Wall clock time and date at job start Tue Mar 31 2020 14:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46677 * 237.42983 * 3 2 1 5 5 C 1.46504 * 119.99785 * 263.15284 * 4 3 2 6 6 C 1.52998 * 109.47373 * 264.98455 * 5 4 3 7 7 C 1.34772 * 120.00694 * 83.16032 * 4 3 2 8 8 O 1.21359 * 120.00594 * 184.04516 * 7 4 3 9 9 C 1.49343 * 119.99925 * 4.03543 * 7 4 3 10 10 O 1.21384 * 119.99824 * 354.71162 * 9 7 4 11 11 N 1.34775 * 120.00544 * 174.98359 * 9 7 4 12 12 C 1.39930 * 120.00354 * 179.72899 * 11 9 7 13 13 C 1.40453 * 125.97952 * 359.71377 * 12 11 9 14 14 C 1.35213 * 107.86901 * 179.88954 * 13 12 11 15 15 C 1.50695 * 126.06584 * 180.13438 * 14 13 12 16 16 N 1.35001 * 107.87421 * 0.37630 * 14 13 12 17 17 C 1.46493 * 125.97263 * 179.74360 * 16 14 13 18 18 C 1.50701 * 109.47419 * 269.99675 * 17 16 14 19 19 H 1.08002 * 119.99411 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00224 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99828 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46874 * 60.00367 * 22 20 18 24 24 H 1.48503 * 109.46830 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47117 * 300.00291 * 22 20 18 26 26 N 1.31271 * 125.97960 * 180.02562 * 12 11 9 27 27 H 4.40640 * 5.51453 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47151 * 117.42372 * 3 2 1 29 29 H 1.08999 * 109.47006 * 357.42229 * 3 2 1 30 30 H 1.09005 * 109.47078 * 24.97703 * 5 4 3 31 31 H 1.08996 * 109.47540 * 144.98062 * 5 4 3 32 32 H 1.09001 * 109.47550 * 59.99363 * 6 5 4 33 33 H 1.09002 * 109.47525 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.46912 * 299.99761 * 6 5 4 35 35 H 0.97003 * 119.99365 * 359.73090 * 11 9 7 36 36 H 1.07999 * 126.06797 * 0.02562 * 13 12 11 37 37 H 1.09006 * 109.47408 * 270.27977 * 15 14 13 38 38 H 1.08999 * 109.47023 * 30.28214 * 15 14 13 39 39 H 1.09007 * 109.47360 * 150.28301 * 15 14 13 40 40 H 1.09006 * 109.47182 * 29.99740 * 17 16 14 41 41 H 1.09000 * 109.47118 * 149.99370 * 17 16 14 42 42 H 0.97003 * 119.99624 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7444 1.1640 5 6 3.5200 2.1509 1.0254 6 6 5.0290 2.2448 0.7912 7 6 3.2277 0.1350 2.3624 8 8 3.5616 0.7695 3.3415 9 6 2.9206 -1.3213 2.4855 10 8 2.4946 -1.9348 1.5287 11 7 3.1113 -1.9534 3.6605 12 6 2.8183 -3.3166 3.7774 13 6 2.3169 -4.1432 2.7585 14 6 2.1715 -5.3874 3.2675 15 6 1.6642 -6.5962 2.5243 16 7 2.5564 -5.3535 4.5610 17 6 2.5538 -6.4866 5.4896 18 6 1.2239 -6.5550 6.1951 19 1 0.4575 -5.8268 5.9742 20 6 0.9857 -7.5469 7.1225 21 7 1.9192 -8.4333 7.3918 22 14 -0.6626 -7.6312 7.9975 23 1 -1.7457 -7.8078 6.9970 24 1 -0.6652 -8.7799 8.9386 25 1 -0.8869 -6.3725 8.7528 26 7 2.9583 -4.0455 4.8602 27 1 -1.0502 0.0000 -0.0003 28 1 3.0091 0.4741 -0.9121 29 1 3.0098 -1.0258 0.0462 30 1 2.9929 2.5905 0.1785 31 1 3.2592 2.6907 1.9356 32 1 5.2898 1.7050 -0.1191 33 1 5.3162 3.2912 0.6876 34 1 5.5561 1.8051 1.6380 35 1 3.4518 -1.4631 4.4252 36 1 2.0901 -3.8394 1.7473 37 1 0.5805 -6.6564 2.6252 38 1 1.9268 -6.5111 1.4699 39 1 2.1183 -7.4956 2.9405 40 1 2.7191 -7.4107 4.9356 41 1 3.3485 -6.3563 6.2241 42 1 1.7517 -9.1310 8.0446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319673335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:16 Heat of formation + Delta-G solvation = 83.189759 kcal Electronic energy + Delta-G solvation = -26029.707174 eV Core-core repulsion = 22207.428579 eV Total energy + Delta-G solvation = -3822.278596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28252 -40.40926 -38.62736 -36.93016 -34.92020 -33.40081 -33.36055 -31.52623 -31.20077 -30.89222 -27.51676 -26.94699 -26.43870 -25.53079 -23.41589 -22.46885 -20.70530 -19.94344 -19.53691 -18.44389 -17.42166 -17.14629 -16.73109 -16.33171 -16.19201 -15.60880 -15.26840 -14.90211 -14.52364 -14.36572 -14.14412 -13.98326 -13.75788 -13.49237 -13.12456 -12.90306 -12.51850 -12.41949 -12.36584 -12.24887 -11.83149 -11.46074 -11.45093 -11.43653 -11.12690 -10.82559 -10.61458 -10.61198 -10.32117 -10.26429 -9.94430 -9.61020 -9.48389 -9.19604 -8.65972 -8.04065 -7.57457 -6.27880 -4.35606 1.15670 1.86921 2.52259 2.64358 2.76387 2.98338 3.22364 3.25332 3.26356 3.31944 3.64158 3.76352 4.21216 4.28041 4.31629 4.63858 4.78996 4.88843 5.06154 5.07478 5.29286 5.33826 5.41097 5.53994 5.63307 5.80659 5.81349 5.84189 6.00294 6.05552 6.10620 6.36217 6.36837 6.53659 6.72688 6.86067 7.01101 7.27610 7.30289 7.51046 7.59421 7.64146 7.85395 7.93107 7.97734 8.54890 8.70974 9.30850 10.79583 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021082 B = 0.002771 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.803357 B =10101.905169 C =10367.293792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.198 4.198 3 C 0.203 3.797 4 N -0.583 5.583 5 C 0.109 3.891 6 C -0.169 4.169 7 C 0.518 3.482 8 O -0.511 6.511 9 C 0.511 3.489 10 O -0.489 6.489 11 N -0.598 5.598 12 C 0.257 3.743 13 C -0.287 4.287 14 C 0.093 3.907 15 C -0.084 4.084 16 N -0.312 5.312 17 C 0.258 3.742 18 C -0.538 4.538 19 H 0.064 0.936 20 C 0.066 3.934 21 N -0.892 5.892 22 Si 0.907 3.093 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 N -0.311 5.311 27 H 0.216 0.784 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.422 0.578 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 16.562 -16.998 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.199 4.199 3 C 0.082 3.918 4 N -0.317 5.317 5 C -0.013 4.013 6 C -0.227 4.227 7 C 0.301 3.699 8 O -0.386 6.386 9 C 0.291 3.709 10 O -0.362 6.362 11 N -0.246 5.246 12 C 0.005 3.995 13 C -0.318 4.318 14 C -0.039 4.039 15 C -0.142 4.142 16 N -0.095 5.095 17 C 0.140 3.860 18 C -0.576 4.576 19 H 0.082 0.918 20 C -0.137 4.137 21 N -0.529 5.529 22 Si 0.734 3.266 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.200 1.200 26 N -0.142 5.142 27 H 0.232 0.768 28 H 0.117 0.883 29 H 0.157 0.843 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.259 0.741 36 H 0.178 0.822 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.041 16.226 -15.722 22.797 hybrid contribution -1.228 0.192 0.252 1.268 sum 1.813 16.418 -15.470 22.631 Atomic orbital electron populations 1.24928 0.95945 1.00846 0.98677 1.23239 0.94615 1.00365 1.01674 1.19070 0.84449 1.00631 0.87659 1.47817 1.62925 1.12378 1.08547 1.21629 0.95937 0.80222 1.03515 1.22154 0.95488 1.02550 1.02558 1.19945 0.78605 0.87773 0.83612 1.90782 1.45502 1.66028 1.36269 1.19902 0.79937 0.87834 0.83188 1.90623 1.42381 1.66787 1.36438 1.42017 1.62182 1.06870 1.13513 1.18881 1.02478 0.83968 0.94173 1.21223 1.17501 0.91197 1.01882 1.21083 0.99476 0.97096 0.86211 1.20344 1.01726 0.93636 0.98534 1.49076 1.45403 1.06689 1.08311 1.19733 0.99402 0.79301 0.87542 1.21266 0.98876 1.13930 1.23538 0.91781 1.24919 0.97726 0.94914 0.96149 1.69909 1.33366 1.15890 1.33761 0.86405 0.83034 0.77797 0.79402 1.19918 1.20923 1.19953 1.77333 1.26527 0.90368 1.19927 0.76751 0.88322 0.84327 0.89684 0.89524 0.92159 0.91121 0.91872 0.74087 0.82170 0.90336 0.90734 0.90765 0.92641 0.92878 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 19.25 29.55 0.57 -1.39 16 2 C -0.20 -2.19 12.59 -37.12 -0.47 -2.65 16 3 C 0.20 1.85 5.51 -6.83 -0.04 1.82 16 4 N -0.58 -5.88 2.47 -177.58 -0.44 -6.32 16 5 C 0.11 0.82 6.08 -4.04 -0.02 0.79 16 6 C -0.17 -1.09 10.20 37.16 0.38 -0.71 16 7 C 0.52 6.76 7.62 -11.64 -0.09 6.67 16 8 O -0.51 -7.51 16.12 5.49 0.09 -7.42 16 9 C 0.51 7.59 7.73 -11.64 -0.09 7.50 16 10 O -0.49 -7.51 9.50 5.47 0.05 -7.46 16 11 N -0.60 -9.89 5.43 -11.58 -0.06 -9.95 16 12 C 0.26 5.19 8.10 -154.56 -1.25 3.94 16 13 C -0.29 -5.62 9.51 -39.82 -0.38 -6.00 16 14 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 15 C -0.08 -1.37 10.11 36.00 0.36 -1.01 16 16 N -0.31 -7.29 3.59 -58.33 -0.21 -7.50 16 17 C 0.26 6.53 5.99 -5.20 -0.03 6.50 16 18 C -0.54 -14.71 9.39 -34.44 -0.32 -15.03 16 19 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 22 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 N -0.31 -7.17 12.59 31.41 0.40 -6.77 16 27 H 0.22 1.61 7.80 -54.08 -0.42 1.19 16 28 H 0.10 0.58 8.02 -51.93 -0.42 0.16 16 29 H 0.14 1.43 5.37 -51.93 -0.28 1.15 16 30 H 0.08 0.46 8.03 -51.93 -0.42 0.04 16 31 H 0.09 0.74 7.52 -51.93 -0.39 0.35 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.42 6.41 8.30 -40.82 -0.34 6.07 16 36 H 0.16 2.93 5.91 -52.49 -0.31 2.62 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.23 7.07 -51.92 -0.37 0.86 16 40 H 0.06 1.38 7.04 -51.93 -0.37 1.01 16 41 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -32.15 368.37 -6.34 -38.50 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.39 Total: 6.07 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.05 Total: 3.44 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.42 Total: -54.70 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.14 Total: -14.89 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.15 -6.34 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319673335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.685 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds