Wall clock time and date at job start Tue Mar 31 2020 14:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46677 * 237.42983 * 3 2 1 5 5 C 1.46504 * 119.99785 * 263.15284 * 4 3 2 6 6 C 1.52998 * 109.47373 * 264.98455 * 5 4 3 7 7 C 1.34772 * 120.00694 * 83.16032 * 4 3 2 8 8 O 1.21359 * 120.00594 * 184.04516 * 7 4 3 9 9 C 1.49343 * 119.99925 * 4.03543 * 7 4 3 10 10 O 1.21384 * 119.99824 * 354.71162 * 9 7 4 11 11 N 1.34775 * 120.00544 * 174.98359 * 9 7 4 12 12 C 1.39930 * 120.00354 * 179.72899 * 11 9 7 13 13 C 1.40453 * 125.97952 * 359.71377 * 12 11 9 14 14 C 1.35213 * 107.86901 * 179.88954 * 13 12 11 15 15 C 1.50695 * 126.06584 * 180.13438 * 14 13 12 16 16 N 1.35001 * 107.87421 * 0.37630 * 14 13 12 17 17 C 1.46493 * 125.97263 * 179.74360 * 16 14 13 18 18 C 1.50701 * 109.47419 * 269.99675 * 17 16 14 19 19 H 1.08002 * 119.99411 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00224 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99828 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46874 * 60.00367 * 22 20 18 24 24 H 1.48503 * 109.46830 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47117 * 300.00291 * 22 20 18 26 26 N 1.31271 * 125.97960 * 180.02562 * 12 11 9 27 27 H 4.40640 * 5.51453 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47151 * 117.42372 * 3 2 1 29 29 H 1.08999 * 109.47006 * 357.42229 * 3 2 1 30 30 H 1.09005 * 109.47078 * 24.97703 * 5 4 3 31 31 H 1.08996 * 109.47540 * 144.98062 * 5 4 3 32 32 H 1.09001 * 109.47550 * 59.99363 * 6 5 4 33 33 H 1.09002 * 109.47525 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.46912 * 299.99761 * 6 5 4 35 35 H 0.97003 * 119.99365 * 359.73090 * 11 9 7 36 36 H 1.07999 * 126.06797 * 0.02562 * 13 12 11 37 37 H 1.09006 * 109.47408 * 270.27977 * 15 14 13 38 38 H 1.08999 * 109.47023 * 30.28214 * 15 14 13 39 39 H 1.09007 * 109.47360 * 150.28301 * 15 14 13 40 40 H 1.09006 * 109.47182 * 29.99740 * 17 16 14 41 41 H 1.09000 * 109.47118 * 149.99370 * 17 16 14 42 42 H 0.97003 * 119.99624 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7444 1.1640 5 6 3.5200 2.1509 1.0254 6 6 5.0290 2.2448 0.7912 7 6 3.2277 0.1350 2.3624 8 8 3.5616 0.7695 3.3415 9 6 2.9206 -1.3213 2.4855 10 8 2.4946 -1.9348 1.5287 11 7 3.1113 -1.9534 3.6605 12 6 2.8183 -3.3166 3.7774 13 6 2.3169 -4.1432 2.7585 14 6 2.1715 -5.3874 3.2675 15 6 1.6642 -6.5962 2.5243 16 7 2.5564 -5.3535 4.5610 17 6 2.5538 -6.4866 5.4896 18 6 1.2239 -6.5550 6.1951 19 1 0.4575 -5.8268 5.9742 20 6 0.9857 -7.5469 7.1225 21 7 1.9192 -8.4333 7.3918 22 14 -0.6626 -7.6312 7.9975 23 1 -1.7457 -7.8078 6.9970 24 1 -0.6652 -8.7799 8.9386 25 1 -0.8869 -6.3725 8.7528 26 7 2.9583 -4.0455 4.8602 27 1 -1.0502 0.0000 -0.0003 28 1 3.0091 0.4741 -0.9121 29 1 3.0098 -1.0258 0.0462 30 1 2.9929 2.5905 0.1785 31 1 3.2592 2.6907 1.9356 32 1 5.2898 1.7050 -0.1191 33 1 5.3162 3.2912 0.6876 34 1 5.5561 1.8051 1.6380 35 1 3.4518 -1.4631 4.4252 36 1 2.0901 -3.8394 1.7473 37 1 0.5805 -6.6564 2.6252 38 1 1.9268 -6.5111 1.4699 39 1 2.1183 -7.4956 2.9405 40 1 2.7191 -7.4107 4.9356 41 1 3.3485 -6.3563 6.2241 42 1 1.7517 -9.1310 8.0446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319673335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:15 Heat of formation + Delta-G solvation = 63.394062 kcal Electronic energy + Delta-G solvation = -26030.565580 eV Core-core repulsion = 22207.428579 eV Total energy + Delta-G solvation = -3823.137002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59399 -41.77340 -39.80447 -37.88314 -36.33843 -35.31388 -34.09723 -33.08986 -32.67706 -31.88301 -28.92044 -28.17926 -27.90502 -26.69071 -24.95326 -23.74024 -21.87199 -21.42029 -20.72903 -19.54823 -18.80778 -18.45380 -18.16076 -17.60739 -17.35312 -17.01363 -16.61897 -16.33759 -15.99876 -15.62695 -15.36467 -14.82570 -14.74767 -14.62281 -14.31980 -14.28235 -13.82856 -13.76735 -13.55681 -13.52506 -13.15684 -13.01041 -12.88365 -12.66995 -12.52275 -12.24521 -12.18567 -12.01903 -11.58300 -11.47309 -11.42205 -11.17627 -10.74210 -10.48537 -10.13089 -9.65951 -9.23162 -8.34153 -6.51378 0.00033 0.78221 1.06378 1.37726 1.39570 1.47440 1.51254 1.67449 1.96718 1.98737 2.21305 2.33581 2.60231 2.96320 3.07663 3.56655 3.80083 4.05301 4.10293 4.18903 4.30150 4.39711 4.53868 4.56735 4.69720 4.73042 4.79139 4.88450 4.93846 4.95218 4.98300 5.08465 5.11273 5.18523 5.27588 5.36547 5.52324 5.76868 5.79120 5.80665 5.99063 6.22446 6.44617 6.59902 6.70327 6.73093 6.93859 7.19501 8.72112 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021082 B = 0.002771 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.803357 B =10101.905169 C =10367.293792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.222 4.222 3 C 0.200 3.800 4 N -0.570 5.570 5 C 0.104 3.896 6 C -0.164 4.164 7 C 0.520 3.480 8 O -0.533 6.533 9 C 0.513 3.487 10 O -0.490 6.490 11 N -0.601 5.601 12 C 0.267 3.733 13 C -0.289 4.289 14 C 0.090 3.910 15 C -0.082 4.082 16 N -0.338 5.338 17 C 0.274 3.726 18 C -0.555 4.555 19 H 0.049 0.951 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.272 1.272 25 H -0.277 1.277 26 N -0.355 5.355 27 H 0.236 0.764 28 H 0.139 0.861 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.426 0.574 36 H 0.177 0.823 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 17.718 -19.116 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.223 4.223 3 C 0.080 3.920 4 N -0.302 5.302 5 C -0.016 4.016 6 C -0.222 4.222 7 C 0.302 3.698 8 O -0.410 6.410 9 C 0.294 3.706 10 O -0.363 6.363 11 N -0.251 5.251 12 C 0.013 3.987 13 C -0.319 4.319 14 C -0.040 4.040 15 C -0.140 4.140 16 N -0.121 5.121 17 C 0.155 3.845 18 C -0.593 4.593 19 H 0.068 0.932 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.197 1.197 25 H -0.203 1.203 26 N -0.186 5.186 27 H 0.253 0.747 28 H 0.157 0.843 29 H 0.145 0.855 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.264 0.736 36 H 0.194 0.806 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.059 17.411 -17.901 25.056 hybrid contribution -0.900 -0.050 0.764 1.182 sum 1.158 17.361 -17.137 24.422 Atomic orbital electron populations 1.25656 0.96953 1.00355 0.98195 1.23733 0.95486 1.00889 1.02195 1.19238 0.83725 1.00492 0.88555 1.47959 1.61274 1.13315 1.07662 1.21901 0.97113 0.78382 1.04248 1.22123 0.94187 1.03843 1.02080 1.19601 0.79039 0.86647 0.84521 1.90779 1.47039 1.66000 1.37210 1.20374 0.79100 0.88742 0.82389 1.90616 1.42092 1.67290 1.36347 1.42150 1.62768 1.05574 1.14566 1.19179 1.00682 0.85250 0.93555 1.21449 1.17371 0.90810 1.02315 1.21813 0.98247 0.98799 0.85174 1.20496 1.01796 0.91641 1.00073 1.48853 1.47618 1.06467 1.09154 1.19283 0.97620 0.80247 0.87301 1.21401 0.99367 1.13973 1.24534 0.93221 1.25713 1.01162 0.94329 0.96521 1.69992 1.35057 1.16297 1.34196 0.85432 0.78971 0.77796 0.78457 1.18843 1.19713 1.20288 1.77247 1.28739 0.90816 1.21770 0.74725 0.84333 0.85479 0.86637 0.90695 0.90888 0.89178 0.94220 0.73583 0.80558 0.89768 0.87109 0.91288 0.92603 0.95809 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.69 19.25 74.32 1.43 -2.26 16 2 C -0.22 -4.43 12.59 31.13 0.39 -4.04 16 3 C 0.20 3.15 5.51 84.57 0.47 3.62 16 4 N -0.57 -10.38 2.47 -834.10 -2.06 -12.44 16 5 C 0.10 1.31 6.08 86.38 0.53 1.84 16 6 C -0.16 -1.73 10.20 71.98 0.73 -1.00 16 7 C 0.52 13.16 7.62 87.24 0.66 13.82 16 8 O -0.53 -15.58 16.12 -3.27 -0.05 -15.63 16 9 C 0.51 14.94 7.73 87.24 0.67 15.62 16 10 O -0.49 -14.50 9.50 -3.35 -0.03 -14.53 16 11 N -0.60 -20.05 5.43 -308.91 -1.68 -21.73 16 12 C 0.27 10.88 8.10 133.40 1.08 11.96 16 13 C -0.29 -11.16 9.51 22.11 0.21 -10.95 16 14 C 0.09 3.65 6.92 41.37 0.29 3.94 16 15 C -0.08 -2.58 10.11 71.23 0.72 -1.86 16 16 N -0.34 -16.24 3.59 -338.46 -1.22 -17.45 16 17 C 0.27 14.43 5.99 85.63 0.51 14.95 16 18 C -0.55 -31.05 9.39 25.60 0.24 -30.81 16 19 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 20 C 0.02 1.31 5.46 84.65 0.46 1.77 16 21 N -0.92 -51.75 13.29 21.45 0.28 -51.47 16 22 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 26 N -0.36 -16.91 12.59 -54.54 -0.69 -17.60 16 27 H 0.24 3.03 7.80 -4.41 -0.03 2.99 16 28 H 0.14 1.08 8.02 -2.39 -0.02 1.06 16 29 H 0.13 2.36 5.37 -2.45 -0.01 2.35 16 30 H 0.12 0.80 8.03 -2.38 -0.02 0.78 16 31 H 0.07 1.17 7.52 -2.39 -0.02 1.15 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.43 13.29 8.30 -92.71 -0.77 12.52 16 36 H 0.18 6.16 5.91 -2.91 -0.02 6.15 16 37 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 38 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.07 2.24 7.07 -2.38 -0.02 2.23 16 40 H 0.06 2.88 7.04 -2.38 -0.02 2.86 16 41 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.55 368.37 5.27 -65.28 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.29 Total: 23.88 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 8.40 Total: 16.60 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -5.35 Total: -120.69 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.08 Total: -30.16 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.55 5.27 -65.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319673335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.669 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds