Wall clock time and date at job start Tue Mar 31 2020 14:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46735 * 2 1 4 4 C 1.53001 * 109.47050 * 119.99455 * 2 1 3 5 5 C 1.53001 * 109.47110 * 183.09751 * 4 2 1 6 6 C 1.50687 * 109.47183 * 175.06027 * 5 4 2 7 7 H 1.08001 * 120.00715 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99888 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00056 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99812 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47318 * 60.00299 * 10 8 6 12 12 H 1.48497 * 109.47079 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47291 * 300.00020 * 10 8 6 14 14 N 1.46896 * 109.47028 * 239.99845 * 2 1 3 15 15 C 1.46985 * 111.00219 * 63.65714 * 14 2 1 16 16 C 1.53440 * 109.65150 * 165.42858 * 15 14 2 17 17 N 1.46346 * 108.21445 * 49.43007 * 16 15 14 18 18 N 1.39495 * 129.20497 * 163.64774 * 17 16 15 19 19 C 1.31065 * 106.53450 * 180.20303 * 18 17 16 20 20 C 1.50695 * 125.48656 * 179.91446 * 19 18 17 21 21 F 1.39901 * 109.47212 * 15.02122 * 20 19 18 22 22 F 1.39903 * 109.47182 * 135.02109 * 20 19 18 23 23 F 1.39899 * 109.46994 * 255.02029 * 20 19 18 24 24 N 1.33546 * 109.02321 * 359.94200 * 19 18 17 25 25 C 1.30129 * 109.72007 * 359.96159 * 24 19 18 26 26 C 1.47349 * 111.00274 * 299.43713 * 14 2 1 27 27 H 1.08997 * 109.47625 * 65.87712 * 1 2 3 28 28 H 1.08999 * 109.47224 * 185.87718 * 1 2 3 29 29 H 1.09006 * 109.47365 * 305.87344 * 1 2 3 30 30 H 1.09000 * 109.47541 * 303.10039 * 4 2 1 31 31 H 1.09004 * 109.46481 * 63.10136 * 4 2 1 32 32 H 1.09004 * 109.47244 * 295.06279 * 5 4 2 33 33 H 1.08997 * 109.47064 * 55.05678 * 5 4 2 34 34 H 0.97000 * 119.99858 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.44111 * 285.48782 * 15 14 2 36 36 H 1.08999 * 109.44217 * 45.40767 * 15 14 2 37 37 H 1.08997 * 109.72256 * 169.10840 * 16 15 14 38 38 H 1.09006 * 109.71678 * 289.71136 * 16 15 14 39 39 H 1.08994 * 109.73769 * 293.81714 * 26 14 2 40 40 H 1.09001 * 109.73450 * 54.51550 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5680 -0.6540 1.2889 6 6 4.0641 -1.2568 2.5778 7 1 3.3601 -1.6491 3.2967 8 6 5.4169 -1.3076 2.8393 9 7 6.2743 -0.8305 1.9638 10 14 6.0318 -2.0543 4.4374 11 1 5.5968 -3.4717 4.5212 12 1 7.5148 -1.9881 4.4763 13 1 5.4727 -1.2961 5.5854 14 7 2.0196 -0.6925 -1.1994 15 6 1.6212 0.0226 -2.4202 16 6 2.4333 -0.4998 -3.6126 17 7 2.3656 -1.9617 -3.6069 18 7 2.6694 -2.8624 -4.6278 19 6 2.4482 -4.0610 -4.1458 20 6 2.6391 -5.3543 -4.8954 21 9 3.4008 -5.1189 -6.0450 22 9 3.3027 -6.2743 -4.0766 23 9 1.3910 -5.8703 -5.2603 24 7 2.0259 -3.9515 -2.8836 25 6 1.9729 -2.6959 -2.5457 26 6 1.5583 -2.0916 -1.2267 27 1 -0.3634 0.4200 -0.9379 28 1 -0.3633 -1.0222 0.1052 29 1 -0.3634 0.6022 0.8328 30 1 1.6320 -0.2404 2.1384 31 1 1.7227 -1.7636 1.2219 32 1 3.9781 -1.2103 0.4460 33 1 3.8877 0.3862 1.2276 34 1 7.2260 -0.8659 2.1479 35 1 0.5593 -0.1396 -2.6054 36 1 1.8085 1.0889 -2.2935 37 1 2.0115 -0.1159 -4.5414 38 1 3.4709 -0.1788 -3.5197 39 1 2.0159 -2.6462 -0.4076 40 1 0.4728 -2.1232 -1.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:55 Heat of formation + Delta-G solvation = -54.367629 kcal Electronic energy + Delta-G solvation = -27266.484524 eV Core-core repulsion = 22896.384252 eV Total energy + Delta-G solvation = -4370.100272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.30381 -47.84579 -47.78762 -42.71020 -39.03807 -35.27978 -33.37311 -32.60627 -31.36660 -29.95918 -29.29538 -27.40564 -25.66878 -25.11247 -23.56138 -21.92119 -21.42820 -20.36697 -19.23584 -18.72788 -18.40907 -18.10239 -16.98826 -16.69865 -16.21965 -15.78327 -15.15233 -14.66970 -14.61755 -14.59437 -14.44630 -14.21562 -14.09010 -13.93704 -13.92264 -13.57086 -13.11238 -13.00891 -12.88001 -12.52621 -12.48782 -12.15389 -11.89062 -11.66254 -11.40977 -11.24868 -10.86838 -10.53678 -10.46301 -10.42189 -10.10698 -9.84785 -9.80368 -9.34938 -9.02558 -8.40010 -8.26131 -5.96453 -3.98758 1.13562 1.66082 2.28967 2.38850 3.21561 3.34757 3.38925 3.39886 3.41742 3.81342 4.10089 4.18818 4.24177 4.48000 4.62620 4.75655 5.06295 5.07863 5.08788 5.23304 5.28559 5.39248 5.40344 5.44045 5.60407 5.62772 5.88044 5.89734 5.99426 6.07976 6.37214 6.42904 6.56617 6.87941 6.98526 7.13053 7.63133 7.73648 7.90970 8.07748 8.45742 9.09379 9.65228 11.14315 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003750 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.261482 B = 7464.214970 C = 8846.762617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.086 3.914 3 H 0.090 0.910 4 C -0.109 4.109 5 C 0.031 3.969 6 C -0.525 4.525 7 H 0.052 0.948 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.887 3.113 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.522 5.522 15 C 0.034 3.966 16 C 0.130 3.870 17 N -0.353 5.353 18 N -0.256 5.256 19 C 0.128 3.872 20 C 0.579 3.421 21 F -0.161 7.161 22 F -0.155 7.155 23 F -0.163 7.163 24 N -0.500 5.500 25 C 0.304 3.696 26 C 0.127 3.873 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.012 0.988 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 0.011 -13.566 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.021 4.021 3 H 0.108 0.892 4 C -0.146 4.146 5 C -0.006 4.006 6 C -0.563 4.563 7 H 0.070 0.930 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.715 3.285 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 N -0.246 5.246 15 C -0.096 4.096 16 C 0.008 3.992 17 N -0.144 5.144 18 N -0.087 5.087 19 C -0.156 4.156 20 C 0.522 3.478 21 F -0.142 7.142 22 F -0.136 7.136 23 F -0.145 7.145 24 N -0.228 5.228 25 C 0.028 3.972 26 C -0.003 4.003 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.495 -0.022 -14.134 18.219 hybrid contribution -0.289 -0.357 0.806 0.928 sum -11.784 -0.379 -13.328 17.794 Atomic orbital electron populations 1.22562 0.98128 1.02289 1.01897 1.21993 0.91500 0.98927 0.89703 0.89154 1.21828 1.01174 0.98395 0.93227 1.18984 0.87604 0.97163 0.96853 1.21268 0.91678 1.39470 1.03883 0.93005 1.24982 0.97114 0.95558 0.96540 1.69951 1.02007 1.46294 1.34988 0.86742 0.77638 0.79875 0.84229 1.20262 1.21371 1.20350 1.62341 1.59720 1.00401 1.02178 1.22588 0.97121 1.00556 0.89305 1.22291 1.04264 0.72353 1.00258 1.50368 1.47392 1.08386 1.08271 1.77845 1.21332 0.97952 1.11555 1.23711 1.05772 0.93364 0.92727 1.16236 0.74526 0.80767 0.76301 1.93252 1.75922 1.94446 1.50560 1.93279 1.80609 1.67396 1.72359 1.93248 1.41758 1.87685 1.91785 1.69922 1.23353 1.18239 1.11253 1.24374 0.94506 0.85999 0.92341 1.21037 0.99668 0.89749 0.89833 0.93132 0.92351 0.91455 0.92354 0.93108 0.95506 0.96950 0.93072 0.93206 0.87076 0.87951 0.87569 0.84914 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 8.50 37.16 0.32 -1.61 16 2 C 0.09 1.13 2.36 -67.71 -0.16 0.97 16 3 H 0.09 1.20 8.02 -51.93 -0.42 0.78 16 4 C -0.11 -1.91 4.36 -26.73 -0.12 -2.02 16 5 C 0.03 0.74 4.78 -27.89 -0.13 0.61 16 6 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 7 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 10 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.52 -6.88 4.12 -227.23 -0.94 -7.82 16 15 C 0.03 0.32 4.82 -3.55 -0.02 0.30 16 16 C 0.13 1.32 7.54 -3.90 -0.03 1.29 16 17 N -0.35 -5.02 4.07 -58.20 -0.24 -5.26 16 18 N -0.26 -4.00 12.55 32.53 0.41 -3.59 16 19 C 0.13 2.04 7.42 -156.29 -1.16 0.88 16 20 C 0.58 8.09 3.57 36.00 0.13 8.22 16 21 F -0.16 -2.14 17.15 2.25 0.04 -2.10 16 22 F -0.16 -2.24 17.30 2.25 0.04 -2.20 16 23 F -0.16 -2.14 17.30 2.25 0.04 -2.10 16 24 N -0.50 -8.40 11.18 -8.00 -0.09 -8.49 16 25 C 0.30 4.65 7.83 -155.77 -1.22 3.43 16 26 C 0.13 1.72 5.03 -4.64 -0.02 1.70 16 27 H 0.05 0.43 6.55 -51.93 -0.34 0.09 16 28 H 0.06 0.59 6.62 -51.93 -0.34 0.25 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 32 H 0.03 0.70 7.84 -51.93 -0.41 0.29 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.05 0.41 6.99 -51.93 -0.36 0.05 16 36 H 0.11 0.84 7.93 -51.93 -0.41 0.43 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.13 2.07 6.60 -51.93 -0.34 1.73 16 40 H 0.08 0.89 6.20 -51.93 -0.32 0.57 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -31.92 338.49 -7.68 -39.60 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.93 Total: -4.49 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.83 Total: 0.72 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.12 Total: -51.00 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.12 Total: -6.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.92 -7.68 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.772 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds