Wall clock time and date at job start Tue Mar 31 2020 14:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47163 * 2 1 4 4 C 1.34741 * 116.99885 * 179.97438 * 3 2 1 5 5 O 1.21511 * 120.00452 * 0.02562 * 4 3 2 6 6 C 1.47509 * 120.00215 * 179.97438 * 4 3 2 7 7 C 1.37985 * 126.04639 * 180.02562 * 6 4 3 8 8 N 1.34944 * 106.99591 * 180.23398 * 7 6 4 9 9 C 1.37005 * 133.23439 * 180.38334 * 8 7 6 10 10 C 1.35651 * 119.69795 * 179.62850 * 9 8 7 11 11 N 1.39745 * 119.43583 * 179.77049 * 10 9 8 12 12 C 1.46497 * 120.00618 * 0.02636 * 11 10 9 13 13 C 1.53000 * 109.47434 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46761 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46798 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99878 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00166 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00096 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99858 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47098 * 89.99963 * 19 17 15 21 21 H 1.48497 * 109.47270 * 209.99947 * 19 17 15 22 22 H 1.48498 * 109.46969 * 330.00009 * 19 17 15 23 23 N 1.33883 * 121.12399 * 359.79804 * 10 9 8 24 24 C 1.31032 * 121.36787 * 359.97438 * 23 10 9 25 25 C 1.37462 * 107.62822 * 359.63737 * 8 7 6 26 26 N 1.32089 * 108.49244 * 0.37246 * 25 8 7 27 27 H 1.09001 * 109.47740 * 59.99222 * 1 2 3 28 28 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46545 * 299.99570 * 1 2 3 30 30 H 1.09005 * 109.46927 * 240.00802 * 2 1 3 31 31 H 1.08996 * 109.47410 * 120.00472 * 2 1 3 32 32 H 1.08002 * 126.49832 * 359.96377 * 7 6 4 33 33 H 1.08003 * 120.15000 * 359.40491 * 9 8 7 34 34 H 0.97002 * 119.99978 * 180.02562 * 11 10 9 35 35 H 1.09003 * 109.47193 * 300.00267 * 12 11 10 36 36 H 1.09010 * 109.46934 * 59.99346 * 12 11 10 37 37 H 1.09003 * 109.46907 * 299.99713 * 13 12 11 38 38 H 1.08994 * 109.47045 * 60.00143 * 13 12 11 39 39 H 1.08995 * 109.47286 * 299.99796 * 14 13 12 40 40 H 1.09002 * 109.47114 * 60.00511 * 14 13 12 41 41 H 0.96998 * 119.99610 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.07039 * 179.97438 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0900 0.5819 0.0005 6 6 3.9137 2.9086 0.0000 7 6 5.2550 3.2324 0.0000 8 7 5.3356 4.5794 0.0047 9 6 6.3880 5.4566 0.0002 10 6 6.1498 6.7920 -0.0004 11 7 7.2274 7.6818 -0.0001 12 6 8.6001 7.1701 0.0002 13 6 9.5819 8.3435 -0.0002 14 6 11.0155 7.8089 -0.0005 15 6 11.9825 8.9647 -0.0016 16 1 11.6117 9.9791 -0.0015 17 6 13.3407 8.7272 -0.0025 18 7 14.1846 9.7359 -0.0029 19 14 13.9821 6.9728 -0.0019 20 1 14.1508 6.5069 -1.4019 21 1 15.2914 6.9246 0.6970 22 1 13.0138 6.0921 0.6996 23 7 4.9000 7.2720 -0.0007 24 6 3.8621 6.4722 -0.0009 25 6 4.0528 5.0732 -0.0007 26 7 3.2117 4.0547 -0.0004 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 6.0832 2.5392 0.0009 33 1 7.4027 5.0865 0.0007 34 1 7.0664 8.6384 -0.0002 35 1 8.7608 6.5616 0.8902 36 1 8.7612 6.5616 -0.8898 37 1 9.4210 8.9515 -0.8905 38 1 9.4209 8.9522 0.8895 39 1 11.1766 7.2007 0.8894 40 1 11.1762 7.2005 -0.8906 41 1 15.1401 9.5688 -0.0032 42 1 2.8630 6.8821 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:34 Heat of formation + Delta-G solvation = 14.678518 kcal Electronic energy + Delta-G solvation = -24695.707159 eV Core-core repulsion = 20870.457693 eV Total energy + Delta-G solvation = -3825.249466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.38766 -40.54463 -39.22953 -36.88066 -36.40217 -34.62966 -33.72586 -32.11575 -31.79978 -30.39205 -29.03134 -27.22015 -25.81724 -24.35141 -23.34443 -22.87938 -22.39822 -20.91719 -20.57489 -19.17707 -17.89156 -17.76310 -17.01688 -16.88213 -16.52701 -16.41973 -15.84586 -15.63594 -15.22059 -15.07923 -14.66290 -14.43963 -14.12288 -13.82081 -13.56616 -13.47136 -13.14124 -12.79452 -12.40900 -12.32419 -12.10649 -11.95985 -11.86604 -11.27094 -11.15887 -11.05773 -10.85726 -10.76951 -10.34419 -10.31252 -10.12111 -9.93229 -9.84030 -9.35596 -8.91089 -8.65880 -7.75854 -6.15797 -4.15586 0.12825 0.88316 1.50562 1.88464 2.42140 2.83848 2.86807 3.21605 3.27627 3.30116 3.30880 3.55935 3.92214 4.23404 4.33889 4.39012 4.56935 4.60972 4.70102 4.75498 4.89818 5.04030 5.16996 5.17159 5.27666 5.32122 5.32832 5.41014 5.59831 5.66837 5.73742 5.83886 6.06556 6.12496 6.21469 6.32055 6.58704 6.73311 7.03531 7.06007 7.19405 7.25417 7.51737 7.62954 7.64684 8.39588 8.87834 9.45418 10.97382 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.002049 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.769189 B =13659.068462 C =14857.482504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.337 6.337 4 C 0.560 3.440 5 O -0.504 6.504 6 C 0.004 3.996 7 C 0.007 3.993 8 N -0.303 5.303 9 C -0.126 4.126 10 C 0.374 3.626 11 N -0.708 5.708 12 C 0.116 3.884 13 C -0.113 4.113 14 C -0.009 4.009 15 C -0.526 4.526 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 N -0.492 5.492 24 C 0.250 3.750 25 C 0.122 3.878 26 N -0.410 5.410 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.201 0.799 33 H 0.173 0.827 34 H 0.413 0.587 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.264 0.736 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.909 -15.429 0.024 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.253 6.253 4 C 0.404 3.596 5 O -0.392 6.392 6 C -0.133 4.133 7 C -0.138 4.138 8 N 0.029 4.971 9 C -0.257 4.257 10 C 0.154 3.846 11 N -0.338 5.338 12 C -0.007 4.007 13 C -0.151 4.151 14 C -0.047 4.047 15 C -0.564 4.564 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.538 5.538 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 N -0.206 5.206 24 C 0.064 3.936 25 C -0.125 4.125 26 N -0.133 5.133 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.218 0.782 33 H 0.190 0.810 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -25.962 -14.707 0.035 29.838 hybrid contribution 1.594 -1.602 -0.017 2.260 sum -24.369 -16.309 0.018 29.322 Atomic orbital electron populations 1.21803 0.92375 1.02945 1.03811 1.23107 0.95593 0.79833 1.02754 1.86658 1.22856 1.32194 1.83576 1.19469 0.80875 0.86897 0.72394 1.90881 1.60693 1.41104 1.46506 1.19523 0.89558 0.91001 1.13228 1.22607 0.98944 0.82173 1.10059 1.41961 1.08023 1.06417 1.40737 1.21203 0.92617 0.88280 1.23588 1.17336 0.86960 0.86899 0.93449 1.44846 1.02567 1.07835 1.78515 1.21854 0.78688 0.98996 1.01179 1.21693 0.95368 0.95702 1.02305 1.19499 0.91174 0.97479 0.96590 1.21065 0.90295 0.93497 1.51517 0.90939 1.25033 0.96970 0.97006 0.94397 1.69906 1.02597 1.30783 1.50560 0.86776 0.78452 0.85457 0.78559 1.20223 1.21265 1.19042 1.67688 0.97882 1.38512 1.16560 1.22711 0.98725 0.83503 0.88692 1.21955 0.80196 0.96923 1.13470 1.70656 1.30282 0.95843 1.16477 0.91315 0.90161 0.91313 0.91026 0.91026 0.78247 0.80970 0.75044 0.91796 0.91803 0.91741 0.91718 0.96317 0.96751 0.92583 0.78598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.06 0.47 6.20 37.16 0.23 0.70 16 3 O -0.34 -3.71 10.23 -40.60 -0.42 -4.12 16 4 C 0.56 6.82 7.96 34.51 0.27 7.10 16 5 O -0.50 -6.73 16.67 -19.27 -0.32 -7.05 16 6 C 0.00 0.05 7.02 -83.06 -0.58 -0.53 16 7 C 0.01 0.07 11.54 -16.28 -0.19 -0.11 16 8 N -0.30 -3.54 2.92 -62.00 -0.18 -3.72 16 9 C -0.13 -1.44 10.27 -16.17 -0.17 -1.60 16 10 C 0.37 4.47 7.60 -154.27 -1.17 3.30 16 11 N -0.71 -8.46 5.76 -60.78 -0.35 -8.81 16 12 C 0.12 1.51 4.88 -4.04 -0.02 1.49 16 13 C -0.11 -1.88 5.27 -26.73 -0.14 -2.02 16 14 C -0.01 -0.20 4.04 -27.88 -0.11 -0.32 16 15 C -0.53 -14.19 9.66 -34.44 -0.33 -14.53 16 16 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 19 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 23 N -0.49 -5.56 10.43 -12.16 -0.13 -5.69 16 24 C 0.25 2.42 11.34 -16.77 -0.19 2.23 16 25 C 0.12 1.42 7.82 -155.98 -1.22 0.20 16 26 N -0.41 -5.19 11.34 -9.07 -0.10 -5.29 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.20 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.17 1.74 6.56 -52.48 -0.34 1.40 16 34 H 0.41 4.68 8.60 -40.82 -0.35 4.33 16 35 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 36 H 0.06 0.80 7.90 -51.92 -0.41 0.39 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 40 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -32.57 364.02 -8.92 -41.49 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.67 Total: 0.48 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.33 Total: -2.70 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.01 Total: -49.67 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.74 Total: -11.17 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.57 -8.92 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.165 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds