Wall clock time and date at job start Tue Mar 31 2020 14:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47143 * 2 1 4 4 C 1.34831 * 117.00001 * 180.02562 * 3 2 1 5 5 O 1.21579 * 119.99833 * 359.72012 * 4 3 2 6 6 C 1.46796 * 119.99890 * 179.97438 * 4 3 2 7 7 C 1.36795 * 126.77439 * 359.40541 * 6 4 3 8 8 N 1.34631 * 109.78094 * 179.86432 * 7 6 4 9 9 H 0.96999 * 124.77206 * 180.15082 * 8 7 6 10 10 C 1.37767 * 110.45150 * 0.41602 * 8 7 6 11 11 C 1.40342 * 107.60156 * 359.75073 * 10 8 7 12 12 N 1.33190 * 119.32227 * 179.97438 * 11 10 8 13 13 C 1.31620 * 120.45186 * 359.97438 * 12 11 10 14 14 N 1.32032 * 122.27119 * 359.97438 * 13 12 11 15 15 C 1.32969 * 121.32365 * 0.02562 * 14 13 12 16 16 N 1.38557 * 120.70149 * 180.02562 * 15 14 13 17 17 C 1.46502 * 120.00140 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.47135 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47145 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47280 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99935 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00274 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99857 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99897 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47326 * 89.99727 * 24 22 20 26 26 H 1.48497 * 109.47445 * 210.00122 * 24 22 20 27 27 H 1.48508 * 109.47066 * 329.99987 * 24 22 20 28 28 H 1.09001 * 109.46982 * 60.00310 * 1 2 3 29 29 H 1.08994 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47016 * 300.00315 * 1 2 3 31 31 H 1.09001 * 109.47443 * 239.99508 * 2 1 3 32 32 H 1.08997 * 109.47247 * 119.99242 * 2 1 3 33 33 H 1.07999 * 125.10867 * 0.02814 * 7 6 4 34 34 H 1.07999 * 118.85876 * 179.97438 * 13 12 11 35 35 H 0.97000 * 119.99592 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.46933 * 300.00029 * 17 16 15 37 37 H 1.09003 * 109.46997 * 59.99730 * 17 16 15 38 38 H 1.09003 * 109.46525 * 299.99420 * 18 17 16 39 39 H 1.08994 * 109.46992 * 59.99514 * 18 17 16 40 40 H 1.09002 * 109.46902 * 300.00114 * 19 18 17 41 41 H 1.08995 * 109.47173 * 59.99528 * 19 18 17 42 42 H 0.97001 * 119.99788 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3507 1.5456 -0.0005 5 8 4.0913 0.5814 0.0042 6 6 3.9117 2.9021 -0.0011 7 6 3.2122 4.0777 -0.0126 8 7 4.0679 5.1171 -0.0061 9 1 3.8044 6.0506 -0.0099 10 6 5.3704 4.6683 0.0005 11 6 5.3359 3.2653 0.0040 12 7 6.4807 2.5847 0.0100 13 6 7.6339 3.2191 0.0123 14 7 7.7135 4.5370 0.0082 15 6 6.6214 5.2955 0.0021 16 7 6.7199 6.6775 -0.0027 17 6 8.0375 7.3180 -0.0015 18 6 7.8656 8.8383 -0.0081 19 6 9.2416 9.5072 -0.0076 20 6 9.0723 11.0046 -0.0147 21 1 8.0822 11.4361 -0.0196 22 6 10.1813 11.8238 -0.0150 23 7 10.0334 13.1306 -0.0217 24 14 11.8937 11.0776 -0.0058 25 1 12.3521 10.8731 -1.4034 26 1 12.8296 11.9946 0.6930 27 1 11.8608 9.7716 0.7005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.1354 4.1596 -0.0225 34 1 8.5465 2.6416 0.0176 35 1 5.9164 7.2210 -0.0075 36 1 8.5865 7.0179 0.8910 37 1 8.5913 7.0114 -0.8889 38 1 7.3167 9.1379 -0.9010 39 1 7.3116 9.1451 0.8790 40 1 9.7909 9.2075 0.8850 41 1 9.7951 9.2002 -0.8949 42 1 10.8137 13.7070 -0.0223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:52 Heat of formation + Delta-G solvation = -13.116163 kcal Electronic energy + Delta-G solvation = -24950.883246 eV Core-core repulsion = 21124.428512 eV Total energy + Delta-G solvation = -3826.454734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25670 -40.20411 -38.97845 -36.98292 -36.52090 -34.18579 -32.66781 -32.18164 -31.54507 -30.72031 -29.87094 -27.05436 -24.80491 -24.12070 -23.58157 -22.80154 -22.19066 -20.66151 -20.16908 -19.15413 -17.84174 -17.44515 -16.91978 -16.78710 -16.72688 -16.05676 -15.83822 -15.58591 -14.91876 -14.67936 -14.48712 -14.22315 -13.94826 -13.58006 -13.47210 -13.23334 -12.89682 -12.73216 -12.60381 -12.21424 -12.01715 -11.90352 -11.41519 -11.28043 -11.07555 -10.87417 -10.74868 -10.60570 -10.16004 -9.97286 -9.78970 -9.58572 -9.30599 -9.08620 -9.04072 -8.61704 -7.86270 -6.12486 -4.11868 0.67057 1.09186 1.63723 2.30913 2.54547 2.95641 2.96013 3.26864 3.34917 3.38281 3.86228 3.93696 4.19870 4.31179 4.38859 4.50741 4.60377 4.63696 4.66774 4.91076 4.96121 5.03934 5.21589 5.40563 5.41803 5.45310 5.55407 5.57683 5.65189 5.90525 5.92488 6.20688 6.28836 6.33553 6.45372 6.62255 6.72248 6.77841 7.02138 7.13882 7.27463 7.50245 7.69003 7.77503 8.34425 8.42981 8.90446 9.49480 11.00628 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.035200 B = 0.002040 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.253005 B =13723.554976 C =14482.448930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.364 6.364 4 C 0.538 3.462 5 O -0.495 6.495 6 C -0.228 4.228 7 C 0.167 3.833 8 N -0.545 5.545 9 H 0.425 0.575 10 C -0.093 4.093 11 C 0.209 3.791 12 N -0.527 5.527 13 C 0.336 3.664 14 N -0.571 5.571 15 C 0.474 3.526 16 N -0.705 5.705 17 C 0.124 3.876 18 C -0.115 4.115 19 C -0.009 4.009 20 C -0.525 4.525 21 H 0.071 0.929 22 C 0.067 3.933 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.264 1.264 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.198 0.802 34 H 0.199 0.801 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.020 0.980 41 H 0.015 0.985 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.477 -22.334 0.037 29.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.282 6.282 4 C 0.382 3.618 5 O -0.382 6.382 6 C -0.239 4.239 7 C 0.026 3.974 8 N -0.145 5.145 9 H 0.263 0.737 10 C -0.205 4.205 11 C 0.072 3.928 12 N -0.246 5.246 13 C 0.045 3.955 14 N -0.298 5.298 15 C 0.222 3.778 16 N -0.336 5.336 17 C 0.001 3.999 18 C -0.153 4.153 19 C -0.047 4.047 20 C -0.563 4.563 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.541 5.541 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.188 1.188 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.214 0.786 34 H 0.215 0.785 35 H 0.240 0.760 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.146 -22.855 0.051 29.183 hybrid contribution -0.186 0.830 -0.029 0.851 sum -18.331 -22.025 0.021 28.655 Atomic orbital electron populations 1.21805 0.92711 1.02954 1.03429 1.22969 0.95041 0.80164 1.02707 1.86512 1.24110 1.32325 1.85282 1.19746 0.80100 0.88538 0.73385 1.90901 1.60052 1.41722 1.45476 1.18646 0.89918 0.90269 1.25086 1.22318 0.96492 0.85175 0.93413 1.41096 1.03908 1.09327 1.60167 0.73681 1.19190 0.85625 0.96191 1.19541 1.19212 0.91873 0.86764 0.94944 1.67939 0.96739 1.39941 1.19986 1.24644 0.95404 0.86052 0.89353 1.68101 1.28263 1.08089 1.25365 1.17815 0.85509 0.86215 0.88294 1.44874 1.10513 1.01048 1.77153 1.21723 0.82157 0.93620 1.02399 1.21734 1.01397 0.90601 1.01594 1.19481 0.91870 0.96604 0.96770 1.21076 0.94891 0.88897 1.51417 0.91099 1.25028 0.99328 0.94712 0.94366 1.69908 1.30398 1.02984 1.50771 0.86770 0.84284 0.79582 0.78635 1.20213 1.21324 1.18840 0.91506 0.90293 0.91510 0.91250 0.91248 0.78561 0.78456 0.75963 0.91372 0.91389 0.92223 0.92193 0.96213 0.96650 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.30 16 2 C 0.07 0.49 6.20 37.16 0.23 0.72 16 3 O -0.36 -3.48 10.05 -40.85 -0.41 -3.89 16 4 C 0.54 6.77 7.94 34.19 0.27 7.04 16 5 O -0.49 -7.96 16.75 -19.33 -0.32 -8.28 16 6 C -0.23 -2.65 6.27 -103.42 -0.65 -3.29 16 7 C 0.17 1.16 11.61 -16.85 -0.20 0.96 16 8 N -0.54 -3.93 5.94 -10.43 -0.06 -3.99 16 9 H 0.42 1.59 8.96 -40.82 -0.37 1.22 16 10 C -0.09 -1.10 7.20 -83.77 -0.60 -1.70 16 11 C 0.21 2.94 7.40 -82.95 -0.61 2.33 16 12 N -0.53 -8.12 10.49 -11.31 -0.12 -8.24 16 13 C 0.34 4.57 12.26 -92.10 -1.13 3.44 16 14 N -0.57 -8.29 9.69 -13.71 -0.13 -8.42 16 15 C 0.47 6.30 7.54 -154.66 -1.17 5.13 16 16 N -0.70 -8.59 5.70 -60.18 -0.34 -8.93 16 17 C 0.12 1.83 5.74 -4.04 -0.02 1.81 16 18 C -0.12 -1.99 5.27 -26.73 -0.14 -2.14 16 19 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 20 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 21 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 22 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 23 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 24 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.20 0.49 8.06 -52.49 -0.42 0.06 16 34 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.40 3.83 8.49 -40.82 -0.35 3.48 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 41 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -36.66 365.59 -9.67 -46.33 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.72 Total: -1.02 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -4.18 Total: 0.79 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.12 Total: -56.02 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.73 Total: -12.17 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.66 -9.67 -46.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.218 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds