Wall clock time and date at job start Tue Mar 31 2020 14:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46735 * 2 1 4 4 C 1.53001 * 109.47050 * 119.99455 * 2 1 3 5 5 C 1.53001 * 109.47110 * 183.09751 * 4 2 1 6 6 C 1.50687 * 109.47183 * 175.06027 * 5 4 2 7 7 H 1.08001 * 120.00715 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99888 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00056 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99812 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47318 * 60.00299 * 10 8 6 12 12 H 1.48497 * 109.47079 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47291 * 300.00020 * 10 8 6 14 14 N 1.46896 * 109.47028 * 239.99845 * 2 1 3 15 15 C 1.46985 * 111.00219 * 63.65714 * 14 2 1 16 16 C 1.53440 * 109.65150 * 165.42858 * 15 14 2 17 17 N 1.46346 * 108.21445 * 49.43007 * 16 15 14 18 18 N 1.39495 * 129.20497 * 163.64774 * 17 16 15 19 19 C 1.31065 * 106.53450 * 180.20303 * 18 17 16 20 20 C 1.50695 * 125.48656 * 179.91446 * 19 18 17 21 21 F 1.39901 * 109.47212 * 15.02122 * 20 19 18 22 22 F 1.39903 * 109.47182 * 135.02109 * 20 19 18 23 23 F 1.39899 * 109.46994 * 255.02029 * 20 19 18 24 24 N 1.33546 * 109.02321 * 359.94200 * 19 18 17 25 25 C 1.30129 * 109.72007 * 359.96159 * 24 19 18 26 26 C 1.47349 * 111.00274 * 299.43713 * 14 2 1 27 27 H 1.08997 * 109.47625 * 65.87712 * 1 2 3 28 28 H 1.08999 * 109.47224 * 185.87718 * 1 2 3 29 29 H 1.09006 * 109.47365 * 305.87344 * 1 2 3 30 30 H 1.09000 * 109.47541 * 303.10039 * 4 2 1 31 31 H 1.09004 * 109.46481 * 63.10136 * 4 2 1 32 32 H 1.09004 * 109.47244 * 295.06279 * 5 4 2 33 33 H 1.08997 * 109.47064 * 55.05678 * 5 4 2 34 34 H 0.97000 * 119.99858 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.44111 * 285.48782 * 15 14 2 36 36 H 1.08999 * 109.44217 * 45.40767 * 15 14 2 37 37 H 1.08997 * 109.72256 * 169.10840 * 16 15 14 38 38 H 1.09006 * 109.71678 * 289.71136 * 16 15 14 39 39 H 1.08994 * 109.73769 * 293.81714 * 26 14 2 40 40 H 1.09001 * 109.73450 * 54.51550 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5680 -0.6540 1.2889 6 6 4.0641 -1.2568 2.5778 7 1 3.3601 -1.6491 3.2967 8 6 5.4169 -1.3076 2.8393 9 7 6.2743 -0.8305 1.9638 10 14 6.0318 -2.0543 4.4374 11 1 5.5968 -3.4717 4.5212 12 1 7.5148 -1.9881 4.4763 13 1 5.4727 -1.2961 5.5854 14 7 2.0196 -0.6925 -1.1994 15 6 1.6212 0.0226 -2.4202 16 6 2.4333 -0.4998 -3.6126 17 7 2.3656 -1.9617 -3.6069 18 7 2.6694 -2.8624 -4.6278 19 6 2.4482 -4.0610 -4.1458 20 6 2.6391 -5.3543 -4.8954 21 9 3.4008 -5.1189 -6.0450 22 9 3.3027 -6.2743 -4.0766 23 9 1.3910 -5.8703 -5.2603 24 7 2.0259 -3.9515 -2.8836 25 6 1.9729 -2.6959 -2.5457 26 6 1.5583 -2.0916 -1.2267 27 1 -0.3634 0.4200 -0.9379 28 1 -0.3633 -1.0222 0.1052 29 1 -0.3634 0.6022 0.8328 30 1 1.6320 -0.2404 2.1384 31 1 1.7227 -1.7636 1.2219 32 1 3.9781 -1.2103 0.4460 33 1 3.8877 0.3862 1.2276 34 1 7.2260 -0.8659 2.1479 35 1 0.5593 -0.1396 -2.6054 36 1 1.8085 1.0889 -2.2935 37 1 2.0115 -0.1159 -4.5414 38 1 3.4709 -0.1788 -3.5197 39 1 2.0159 -2.6462 -0.4076 40 1 0.4728 -2.1232 -1.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:54 Heat of formation + Delta-G solvation = -74.376513 kcal Electronic energy + Delta-G solvation = -27267.352174 eV Core-core repulsion = 22896.384252 eV Total energy + Delta-G solvation = -4370.967922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.40685 -48.92660 -48.90736 -43.83794 -40.06536 -36.46437 -35.11762 -33.92902 -32.70705 -31.15634 -30.53325 -28.47981 -27.09569 -26.41357 -24.65317 -23.21088 -22.84710 -21.63065 -20.30556 -19.83306 -19.50589 -19.22350 -18.33599 -18.01863 -17.72202 -16.86600 -16.52672 -16.10677 -15.75364 -15.70849 -15.57164 -15.31346 -15.08694 -15.03956 -15.02666 -14.74832 -14.54031 -14.15324 -14.03038 -13.88645 -13.59619 -13.35078 -13.11701 -13.06923 -12.78332 -12.55517 -12.40112 -12.26180 -11.81552 -11.64409 -11.43641 -11.30580 -11.15455 -10.95939 -10.85981 -10.46472 -9.30157 -8.12965 -6.22045 -0.01793 0.61381 1.11286 1.31183 1.41132 1.43201 1.50381 2.11377 2.33882 2.44535 2.78524 3.07769 3.08475 3.20894 3.34946 3.69258 3.99781 4.03944 4.12111 4.24479 4.29697 4.43278 4.47433 4.49190 4.62798 4.70104 4.79373 4.82710 4.97251 5.02393 5.18395 5.33708 5.37335 5.47238 5.61180 5.87208 5.90826 6.03363 6.08791 6.36394 6.47750 6.99171 7.46605 8.97590 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003750 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.261482 B = 7464.214970 C = 8846.762617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.096 3.904 3 H 0.092 0.908 4 C -0.099 4.099 5 C 0.041 3.959 6 C -0.542 4.542 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.952 3.048 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.265 1.265 14 N -0.549 5.549 15 C 0.038 3.962 16 C 0.121 3.879 17 N -0.350 5.350 18 N -0.267 5.267 19 C 0.114 3.886 20 C 0.586 3.414 21 F -0.156 7.156 22 F -0.160 7.160 23 F -0.157 7.157 24 N -0.527 5.527 25 C 0.295 3.705 26 C 0.134 3.866 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.052 0.948 32 H -0.004 1.004 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 0.830 -13.593 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.011 4.011 3 H 0.110 0.890 4 C -0.137 4.137 5 C 0.004 3.996 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.573 5.573 10 Si 0.777 3.223 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.190 1.190 14 N -0.274 5.274 15 C -0.091 4.091 16 C 0.001 3.999 17 N -0.141 5.141 18 N -0.099 5.099 19 C -0.169 4.169 20 C 0.528 3.472 21 F -0.138 7.138 22 F -0.141 7.141 23 F -0.139 7.139 24 N -0.255 5.255 25 C 0.018 3.982 26 C 0.005 3.995 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.005 0.995 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.304 0.815 -14.160 19.446 hybrid contribution 0.301 -0.570 0.795 1.024 sum -13.003 0.245 -13.365 18.648 Atomic orbital electron populations 1.22447 0.94981 1.02819 1.03595 1.21761 0.93781 0.97916 0.87648 0.89044 1.21631 0.96502 0.99430 0.96136 1.18797 0.92045 0.94494 0.94297 1.21832 0.92064 1.38923 1.05167 0.92512 1.25859 0.97587 0.96154 0.99956 1.70091 1.02162 1.47933 1.37067 0.85703 0.76932 0.79252 0.80388 1.19628 1.21332 1.19009 1.62209 1.61075 1.00463 1.03656 1.22723 0.98123 1.01206 0.87000 1.22700 1.04549 0.70242 1.02375 1.50677 1.46348 1.09531 1.07554 1.77769 1.21526 0.98140 1.12418 1.24002 1.06089 0.94073 0.92775 1.16073 0.74696 0.80214 0.76192 1.93256 1.75859 1.94407 1.50235 1.93267 1.80753 1.67478 1.72601 1.93256 1.41383 1.87532 1.91693 1.69877 1.24315 1.19473 1.11882 1.24646 0.94539 0.85932 0.93053 1.20947 1.00826 0.89765 0.88000 0.90593 0.92191 0.90810 0.92115 0.92940 0.98522 0.99522 0.93225 0.90922 0.84680 0.84603 0.88219 0.87729 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 8.50 71.98 0.61 -2.39 16 2 C 0.10 2.36 2.36 44.92 0.11 2.46 16 3 H 0.09 2.24 8.02 -2.39 -0.02 2.22 16 4 C -0.10 -3.45 4.36 30.59 0.13 -3.31 16 5 C 0.04 2.00 4.78 29.84 0.14 2.15 16 6 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 7 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 8 C 0.00 0.11 5.46 84.66 0.46 0.57 16 9 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 10 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 N -0.55 -13.67 4.12 -872.82 -3.59 -17.27 16 15 C 0.04 0.60 4.82 86.43 0.42 1.02 16 16 C 0.12 2.20 7.54 86.56 0.65 2.86 16 17 N -0.35 -9.57 4.07 -338.03 -1.37 -10.95 16 18 N -0.27 -8.19 12.55 -50.99 -0.64 -8.83 16 19 C 0.11 3.64 7.42 138.43 1.03 4.66 16 20 C 0.59 16.27 3.57 71.23 0.25 16.53 16 21 F -0.16 -4.11 17.15 44.97 0.77 -3.34 16 22 F -0.16 -4.64 17.30 44.97 0.78 -3.86 16 23 F -0.16 -4.05 17.30 44.97 0.78 -3.27 16 24 N -0.53 -17.77 11.18 -179.22 -2.00 -19.77 16 25 C 0.29 8.86 7.83 138.35 1.08 9.94 16 26 C 0.13 3.53 5.03 85.53 0.43 3.96 16 27 H 0.08 0.93 6.55 -2.39 -0.02 0.91 16 28 H 0.06 1.00 6.62 -2.39 -0.02 0.99 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.79 6.37 -2.38 -0.02 1.78 16 32 H 0.00 -0.20 7.84 -2.38 -0.02 -0.22 16 33 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.07 0.88 6.99 -2.38 -0.02 0.86 16 36 H 0.14 1.53 7.93 -2.39 -0.02 1.51 16 37 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.10 3.34 6.60 -2.39 -0.02 3.32 16 40 H 0.11 2.15 6.20 -2.39 -0.01 2.13 16 Total: -1.00 -70.85 338.49 3.66 -67.19 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.08 Total: 1.51 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.55 Total: 8.71 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -7.33 Total: -113.33 kcal Atomic # 9 Polarization: -12.80 SS G_CDS: 2.33 Total: -10.47 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.85 3.66 -67.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.187 kcal (2) G-P(sol) polarization free energy of solvation -70.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds