Wall clock time and date at job start Tue Mar 31 2020 14:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.53003 * 109.46954 * 240.00282 * 2 1 3 5 5 C 1.53004 * 109.46950 * 174.99877 * 4 2 1 6 6 C 1.50697 * 109.46900 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00077 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00145 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99978 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00368 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47331 * 89.99868 * 10 8 6 12 12 H 1.48497 * 109.47336 * 210.00085 * 10 8 6 13 13 H 1.48505 * 109.46781 * 329.99814 * 10 8 6 14 14 N 1.46904 * 109.47303 * 120.00626 * 2 1 3 15 15 C 1.46905 * 110.99526 * 274.99592 * 14 2 1 16 16 C 1.50704 * 109.46704 * 179.97438 * 15 14 2 17 17 C 1.35218 * 126.65432 * 90.35144 * 16 15 14 18 18 C 1.42303 * 103.93403 * 180.09155 * 17 16 15 19 19 C 1.48389 * 126.93763 * 179.85523 * 18 17 16 20 20 C 1.39329 * 120.13803 * 359.72726 * 19 18 17 21 21 C 1.37987 * 119.90854 * 179.97438 * 20 19 18 22 22 C 1.38372 * 120.17393 * 0.02562 * 21 20 19 23 23 C 1.38239 * 120.27219 * 359.97438 * 22 21 20 24 24 C 1.38298 * 120.09002 * 0.02562 * 23 22 21 25 25 F 1.35109 * 120.08516 * 180.27241 * 24 23 22 26 26 N 1.31004 * 106.12279 * 359.59064 * 18 17 16 27 27 O 1.20911 * 111.41625 * 0.26445 * 26 18 17 28 28 H 1.09005 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46685 * 299.99370 * 1 2 3 30 30 H 1.08994 * 109.47255 * 59.99279 * 1 2 3 31 31 H 1.08997 * 109.47099 * 294.99763 * 4 2 1 32 32 H 1.09005 * 109.47047 * 55.00185 * 4 2 1 33 33 H 1.08997 * 109.47127 * 299.99869 * 5 4 2 34 34 H 1.09005 * 109.46994 * 60.00275 * 5 4 2 35 35 H 0.96995 * 120.00011 * 180.02562 * 9 8 6 36 36 H 1.00895 * 111.00154 * 151.04396 * 14 2 1 37 37 H 1.08999 * 109.46929 * 60.00200 * 15 14 2 38 38 H 1.08992 * 109.47266 * 299.99501 * 15 14 2 39 39 H 1.08002 * 128.03190 * 359.94303 * 17 16 15 40 40 H 1.08001 * 120.04581 * 0.02562 * 20 19 18 41 41 H 1.07999 * 119.91175 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.86216 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.94911 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0670 -1.3230 -2.5446 7 1 3.3685 -1.8028 -3.2141 8 6 5.4183 -1.3600 -2.8160 9 7 6.2691 -0.7762 -2.0004 10 14 6.0409 -2.2392 -4.3421 11 1 6.0914 -1.2839 -5.4778 12 1 7.4019 -2.7744 -4.0845 13 1 5.1241 -3.3584 -4.6771 14 7 2.0197 -0.6926 1.1994 15 6 2.0826 0.2225 2.3469 16 6 2.5875 -0.5221 3.5560 17 6 3.8764 -0.6537 3.9428 18 6 3.8003 -1.4394 5.1268 19 6 4.9335 -1.8907 5.9719 20 6 6.2406 -1.5515 5.6287 21 6 7.2907 -1.9733 6.4182 22 6 7.0491 -2.7327 7.5495 23 6 5.7552 -3.0734 7.8968 24 6 4.6944 -2.6566 7.1135 25 9 3.4294 -2.9851 7.4560 26 7 2.5275 -1.6789 5.3233 27 8 1.8454 -1.1765 4.4605 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.7516 -1.7714 -1.2057 32 1 1.6053 -0.2616 -2.1370 33 1 3.8531 0.4370 -1.3574 34 1 3.9994 -1.0728 -0.4261 35 1 7.2196 -0.8019 -2.1915 36 1 2.9173 -1.1206 1.0286 37 1 1.0872 0.6162 2.5525 38 1 2.7590 1.0460 2.1182 39 1 4.7590 -0.2570 3.4630 40 1 6.4315 -0.9586 4.7464 41 1 8.3039 -1.7108 6.1521 42 1 7.8749 -3.0605 8.1636 43 1 5.5726 -3.6660 8.7810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:08 Heat of formation + Delta-G solvation = 27.003149 kcal Electronic energy + Delta-G solvation = -25431.491083 eV Core-core repulsion = 21586.856091 eV Total energy + Delta-G solvation = -3844.634992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.98579 -44.84483 -39.18384 -37.46502 -34.58688 -33.84911 -32.67099 -31.06199 -30.58980 -30.22216 -29.10849 -25.79562 -24.71473 -24.46003 -23.12033 -22.28846 -21.45938 -20.38793 -19.65777 -17.82705 -17.54054 -17.31995 -16.51802 -16.27049 -16.10572 -15.71800 -15.35983 -15.03427 -14.69721 -14.54936 -14.21949 -13.81076 -13.63529 -13.30330 -13.00173 -12.78800 -12.61927 -12.42882 -12.19570 -12.09070 -11.78933 -11.52440 -11.48017 -11.20524 -11.09273 -10.94540 -10.94184 -10.53232 -10.40099 -9.84172 -9.49944 -9.33534 -9.17393 -9.09112 -8.70647 -8.41507 -8.18914 -6.06323 -4.07978 0.50698 0.90145 1.53702 2.34966 3.08504 3.28659 3.35279 3.39038 3.42296 3.80337 3.93799 4.22935 4.41859 4.49672 4.55679 4.73228 4.91724 4.97312 5.04293 5.15281 5.24641 5.30371 5.41270 5.44306 5.57720 5.65380 5.68193 5.77777 5.81169 5.82951 5.95306 6.02514 6.10242 6.10400 6.27962 6.43452 6.47728 6.54231 6.82724 6.99711 7.28264 7.52780 7.69128 7.73842 7.92793 8.24575 8.36603 8.98350 9.56612 11.04913 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003086 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.008660 B = 9072.148814 C =11133.938539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.084 3.916 3 H 0.043 0.957 4 C -0.116 4.116 5 C 0.020 3.980 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.273 1.273 14 N -0.683 5.683 15 C 0.135 3.865 16 C -0.009 4.009 17 C -0.213 4.213 18 C 0.045 3.955 19 C -0.050 4.050 20 C -0.065 4.065 21 C -0.129 4.129 22 C -0.084 4.084 23 C -0.158 4.158 24 C 0.121 3.879 25 F -0.124 7.124 26 N -0.347 5.347 27 O 0.117 5.883 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.357 0.643 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.176 0.824 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 1.355 18.299 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.061 0.939 4 C -0.154 4.154 5 C -0.017 4.017 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.319 5.319 15 C 0.005 3.995 16 C -0.073 4.073 17 C -0.236 4.236 18 C -0.111 4.111 19 C -0.052 4.052 20 C -0.085 4.085 21 C -0.147 4.147 22 C -0.102 4.102 23 C -0.177 4.177 24 C 0.100 3.900 25 F -0.102 7.102 26 N -0.047 5.047 27 O 0.045 5.955 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.180 0.820 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.193 0.807 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.432 0.447 19.438 19.595 hybrid contribution 1.697 0.288 -1.463 2.259 sum -0.735 0.735 17.976 18.006 Atomic orbital electron populations 1.21817 0.95401 1.02027 1.00423 1.21641 0.94754 0.96180 0.89908 0.93940 1.21853 0.99710 0.99625 0.94188 1.19134 0.88725 0.96879 0.96953 1.21229 0.91964 1.34300 1.08249 0.92643 1.25011 0.97075 0.95580 0.96711 1.69946 1.02365 1.44259 1.36983 0.86602 0.78165 0.79995 0.83319 1.20688 1.21229 1.19832 1.60632 1.35315 1.31973 1.04021 1.20420 1.01875 0.92272 0.84925 1.24361 0.90317 0.97961 0.94618 1.22470 0.98488 1.05025 0.97589 1.21680 0.91265 1.01350 0.96779 1.17803 0.91896 1.01201 0.94258 1.21129 0.89957 0.97891 0.99488 1.21178 0.99520 0.98896 0.95152 1.21135 0.95988 0.96489 0.96631 1.21112 0.91986 1.03388 1.01173 1.17757 0.79837 0.97821 0.94585 1.91567 1.36885 1.90305 1.91465 1.74268 1.04343 1.15867 1.10201 1.84817 1.34257 1.49645 1.26742 0.92182 0.93581 0.92765 0.92303 0.92400 0.96879 0.96730 0.93039 0.82039 0.88871 0.91458 0.80670 0.84170 0.84575 0.84697 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.41 37.16 0.35 -1.52 16 2 C 0.08 1.33 2.65 -67.71 -0.18 1.15 16 3 H 0.04 0.67 7.80 -51.93 -0.41 0.26 16 4 C -0.12 -2.25 4.74 -26.73 -0.13 -2.38 16 5 C 0.02 0.49 4.80 -27.88 -0.13 0.35 16 6 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 7 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 10 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 N -0.68 -10.66 6.30 -107.99 -0.68 -11.34 16 15 C 0.14 1.74 6.04 -4.97 -0.03 1.71 16 16 C -0.01 -0.13 6.98 -35.38 -0.25 -0.37 16 17 C -0.21 -2.90 10.45 -39.10 -0.41 -3.31 16 18 C 0.05 0.67 7.05 -82.48 -0.58 0.09 16 19 C -0.05 -0.65 5.88 -104.83 -0.62 -1.27 16 20 C -0.07 -0.68 9.60 -39.27 -0.38 -1.06 16 21 C -0.13 -1.08 10.03 -39.62 -0.40 -1.48 16 22 C -0.08 -0.66 10.04 -39.53 -0.40 -1.05 16 23 C -0.16 -1.51 10.02 -39.56 -0.40 -1.91 16 24 C 0.12 1.55 7.28 -39.08 -0.28 1.26 16 25 F -0.12 -1.83 15.86 2.25 0.04 -1.80 16 26 N -0.35 -5.70 10.84 33.32 0.36 -5.34 16 27 O 0.12 1.81 11.18 17.11 0.19 2.00 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.55 7.45 -51.93 -0.39 0.16 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.01 0.37 6.43 -51.93 -0.33 0.03 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.36 6.27 6.46 -39.29 -0.25 6.02 16 37 H 0.09 1.06 7.44 -51.93 -0.39 0.67 16 38 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 39 H 0.18 2.03 7.58 -52.49 -0.40 1.63 16 40 H 0.14 1.27 7.23 -52.49 -0.38 0.89 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -31.20 367.24 -8.96 -40.16 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.89 Total: 2.55 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -4.24 Total: -22.84 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.42 Total: -41.86 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.19 Total: 2.00 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.20 -8.96 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.162 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds