Wall clock time and date at job start Tue Mar 31 2020 14:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45207 * 109.46780 * 2 1 4 4 C 1.34837 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.21592 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.46814 * 119.99983 * 180.02562 * 4 3 2 7 7 C 1.36467 * 126.86239 * 6.37251 * 6 4 3 8 8 N 1.35706 * 109.63909 * 180.02562 * 7 6 4 9 9 H 0.96994 * 124.71475 * 179.97438 * 8 7 6 10 10 C 1.37096 * 110.56580 * 0.02562 * 8 7 6 11 11 N 1.33233 * 134.04146 * 180.02562 * 10 8 7 12 12 C 1.31547 * 120.72908 * 179.97438 * 11 10 8 13 13 N 1.32043 * 122.67167 * 0.03568 * 12 11 10 14 14 C 1.33038 * 120.94529 * 359.94406 * 13 12 11 15 15 N 1.38382 * 120.83029 * 180.02562 * 14 13 12 16 16 C 1.46904 * 110.99889 * 298.57604 * 15 14 13 17 17 C 1.52995 * 109.47335 * 290.11224 * 16 15 14 18 18 C 1.46897 * 111.00549 * 62.53082 * 15 14 13 19 19 C 1.50696 * 109.47283 * 163.61528 * 18 15 14 20 20 H 1.08002 * 120.00296 * 3.43655 * 19 18 15 21 21 C 1.37884 * 119.99968 * 183.42893 * 19 18 15 22 22 N 1.31514 * 119.99680 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47386 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46876 * 120.00301 * 23 21 19 26 26 H 1.48498 * 109.47006 * 239.99907 * 23 21 19 27 27 C 1.40031 * 118.34384 * 0.03613 * 14 13 12 28 28 H 1.09005 * 109.46551 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46607 * 299.99466 * 1 2 3 30 30 H 1.08998 * 109.47543 * 59.99546 * 1 2 3 31 31 H 1.09003 * 109.47044 * 240.00789 * 2 1 3 32 32 H 1.08998 * 109.47543 * 120.00453 * 2 1 3 33 33 H 1.08003 * 125.18009 * 0.02562 * 7 6 4 34 34 H 1.08004 * 118.66172 * 180.02562 * 12 11 10 35 35 H 1.09006 * 109.46748 * 50.11046 * 16 15 14 36 36 H 1.08996 * 109.47078 * 170.10425 * 16 15 14 37 37 H 1.08995 * 109.47685 * 55.83087 * 17 16 15 38 38 H 1.08999 * 109.47011 * 175.83085 * 17 16 15 39 39 H 1.09001 * 109.47018 * 295.82695 * 17 16 15 40 40 H 1.08991 * 109.47159 * 283.62399 * 18 15 14 41 41 H 1.09006 * 109.46428 * 43.62110 * 18 15 14 42 42 H 0.97001 * 119.99337 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3507 1.5458 0.0005 5 8 4.0914 0.5815 0.0005 6 6 3.9118 2.9025 0.0011 7 6 3.2218 4.0737 0.1224 8 7 4.0862 5.1189 0.0779 9 1 3.8288 6.0518 0.1440 10 6 5.3736 4.6731 -0.0747 11 7 6.5575 5.2766 -0.1709 12 6 7.6604 4.5741 -0.3150 13 7 7.6628 3.2550 -0.3727 14 6 6.5291 2.5643 -0.2851 15 7 6.5345 1.1818 -0.3453 16 6 7.0650 0.7130 -1.6325 17 6 6.0660 1.0382 -2.7448 18 6 7.2911 0.6088 0.7759 19 6 6.9512 -0.8526 0.9165 20 1 6.2869 -1.3233 0.2069 21 6 7.4886 -1.5890 1.9510 22 7 8.2974 -1.0157 2.8153 23 14 7.0679 -3.4007 2.1248 24 1 6.1448 -3.8015 1.0329 25 1 8.3118 -4.2078 2.0422 26 1 6.4134 -3.6331 3.4373 27 6 5.3302 3.2711 -0.1305 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.1510 4.1561 0.2365 34 1 8.6021 5.0977 -0.3892 35 1 8.0125 1.2113 -1.8381 36 1 7.2231 -0.3646 -1.5896 37 1 5.8515 2.1068 -2.7396 38 1 6.4912 0.7576 -3.7084 39 1 5.1436 0.4817 -2.5787 40 1 8.3589 0.7170 0.5866 41 1 7.0301 1.1326 1.6956 42 1 8.6751 -1.5337 3.5432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:59 Heat of formation + Delta-G solvation = -0.325868 kcal Electronic energy + Delta-G solvation = -27715.522030 eV Core-core repulsion = 23889.621925 eV Total energy + Delta-G solvation = -3825.900105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.12853 -40.83542 -40.17056 -38.37535 -37.10619 -34.91364 -33.85795 -32.71404 -32.22287 -31.71959 -30.57604 -28.44583 -25.48937 -25.27455 -24.38683 -24.31162 -23.30113 -22.28464 -20.82534 -20.07955 -18.52454 -18.30083 -17.76417 -17.38319 -17.21730 -16.97569 -16.69573 -16.41992 -16.12226 -15.65945 -15.57489 -14.84214 -14.73804 -14.49774 -14.31400 -14.02548 -14.01107 -13.92310 -13.46481 -12.94862 -12.86298 -12.74854 -12.65232 -12.42335 -12.34491 -12.11716 -12.08942 -11.97595 -11.52717 -11.33714 -11.27428 -11.15052 -10.62698 -10.39523 -10.32395 -9.26493 -9.21244 -8.18550 -6.26312 -0.40989 0.13060 0.77549 1.37960 1.39535 1.46402 1.54392 1.87775 2.30687 2.39915 2.77014 2.81931 3.13845 3.22791 3.39469 3.71700 3.80632 3.90721 4.15455 4.19830 4.24003 4.33090 4.43279 4.47213 4.52599 4.62789 4.77697 4.85032 4.95555 5.01769 5.05691 5.06628 5.11436 5.16534 5.27388 5.30583 5.49543 5.68738 5.72970 5.77507 6.06958 6.18833 6.37860 6.68827 6.86482 7.13241 7.22880 7.40507 8.93711 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.009312 B = 0.006433 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.169463 B = 4351.355219 C = 6333.518656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.507 3.493 5 O -0.480 6.480 6 C -0.217 4.217 7 C 0.185 3.815 8 N -0.535 5.535 9 H 0.450 0.550 10 C 0.308 3.692 11 N -0.533 5.533 12 C 0.315 3.685 13 N -0.591 5.591 14 C 0.392 3.608 15 N -0.464 5.464 16 C 0.066 3.934 17 C -0.119 4.119 18 C 0.240 3.760 19 C -0.497 4.497 20 H 0.063 0.937 21 C -0.004 4.004 22 N -0.940 5.940 23 Si 0.972 3.028 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.279 1.279 27 C -0.171 4.171 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.255 0.745 34 H 0.231 0.769 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.080 0.920 39 H 0.052 0.948 40 H -0.031 1.031 41 H -0.020 1.020 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.893 12.451 -8.328 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 O -0.277 6.277 4 C 0.350 3.650 5 O -0.365 6.365 6 C -0.227 4.227 7 C 0.053 3.947 8 N -0.143 5.143 9 H 0.294 0.706 10 C 0.067 3.933 11 N -0.253 5.253 12 C 0.024 3.976 13 N -0.312 5.312 14 C 0.151 3.849 15 N -0.188 5.188 16 C -0.061 4.061 17 C -0.177 4.177 18 C 0.115 3.885 19 C -0.535 4.535 20 H 0.081 0.919 21 C -0.200 4.200 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.205 1.205 27 C -0.182 4.182 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.271 0.729 34 H 0.247 0.753 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.071 0.929 40 H -0.014 1.014 41 H -0.002 1.002 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.263 12.563 -8.206 22.128 hybrid contribution 0.666 -0.966 0.657 1.344 sum -15.597 11.597 -7.549 20.851 Atomic orbital electron populations 1.21771 0.89682 1.04059 1.03982 1.23110 0.97100 0.79724 1.01587 1.86456 1.22982 1.32776 1.85460 1.20230 0.80818 0.89261 0.74684 1.91182 1.59965 1.42129 1.43188 1.18958 0.90738 0.91563 1.21404 1.23152 0.97510 0.82705 0.91337 1.41258 1.01344 1.11235 1.60506 0.70645 1.18524 0.87920 0.88214 0.98664 1.67504 0.96402 1.41125 1.20297 1.25145 0.96225 0.85843 0.90341 1.68821 1.31393 1.11332 1.19614 1.20237 0.87116 0.91488 0.86084 1.60227 1.54569 0.99825 1.04144 1.21983 0.95793 1.00528 0.87827 1.21558 0.99082 0.99848 0.97212 1.19101 0.88895 0.94509 0.86015 1.21311 1.26689 0.93931 1.11597 0.91896 1.25938 0.95079 1.03781 0.95239 1.70132 1.33431 1.38205 1.16368 0.85293 0.78162 0.78791 0.78117 1.18797 1.20061 1.20459 1.20122 0.94260 0.94443 1.09367 0.88963 0.90918 0.90559 0.92312 0.93117 0.72873 0.75317 0.95316 0.91112 0.94737 0.90163 0.92890 1.01351 1.00162 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.29 71.98 0.74 -1.37 16 2 C 0.06 1.48 6.20 71.98 0.45 1.93 16 3 O -0.36 -9.88 10.06 -57.50 -0.58 -10.45 16 4 C 0.51 18.22 7.93 70.06 0.56 18.77 16 5 O -0.48 -22.26 14.31 19.54 0.28 -21.98 16 6 C -0.22 -6.84 6.27 -19.11 -0.12 -6.96 16 7 C 0.19 3.27 11.65 83.68 0.97 4.25 16 8 N -0.53 -9.53 5.95 -191.79 -1.14 -10.67 16 9 H 0.45 3.90 8.96 -92.71 -0.83 3.07 16 10 C 0.31 9.24 8.46 133.76 1.13 10.38 16 11 N -0.53 -16.51 10.47 -197.92 -2.07 -18.58 16 12 C 0.32 10.50 12.23 180.88 2.21 12.71 16 13 N -0.59 -25.13 9.74 -197.34 -1.92 -27.05 16 14 C 0.39 17.63 4.26 133.30 0.57 18.20 16 15 N -0.46 -23.25 1.93 -705.34 -1.36 -24.61 16 16 C 0.07 2.95 5.48 86.30 0.47 3.42 16 17 C -0.12 -4.33 10.00 71.98 0.72 -3.61 16 18 C 0.24 14.41 4.54 85.56 0.39 14.80 16 19 C -0.50 -30.67 8.47 25.60 0.22 -30.45 16 20 H 0.06 3.89 7.54 -2.91 -0.02 3.87 16 21 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 22 N -0.94 -60.46 13.29 21.45 0.28 -60.17 16 23 Si 0.97 47.42 29.54 68.60 2.03 49.44 16 24 H -0.26 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 27 C -0.17 -6.50 6.30 -19.98 -0.13 -6.62 16 28 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.26 1.44 8.06 -2.91 -0.02 1.41 16 34 H 0.23 5.59 8.06 -2.91 -0.02 5.57 16 35 H 0.03 1.30 7.64 -2.38 -0.02 1.28 16 36 H 0.07 3.39 7.04 -2.39 -0.02 3.38 16 37 H 0.03 1.24 7.41 -2.39 -0.02 1.22 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H -0.03 -2.03 8.05 -2.39 -0.02 -2.05 16 41 H -0.02 -1.33 7.96 -2.38 -0.02 -1.35 16 42 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -87.35 360.17 4.38 -82.96 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.22 Total: 5.44 kcal Atomic # 6 Polarization: 27.02 SS G_CDS: 8.64 Total: 35.67 kcal Atomic # 7 Polarization: -134.87 SS G_CDS: -6.21 Total: -141.08 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.30 Total: -32.43 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -87.35 4.38 -82.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.639 kcal (2) G-P(sol) polarization free energy of solvation -87.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds