Wall clock time and date at job start Tue Mar 31 2020 14:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47163 * 2 1 4 4 C 1.34741 * 116.99885 * 179.97438 * 3 2 1 5 5 O 1.21511 * 120.00452 * 0.02562 * 4 3 2 6 6 C 1.47509 * 120.00215 * 179.97438 * 4 3 2 7 7 C 1.37985 * 126.04639 * 180.02562 * 6 4 3 8 8 N 1.34944 * 106.99591 * 180.23398 * 7 6 4 9 9 C 1.37005 * 133.23439 * 180.38334 * 8 7 6 10 10 C 1.35651 * 119.69795 * 179.62850 * 9 8 7 11 11 N 1.39745 * 119.43583 * 179.77049 * 10 9 8 12 12 C 1.46497 * 120.00618 * 0.02636 * 11 10 9 13 13 C 1.53000 * 109.47434 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46761 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46798 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99878 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00166 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00096 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99858 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47098 * 89.99963 * 19 17 15 21 21 H 1.48497 * 109.47270 * 209.99947 * 19 17 15 22 22 H 1.48498 * 109.46969 * 330.00009 * 19 17 15 23 23 N 1.33883 * 121.12399 * 359.79804 * 10 9 8 24 24 C 1.31032 * 121.36787 * 359.97438 * 23 10 9 25 25 C 1.37462 * 107.62822 * 359.63737 * 8 7 6 26 26 N 1.32089 * 108.49244 * 0.37246 * 25 8 7 27 27 H 1.09001 * 109.47740 * 59.99222 * 1 2 3 28 28 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46545 * 299.99570 * 1 2 3 30 30 H 1.09005 * 109.46927 * 240.00802 * 2 1 3 31 31 H 1.08996 * 109.47410 * 120.00472 * 2 1 3 32 32 H 1.08002 * 126.49832 * 359.96377 * 7 6 4 33 33 H 1.08003 * 120.15000 * 359.40491 * 9 8 7 34 34 H 0.97002 * 119.99978 * 180.02562 * 11 10 9 35 35 H 1.09003 * 109.47193 * 300.00267 * 12 11 10 36 36 H 1.09010 * 109.46934 * 59.99346 * 12 11 10 37 37 H 1.09003 * 109.46907 * 299.99713 * 13 12 11 38 38 H 1.08994 * 109.47045 * 60.00143 * 13 12 11 39 39 H 1.08995 * 109.47286 * 299.99796 * 14 13 12 40 40 H 1.09002 * 109.47114 * 60.00511 * 14 13 12 41 41 H 0.96998 * 119.99610 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.07039 * 179.97438 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0900 0.5819 0.0005 6 6 3.9137 2.9086 0.0000 7 6 5.2550 3.2324 0.0000 8 7 5.3356 4.5794 0.0047 9 6 6.3880 5.4566 0.0002 10 6 6.1498 6.7920 -0.0004 11 7 7.2274 7.6818 -0.0001 12 6 8.6001 7.1701 0.0002 13 6 9.5819 8.3435 -0.0002 14 6 11.0155 7.8089 -0.0005 15 6 11.9825 8.9647 -0.0016 16 1 11.6117 9.9791 -0.0015 17 6 13.3407 8.7272 -0.0025 18 7 14.1846 9.7359 -0.0029 19 14 13.9821 6.9728 -0.0019 20 1 14.1508 6.5069 -1.4019 21 1 15.2914 6.9246 0.6970 22 1 13.0138 6.0921 0.6996 23 7 4.9000 7.2720 -0.0007 24 6 3.8621 6.4722 -0.0009 25 6 4.0528 5.0732 -0.0007 26 7 3.2117 4.0547 -0.0004 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 6.0832 2.5392 0.0009 33 1 7.4027 5.0865 0.0007 34 1 7.0664 8.6384 -0.0002 35 1 8.7608 6.5616 0.8902 36 1 8.7612 6.5616 -0.8898 37 1 9.4210 8.9515 -0.8905 38 1 9.4209 8.9522 0.8895 39 1 11.1766 7.2007 0.8894 40 1 11.1762 7.2005 -0.8906 41 1 15.1401 9.5688 -0.0032 42 1 2.8630 6.8821 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:33 Heat of formation + Delta-G solvation = -4.910910 kcal Electronic energy + Delta-G solvation = -24696.556620 eV Core-core repulsion = 20870.457693 eV Total energy + Delta-G solvation = -3826.098928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.23999 -41.40299 -40.09568 -37.74618 -37.47020 -35.53468 -35.34355 -33.55116 -32.62531 -31.30917 -30.11941 -28.48973 -26.83609 -25.20490 -24.52376 -23.54403 -23.46846 -22.08657 -21.76062 -20.10099 -18.98871 -18.68642 -18.59727 -17.84188 -17.38550 -17.23905 -16.78399 -16.51455 -16.37354 -16.26598 -15.85151 -15.38599 -15.17270 -14.77555 -14.60501 -14.56043 -14.29017 -13.77994 -13.63434 -13.59420 -12.98024 -12.84075 -12.72892 -12.65715 -12.50274 -12.07020 -11.87468 -11.73849 -11.65227 -11.64007 -11.52790 -11.34464 -11.15542 -10.96047 -10.76317 -9.78671 -8.63789 -8.29246 -6.34105 -0.68608 0.03300 0.61867 1.06642 1.37816 1.39668 1.50614 1.63356 1.94048 1.97903 2.36461 2.43825 2.73370 3.06916 3.15128 3.39377 3.60153 3.89870 3.94178 4.02925 4.04016 4.09000 4.18490 4.28248 4.36912 4.49604 4.55343 4.76224 4.78868 4.87588 4.95435 4.98114 5.01160 5.02350 5.12842 5.36590 5.37703 5.47413 5.56203 5.64891 5.83199 6.17346 6.27280 6.38331 6.64758 6.74965 6.76803 7.30871 8.87463 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.002049 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.769189 B =13659.068462 C =14857.482504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.347 6.347 4 C 0.562 3.438 5 O -0.522 6.522 6 C -0.016 4.016 7 C 0.014 3.986 8 N -0.309 5.309 9 C -0.130 4.130 10 C 0.365 3.635 11 N -0.709 5.709 12 C 0.130 3.870 13 C -0.104 4.104 14 C -0.010 4.010 15 C -0.535 4.535 16 H 0.031 0.969 17 C 0.001 3.999 18 N -0.953 5.953 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.239 1.239 23 N -0.505 5.505 24 C 0.262 3.738 25 C 0.111 3.889 26 N -0.424 5.424 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.187 0.813 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.321 -17.750 0.029 32.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.262 6.262 4 C 0.406 3.594 5 O -0.411 6.411 6 C -0.153 4.153 7 C -0.131 4.131 8 N 0.022 4.978 9 C -0.260 4.260 10 C 0.145 3.855 11 N -0.339 5.339 12 C 0.007 3.993 13 C -0.142 4.142 14 C -0.048 4.048 15 C -0.573 4.573 16 H 0.049 0.951 17 C -0.196 4.196 18 N -0.594 5.594 19 Si 0.775 3.225 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.162 1.162 23 N -0.219 5.219 24 C 0.075 3.925 25 C -0.136 4.136 26 N -0.147 5.147 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.239 0.761 33 H 0.204 0.796 34 H 0.251 0.749 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -27.425 -17.037 0.041 32.286 hybrid contribution 1.925 -0.804 -0.021 2.086 sum -25.500 -17.842 0.020 31.122 Atomic orbital electron populations 1.21831 0.90419 1.04463 1.03655 1.23430 0.97129 0.78439 1.03122 1.86655 1.22213 1.34198 1.83175 1.19505 0.81186 0.86746 0.71953 1.90859 1.61104 1.41569 1.47604 1.19716 0.90241 0.91068 1.14235 1.22998 0.99186 0.82312 1.08589 1.42070 1.08145 1.06636 1.40916 1.21379 0.93117 0.88107 1.23417 1.17424 0.87171 0.87061 0.93803 1.44659 1.02245 1.07981 1.79021 1.21573 0.78323 0.97121 1.02312 1.21457 0.93909 0.96967 1.01823 1.19454 0.92489 0.95557 0.97265 1.21518 0.91672 0.93742 1.50383 0.95073 1.26068 0.97367 1.01969 0.94155 1.70080 1.02990 1.33649 1.52684 0.85644 0.77964 0.79751 0.79189 1.19243 1.21550 1.16159 1.67740 0.97972 1.38789 1.17440 1.23333 0.99747 0.82609 0.86777 1.22328 0.80251 0.97570 1.13460 1.70611 1.30890 0.96233 1.16947 0.91447 0.87775 0.91445 0.90681 0.90681 0.76102 0.79633 0.74877 0.90712 0.90655 0.92339 0.92344 0.95443 0.95577 0.92598 0.75146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 71.98 0.74 -0.56 16 2 C 0.05 0.74 6.20 71.98 0.45 1.19 16 3 O -0.35 -7.42 10.23 -56.51 -0.58 -8.00 16 4 C 0.56 13.34 7.96 70.27 0.56 13.90 16 5 O -0.52 -13.58 16.67 19.80 0.33 -13.25 16 6 C -0.02 -0.38 7.02 41.14 0.29 -0.09 16 7 C 0.01 0.28 11.54 84.15 0.97 1.25 16 8 N -0.31 -6.62 2.92 -350.08 -1.02 -7.64 16 9 C -0.13 -2.65 10.27 83.29 0.86 -1.80 16 10 C 0.36 7.95 7.60 131.55 1.00 8.95 16 11 N -0.71 -15.50 5.76 -346.19 -1.99 -17.50 16 12 C 0.13 3.05 4.88 86.38 0.42 3.47 16 13 C -0.10 -3.32 5.27 30.60 0.16 -3.16 16 14 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 15 C -0.54 -29.28 9.66 25.60 0.25 -29.03 16 16 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 17 C 0.00 0.06 5.47 84.65 0.46 0.52 16 18 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 19 Si 0.95 42.05 27.47 68.60 1.88 43.93 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 23 N -0.50 -10.38 10.43 -192.39 -2.01 -12.39 16 24 C 0.26 4.48 11.34 85.54 0.97 5.45 16 25 C 0.11 2.41 7.82 134.18 1.05 3.46 16 26 N -0.42 -10.23 11.34 -182.61 -2.07 -12.30 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.22 3.31 8.06 -2.91 -0.02 3.28 16 33 H 0.19 3.17 6.56 -2.91 -0.02 3.15 16 34 H 0.41 8.80 8.60 -92.71 -0.80 8.00 16 35 H 0.07 1.62 7.90 -2.39 -0.02 1.60 16 36 H 0.08 1.63 7.90 -2.38 -0.02 1.61 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 1.09 7.20 -2.39 -0.02 1.08 16 40 H 0.03 1.02 7.57 -2.39 -0.02 1.01 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.23 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -71.59 364.02 3.33 -68.25 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.20 Total: 13.97 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 8.29 Total: 3.27 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -6.80 Total: -108.18 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.25 Total: -21.25 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.93 kcal Total: -71.59 3.33 -68.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.343 kcal (2) G-P(sol) polarization free energy of solvation -71.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds