Wall clock time and date at job start Tue Mar 31 2020 14:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47143 * 2 1 4 4 C 1.34831 * 117.00001 * 180.02562 * 3 2 1 5 5 O 1.21579 * 119.99833 * 359.72012 * 4 3 2 6 6 C 1.46796 * 119.99890 * 179.97438 * 4 3 2 7 7 C 1.36795 * 126.77439 * 359.40541 * 6 4 3 8 8 N 1.34631 * 109.78094 * 179.86432 * 7 6 4 9 9 H 0.96999 * 124.77206 * 180.15082 * 8 7 6 10 10 C 1.37767 * 110.45150 * 0.41602 * 8 7 6 11 11 C 1.40342 * 107.60156 * 359.75073 * 10 8 7 12 12 N 1.33190 * 119.32227 * 179.97438 * 11 10 8 13 13 C 1.31620 * 120.45186 * 359.97438 * 12 11 10 14 14 N 1.32032 * 122.27119 * 359.97438 * 13 12 11 15 15 C 1.32969 * 121.32365 * 0.02562 * 14 13 12 16 16 N 1.38557 * 120.70149 * 180.02562 * 15 14 13 17 17 C 1.46502 * 120.00140 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.47135 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47145 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47280 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99935 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00274 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99857 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99897 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47326 * 89.99727 * 24 22 20 26 26 H 1.48497 * 109.47445 * 210.00122 * 24 22 20 27 27 H 1.48508 * 109.47066 * 329.99987 * 24 22 20 28 28 H 1.09001 * 109.46982 * 60.00310 * 1 2 3 29 29 H 1.08994 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47016 * 300.00315 * 1 2 3 31 31 H 1.09001 * 109.47443 * 239.99508 * 2 1 3 32 32 H 1.08997 * 109.47247 * 119.99242 * 2 1 3 33 33 H 1.07999 * 125.10867 * 0.02814 * 7 6 4 34 34 H 1.07999 * 118.85876 * 179.97438 * 13 12 11 35 35 H 0.97000 * 119.99592 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.46933 * 300.00029 * 17 16 15 37 37 H 1.09003 * 109.46997 * 59.99730 * 17 16 15 38 38 H 1.09003 * 109.46525 * 299.99420 * 18 17 16 39 39 H 1.08994 * 109.46992 * 59.99514 * 18 17 16 40 40 H 1.09002 * 109.46902 * 300.00114 * 19 18 17 41 41 H 1.08995 * 109.47173 * 59.99528 * 19 18 17 42 42 H 0.97001 * 119.99788 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3507 1.5456 -0.0005 5 8 4.0913 0.5814 0.0042 6 6 3.9117 2.9021 -0.0011 7 6 3.2122 4.0777 -0.0126 8 7 4.0679 5.1171 -0.0061 9 1 3.8044 6.0506 -0.0099 10 6 5.3704 4.6683 0.0005 11 6 5.3359 3.2653 0.0040 12 7 6.4807 2.5847 0.0100 13 6 7.6339 3.2191 0.0123 14 7 7.7135 4.5370 0.0082 15 6 6.6214 5.2955 0.0021 16 7 6.7199 6.6775 -0.0027 17 6 8.0375 7.3180 -0.0015 18 6 7.8656 8.8383 -0.0081 19 6 9.2416 9.5072 -0.0076 20 6 9.0723 11.0046 -0.0147 21 1 8.0822 11.4361 -0.0196 22 6 10.1813 11.8238 -0.0150 23 7 10.0334 13.1306 -0.0217 24 14 11.8937 11.0776 -0.0058 25 1 12.3521 10.8731 -1.4034 26 1 12.8296 11.9946 0.6930 27 1 11.8608 9.7716 0.7005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.1354 4.1596 -0.0225 34 1 8.5465 2.6416 0.0176 35 1 5.9164 7.2210 -0.0075 36 1 8.5865 7.0179 0.8910 37 1 8.5913 7.0114 -0.8889 38 1 7.3167 9.1379 -0.9010 39 1 7.3116 9.1451 0.8790 40 1 9.7909 9.2075 0.8850 41 1 9.7951 9.2002 -0.8949 42 1 10.8137 13.7070 -0.0223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:50 Heat of formation + Delta-G solvation = -37.725817 kcal Electronic energy + Delta-G solvation = -24951.950400 eV Core-core repulsion = 21124.428512 eV Total energy + Delta-G solvation = -3827.521889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.10736 -41.07203 -39.85462 -38.09672 -37.41078 -35.77992 -34.19926 -32.94630 -32.77850 -31.46113 -30.99627 -28.59238 -25.66882 -25.15157 -24.71936 -23.57004 -23.23171 -22.15421 -21.09382 -20.06112 -18.90382 -18.75333 -18.35957 -17.72910 -17.50452 -16.82180 -16.80532 -16.61372 -16.23192 -16.11276 -15.58624 -15.19178 -15.00027 -14.73064 -14.39221 -14.33549 -13.93603 -13.87161 -13.77222 -13.44301 -12.93806 -12.81405 -12.75136 -12.43248 -12.35462 -12.13356 -11.84132 -11.72660 -11.57009 -11.54207 -11.44011 -11.32278 -10.76103 -10.56165 -10.11423 -9.84498 -8.83358 -8.29533 -6.33466 -0.15722 0.15531 0.73971 1.37643 1.39635 1.50865 1.59231 1.79602 1.98882 2.09040 2.36538 2.95016 3.06748 3.07168 3.26693 3.53862 3.70048 3.88488 4.08411 4.10701 4.16527 4.23040 4.28357 4.35440 4.45093 4.50913 4.72434 4.91849 4.95674 4.99554 5.00841 5.04383 5.12003 5.22573 5.37805 5.48904 5.52327 5.56568 5.64311 5.73344 6.01127 6.22469 6.26935 6.58958 6.74924 6.90867 7.31659 7.36939 8.86711 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.035200 B = 0.002040 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.253005 B =13723.554976 C =14482.448930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 O -0.352 6.352 4 C 0.540 3.460 5 O -0.545 6.545 6 C -0.273 4.273 7 C 0.219 3.781 8 N -0.524 5.524 9 H 0.446 0.554 10 C -0.092 4.092 11 C 0.177 3.823 12 N -0.560 5.560 13 C 0.328 3.672 14 N -0.592 5.592 15 C 0.465 3.535 16 N -0.696 5.696 17 C 0.141 3.859 18 C -0.102 4.102 19 C -0.011 4.011 20 C -0.531 4.531 21 H 0.037 0.963 22 C 0.005 3.995 23 N -0.950 5.950 24 Si 0.946 3.054 25 H -0.268 1.268 26 H -0.287 1.287 27 H -0.245 1.245 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.253 0.747 34 H 0.220 0.780 35 H 0.419 0.581 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.229 -22.965 0.024 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.270 6.270 4 C 0.387 3.613 5 O -0.436 6.436 6 C -0.284 4.284 7 C 0.076 3.924 8 N -0.125 5.125 9 H 0.289 0.711 10 C -0.205 4.205 11 C 0.040 3.960 12 N -0.280 5.280 13 C 0.038 3.962 14 N -0.321 5.321 15 C 0.214 3.786 16 N -0.329 5.329 17 C 0.017 3.983 18 C -0.140 4.140 19 C -0.049 4.049 20 C -0.569 4.569 21 H 0.055 0.945 22 C -0.192 4.192 23 N -0.591 5.591 24 Si 0.770 3.230 25 H -0.193 1.193 26 H -0.212 1.212 27 H -0.168 1.168 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.268 0.732 34 H 0.236 0.764 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.957 -23.460 0.037 30.800 hybrid contribution 0.180 1.050 -0.028 1.065 sum -19.777 -22.410 0.010 29.889 Atomic orbital electron populations 1.21808 0.89901 1.04301 1.04001 1.23239 0.97118 0.79222 1.02180 1.86503 1.22367 1.33447 1.84652 1.19998 0.80634 0.88541 0.72157 1.90870 1.61254 1.43270 1.48180 1.18805 0.89467 0.91409 1.28681 1.23059 0.98144 0.83085 0.88098 1.41148 1.02211 1.10687 1.58501 0.71150 1.18959 0.86856 0.95298 1.19356 1.19761 0.92619 0.88098 0.95501 1.67937 0.97809 1.41188 1.21037 1.25053 0.95906 0.86114 0.89110 1.68095 1.29216 1.08512 1.26229 1.17902 0.86044 0.86250 0.88450 1.44579 1.10122 1.00801 1.77410 1.21310 0.83323 0.91754 1.01889 1.21494 0.98550 0.91968 1.02001 1.19443 0.94952 0.93579 0.96920 1.21481 0.93442 0.91777 1.50245 0.94472 1.25983 1.03980 0.95040 0.94232 1.70058 1.31697 1.04659 1.52704 0.85710 0.78742 0.79373 0.79166 1.19328 1.21249 1.16846 0.90871 0.88596 0.90895 0.91883 0.91908 0.73155 0.76428 0.74294 0.91997 0.91944 0.91842 0.91850 0.95985 0.96112 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 10.29 71.98 0.74 -0.23 16 2 C 0.06 0.80 6.20 71.98 0.45 1.25 16 3 O -0.35 -6.21 10.05 -57.43 -0.58 -6.79 16 4 C 0.54 13.44 7.94 70.06 0.56 13.99 16 5 O -0.54 -18.27 16.75 19.58 0.33 -17.94 16 6 C -0.27 -5.95 6.27 -19.09 -0.12 -6.07 16 7 C 0.22 2.16 11.61 83.93 0.97 3.13 16 8 N -0.52 -5.62 5.94 -186.92 -1.11 -6.73 16 9 H 0.45 1.26 8.96 -92.71 -0.83 0.43 16 10 C -0.09 -2.00 7.20 39.13 0.28 -1.72 16 11 C 0.18 4.90 7.40 41.74 0.31 5.21 16 12 N -0.56 -17.68 10.49 -189.69 -1.99 -19.67 16 13 C 0.33 9.06 12.26 180.86 2.22 11.28 16 14 N -0.59 -16.93 9.69 -197.29 -1.91 -18.85 16 15 C 0.47 11.72 7.54 133.24 1.00 12.72 16 16 N -0.70 -15.49 5.70 -344.31 -1.96 -17.45 16 17 C 0.14 3.93 5.74 86.38 0.50 4.42 16 18 C -0.10 -3.37 5.27 30.59 0.16 -3.21 16 19 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 20 C -0.53 -29.25 9.66 25.60 0.25 -29.00 16 21 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 22 C 0.00 0.26 5.47 84.65 0.46 0.72 16 23 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 24 Si 0.95 43.31 27.47 68.60 1.88 45.20 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.25 -10.38 6.54 99.48 0.65 -9.73 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.25 -0.36 8.06 -2.91 -0.02 -0.39 16 34 H 0.22 4.57 8.06 -2.91 -0.02 4.54 16 35 H 0.42 6.73 8.49 -92.71 -0.79 5.94 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 41 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -83.82 365.59 2.26 -81.56 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -0.60 Total: 6.60 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 7.90 Total: 12.15 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -6.67 Total: -120.77 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.25 Total: -24.73 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.20 kcal Total: -83.82 2.26 -81.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.838 kcal (2) G-P(sol) polarization free energy of solvation -83.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds