48 -0.19 1.07 16 8 N -0.56 -6.25 5.95 -11.97 -0.07 -6.32 16 9 H 0.42 3.04 8.96 -40.82 -0.37 2.68 16 10 C 0.31 4.98 8.46 -155.66 -1.32 3.66 16 11 N -0.55 -8.87 10.47 -13.91 -0.15 -9.02 16 12 C 0.33 5.43 12.23 -92.15 -1.13 4.31 16 13 N -0.56 -11.41 9.74 -13.73 -0.13 -11.54 16 14 C 0.43 9.28 4.26 -154.74 -0.66 8.63 16 15 N -0.47 -10.89 1.93 -174.29 -0.34 -11.23 16 16 C 0.07 1.38 5.48 -3.82 -0.02 1.36 16 17 C -0.14 -2.48 10.00 37.15 0.37 -2.11 16 18 C 0.21 5.84 4.54 -4.98 -0.02 5.82 16 19 C -0.49 -14.13 8.47 -34.44 -0.29 -14.42 16 20 H 0.07 2.03 7.54 -52.49 -0.40 1.63 16 21 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 22 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 23 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 C -0.15 -2.87 6.30 -104.81 -0.66 -3.53 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.19 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.20 2.44 8.06 -52.48 -0.42 2.02 16 35 H 0.04 0.75 7.64 -51.93 -0.40 0.36 16 36 H 0.09 2.04 7.04 -51.93 -0.37 1.67 16 37 H 0.03 0.63 7.41 -51.93 -0.38 0.25 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.00 0.14 8.05 -51.93 -0.42 -0.28 16 41 H 0.02 0.74 7.96 -51.93 -0.41 0.33 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -36.07 360.17 -9.69 -45.76 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.68 Total: -0.50 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -3.78 Total: 12.39 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: 0.05 Total: -65.15 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.69 Total: -15.33 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.07 -9.69 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.198 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds