Wall clock time and date at job start Tue Mar 31 2020 14:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.53003 * 109.46954 * 240.00282 * 2 1 3 5 5 C 1.53004 * 109.46950 * 174.99877 * 4 2 1 6 6 C 1.50697 * 109.46900 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00077 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00145 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99978 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00368 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47331 * 89.99868 * 10 8 6 12 12 H 1.48497 * 109.47336 * 210.00085 * 10 8 6 13 13 H 1.48505 * 109.46781 * 329.99814 * 10 8 6 14 14 N 1.46904 * 109.47303 * 120.00626 * 2 1 3 15 15 C 1.46905 * 110.99526 * 274.99592 * 14 2 1 16 16 C 1.50704 * 109.46704 * 179.97438 * 15 14 2 17 17 C 1.35218 * 126.65432 * 90.35144 * 16 15 14 18 18 C 1.42303 * 103.93403 * 180.09155 * 17 16 15 19 19 C 1.48389 * 126.93763 * 179.85523 * 18 17 16 20 20 C 1.39329 * 120.13803 * 359.72726 * 19 18 17 21 21 C 1.37987 * 119.90854 * 179.97438 * 20 19 18 22 22 C 1.38372 * 120.17393 * 0.02562 * 21 20 19 23 23 C 1.38239 * 120.27219 * 359.97438 * 22 21 20 24 24 C 1.38298 * 120.09002 * 0.02562 * 23 22 21 25 25 F 1.35109 * 120.08516 * 180.27241 * 24 23 22 26 26 N 1.31004 * 106.12279 * 359.59064 * 18 17 16 27 27 O 1.20911 * 111.41625 * 0.26445 * 26 18 17 28 28 H 1.09005 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46685 * 299.99370 * 1 2 3 30 30 H 1.08994 * 109.47255 * 59.99279 * 1 2 3 31 31 H 1.08997 * 109.47099 * 294.99763 * 4 2 1 32 32 H 1.09005 * 109.47047 * 55.00185 * 4 2 1 33 33 H 1.08997 * 109.47127 * 299.99869 * 5 4 2 34 34 H 1.09005 * 109.46994 * 60.00275 * 5 4 2 35 35 H 0.96995 * 120.00011 * 180.02562 * 9 8 6 36 36 H 1.00895 * 111.00154 * 151.04396 * 14 2 1 37 37 H 1.08999 * 109.46929 * 60.00200 * 15 14 2 38 38 H 1.08992 * 109.47266 * 299.99501 * 15 14 2 39 39 H 1.08002 * 128.03190 * 359.94303 * 17 16 15 40 40 H 1.08001 * 120.04581 * 0.02562 * 20 19 18 41 41 H 1.07999 * 119.91175 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.86216 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.94911 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0670 -1.3230 -2.5446 7 1 3.3685 -1.8028 -3.2141 8 6 5.4183 -1.3600 -2.8160 9 7 6.2691 -0.7762 -2.0004 10 14 6.0409 -2.2392 -4.3421 11 1 6.0914 -1.2839 -5.4778 12 1 7.4019 -2.7744 -4.0845 13 1 5.1241 -3.3584 -4.6771 14 7 2.0197 -0.6926 1.1994 15 6 2.0826 0.2225 2.3469 16 6 2.5875 -0.5221 3.5560 17 6 3.8764 -0.6537 3.9428 18 6 3.8003 -1.4394 5.1268 19 6 4.9335 -1.8907 5.9719 20 6 6.2406 -1.5515 5.6287 21 6 7.2907 -1.9733 6.4182 22 6 7.0491 -2.7327 7.5495 23 6 5.7552 -3.0734 7.8968 24 6 4.6944 -2.6566 7.1135 25 9 3.4294 -2.9851 7.4560 26 7 2.5275 -1.6789 5.3233 27 8 1.8454 -1.1765 4.4605 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.7516 -1.7714 -1.2057 32 1 1.6053 -0.2616 -2.1370 33 1 3.8531 0.4370 -1.3574 34 1 3.9994 -1.0728 -0.4261 35 1 7.2196 -0.8019 -2.1915 36 1 2.9173 -1.1206 1.0286 37 1 1.0872 0.6162 2.5525 38 1 2.7590 1.0460 2.1182 39 1 4.7590 -0.2570 3.4630 40 1 6.4315 -0.9586 4.7464 41 1 8.3039 -1.7108 6.1521 42 1 7.8749 -3.0605 8.1636 43 1 5.5726 -3.6660 8.7810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:07 Heat of formation + Delta-G solvation = 9.876244 kcal Electronic energy + Delta-G solvation = -25432.233761 eV Core-core repulsion = 21586.856091 eV Total energy + Delta-G solvation = -3845.377670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.97742 -45.97536 -39.95294 -38.77572 -35.69824 -35.41388 -34.26987 -31.99894 -31.83881 -31.20648 -30.49317 -27.24899 -26.24412 -25.40008 -24.03965 -23.21629 -23.16096 -21.38498 -21.05500 -18.85105 -18.70503 -18.46994 -18.22791 -17.32685 -16.96430 -16.71861 -16.64613 -16.50218 -16.18918 -15.63263 -15.25796 -14.77623 -14.59068 -14.45926 -14.29119 -14.23013 -14.06444 -13.63494 -13.34058 -13.14980 -13.02450 -12.84501 -12.82454 -12.55307 -12.46874 -12.33221 -12.05829 -11.91986 -11.87783 -11.56735 -11.28844 -10.96090 -10.58681 -10.51845 -9.96043 -9.60182 -9.41321 -8.18679 -6.27610 -0.36330 0.13735 0.44748 1.35565 1.40689 1.41332 1.52030 2.01404 2.41990 2.62799 2.84718 3.06326 3.14622 3.24136 3.39389 3.78541 3.92872 3.97737 4.04980 4.13582 4.21471 4.28875 4.32716 4.40426 4.51240 4.51909 4.67662 4.74487 4.82258 4.94451 5.00693 5.01951 5.07228 5.08261 5.12146 5.24508 5.27614 5.36481 5.49309 5.56637 5.72240 5.81217 5.87231 6.12229 6.28161 6.32331 6.88196 7.14310 7.40967 8.92315 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003086 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.008660 B = 9072.148814 C =11133.938539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.091 3.909 3 H 0.046 0.954 4 C -0.105 4.105 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.927 5.927 10 Si 0.956 3.044 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.268 1.268 14 N -0.691 5.691 15 C 0.139 3.861 16 C -0.011 4.011 17 C -0.217 4.217 18 C 0.040 3.960 19 C -0.082 4.082 20 C -0.072 4.072 21 C -0.123 4.123 22 C -0.070 4.070 23 C -0.156 4.156 24 C 0.087 3.913 25 F -0.145 7.145 26 N -0.379 5.379 27 O 0.103 5.897 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.061 0.939 33 H -0.009 1.009 34 H 0.000 1.000 35 H 0.263 0.737 36 H 0.343 0.657 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.192 0.808 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.175 0.825 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 1.395 18.444 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.018 4.018 3 H 0.064 0.936 4 C -0.143 4.143 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.567 5.567 10 Si 0.782 3.218 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.192 1.192 14 N -0.326 5.326 15 C 0.009 3.991 16 C -0.075 4.075 17 C -0.239 4.239 18 C -0.115 4.115 19 C -0.084 4.084 20 C -0.092 4.092 21 C -0.141 4.141 22 C -0.089 4.089 23 C -0.175 4.175 24 C 0.067 3.933 25 F -0.124 7.124 26 N -0.081 5.081 27 O 0.035 5.965 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.010 0.990 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.163 0.837 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.209 0.791 40 H 0.166 0.834 41 H 0.186 0.814 42 H 0.193 0.807 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.249 0.501 19.575 19.621 hybrid contribution 1.431 0.272 -1.452 2.057 sum 0.182 0.773 18.123 18.140 Atomic orbital electron populations 1.21760 0.93107 1.02121 1.02012 1.21558 0.96402 0.95590 0.88277 0.93560 1.21676 0.96362 0.99745 0.96469 1.19007 0.91922 0.94801 0.95256 1.21689 0.92457 1.34593 1.09374 0.92733 1.25852 0.97396 0.96334 0.99763 1.70054 1.02673 1.45342 1.38653 0.85575 0.77599 0.78987 0.79670 1.19873 1.20767 1.19218 1.60678 1.34397 1.32848 1.04648 1.20518 1.03393 0.91766 0.83377 1.24604 0.90451 0.97752 0.94652 1.22730 0.99040 1.04808 0.97294 1.22154 0.91414 1.00784 0.97192 1.18058 0.92429 1.02974 0.94943 1.21369 0.89468 0.98084 1.00264 1.21616 1.00278 0.97647 0.94511 1.21634 0.96179 0.94705 0.96333 1.21445 0.91858 1.02974 1.01222 1.18211 0.79898 0.99416 0.95768 1.91502 1.38451 1.90715 1.91724 1.74247 1.05299 1.17381 1.11185 1.84774 1.34596 1.50097 1.27074 0.92828 0.91625 0.91577 0.93121 0.92064 0.99035 0.98154 0.92854 0.83684 0.86850 0.90182 0.79060 0.83373 0.81429 0.80749 0.82359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.41 71.98 0.68 -2.63 16 2 C 0.09 2.79 2.65 44.92 0.12 2.90 16 3 H 0.05 1.40 7.80 -2.39 -0.02 1.38 16 4 C -0.10 -4.06 4.74 30.60 0.15 -3.92 16 5 C 0.03 1.35 4.80 29.85 0.14 1.49 16 6 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 7 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 8 C 0.00 0.26 5.46 84.65 0.46 0.73 16 9 N -0.93 -54.05 13.29 21.45 0.28 -53.77 16 10 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 N -0.69 -21.39 6.30 -495.56 -3.12 -24.51 16 15 C 0.14 3.47 6.04 85.56 0.52 3.99 16 16 C -0.01 -0.31 6.98 24.99 0.17 -0.14 16 17 C -0.22 -6.03 10.45 22.58 0.24 -5.79 16 18 C 0.04 1.25 7.05 42.98 0.30 1.56 16 19 C -0.08 -2.21 5.88 -20.00 -0.12 -2.33 16 20 C -0.07 -1.45 9.60 22.47 0.22 -1.24 16 21 C -0.12 -1.70 10.03 22.24 0.22 -1.48 16 22 C -0.07 -0.87 10.04 22.30 0.22 -0.65 16 23 C -0.16 -2.77 10.02 22.28 0.22 -2.54 16 24 C 0.09 2.29 7.28 22.60 0.16 2.46 16 25 F -0.15 -4.56 15.86 44.97 0.71 -3.84 16 26 N -0.38 -13.10 10.84 -49.45 -0.54 -13.63 16 27 O 0.10 3.33 11.18 71.41 0.80 4.13 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.06 1.40 7.45 -2.39 -0.02 1.38 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H 0.00 0.01 6.43 -2.38 -0.02 0.00 16 35 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.34 12.30 6.46 -89.70 -0.58 11.72 16 37 H 0.11 2.38 7.44 -2.39 -0.02 2.36 16 38 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 39 H 0.19 4.47 7.58 -2.91 -0.02 4.45 16 40 H 0.15 2.59 7.23 -2.91 -0.02 2.57 16 41 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -69.37 367.24 4.56 -64.82 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.45 Total: 18.74 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 3.94 Total: -37.43 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -3.37 Total: -91.92 kcal Atomic # 8 Polarization: 3.33 SS G_CDS: 0.80 Total: 4.13 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.71 Total: -3.84 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -69.37 4.56 -64.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.691 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds