Wall clock time and date at job start Tue Mar 31 2020 13:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.58963 * 2 1 4 4 C 1.53197 * 109.58272 * 120.41844 * 2 1 3 5 5 C 1.53043 * 109.31157 * 174.42261 * 4 2 1 6 6 F 1.39900 * 109.46058 * 58.65623 * 5 4 2 7 7 F 1.39901 * 109.45839 * 178.63173 * 5 4 2 8 8 C 1.53076 * 109.65926 * 298.69914 * 5 4 2 9 9 C 1.53200 * 109.29319 * 61.15288 * 8 5 4 10 10 N 1.46921 * 109.58921 * 239.70685 * 2 1 3 11 11 C 1.34782 * 120.62993 * 6.63327 * 10 2 1 12 12 O 1.21351 * 119.99541 * 352.37111 * 11 10 2 13 13 C 1.49446 * 120.00065 * 172.37896 * 11 10 2 14 14 O 1.21358 * 120.00169 * 353.46917 * 13 11 10 15 15 N 1.34775 * 119.99993 * 173.47193 * 13 11 10 16 16 C 1.46502 * 119.99887 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46910 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.47065 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.47125 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99725 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99640 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00604 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99659 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46893 * 59.99955 * 23 21 19 25 25 H 1.48502 * 109.47072 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47033 * 300.00018 * 23 21 19 27 27 H 1.08998 * 109.47229 * 172.27100 * 1 2 3 28 28 H 1.09000 * 109.47689 * 292.27166 * 1 2 3 29 29 H 1.09008 * 109.46918 * 52.27032 * 1 2 3 30 30 H 1.08994 * 109.49978 * 294.37425 * 4 2 1 31 31 H 1.09001 * 109.49593 * 54.47429 * 4 2 1 32 32 H 1.09000 * 109.39518 * 301.27985 * 8 5 4 33 33 H 1.08998 * 109.62547 * 181.17029 * 8 5 4 34 34 H 1.08997 * 109.58950 * 185.71765 * 9 8 5 35 35 H 1.09001 * 109.58397 * 65.43714 * 9 8 5 36 36 H 0.96998 * 120.00084 * 359.97438 * 15 13 11 37 37 H 1.09007 * 109.47043 * 299.99474 * 16 15 13 38 38 H 1.08995 * 109.47490 * 59.99575 * 16 15 13 39 39 H 1.09004 * 109.47204 * 299.99216 * 17 16 15 40 40 H 1.08993 * 109.47701 * 59.99947 * 17 16 15 41 41 H 1.08997 * 109.47193 * 299.99603 * 18 17 16 42 42 H 1.08995 * 109.47320 * 59.99612 * 18 17 16 43 43 H 0.96997 * 120.00286 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0434 -0.7308 1.2447 5 6 3.5674 -0.8493 1.1693 6 9 4.1304 0.4282 1.0799 7 9 4.0425 -1.4887 2.3194 8 6 3.9601 -1.6642 -0.0656 9 6 3.4650 -0.9455 -1.3247 10 7 2.0225 -0.6982 -1.1952 11 6 1.1674 -1.1037 -2.1549 12 8 -0.0298 -1.0189 -1.9760 13 6 1.6938 -1.6579 -3.4391 14 8 2.8855 -1.6339 -3.6672 15 7 0.8449 -2.1843 -4.3440 16 6 1.3610 -2.7281 -5.6027 17 6 0.1983 -3.2594 -6.4433 18 6 0.7371 -3.8268 -7.7582 19 6 -0.4081 -4.3507 -8.5860 20 1 -1.4189 -4.2859 -8.2115 21 6 -0.1651 -4.9127 -9.8213 22 7 1.0659 -4.9912 -10.2775 23 14 -1.5845 -5.5628 -10.8471 24 1 -2.5333 -4.4576 -11.1360 25 1 -1.0617 -6.1123 -12.1238 26 1 -2.2870 -6.6348 -10.0971 27 1 -0.3633 -1.0183 -0.1382 28 1 -0.3634 0.3895 0.9510 29 1 -0.3633 0.6289 -0.8129 30 1 1.7659 -0.1693 2.1367 31 1 1.6028 -1.7268 1.2894 32 1 3.5036 -2.6523 -0.0075 33 1 5.0445 -1.7659 -0.1074 34 1 3.6518 -1.5693 -2.1988 35 1 3.9901 0.0034 -1.4341 36 1 -0.1075 -2.2038 -4.1615 37 1 1.8783 -1.9422 -6.1530 38 1 2.0559 -3.5404 -5.3898 39 1 -0.3186 -4.0455 -5.8928 40 1 -0.4970 -2.4475 -6.6563 41 1 1.2538 -3.0405 -8.3085 42 1 1.4326 -4.6386 -7.5457 43 1 1.2367 -5.3863 -11.1468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331213102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:23 Heat of formation + Delta-G solvation = -176.778784 kcal Electronic energy + Delta-G solvation = -27056.063015 eV Core-core repulsion = 22771.822151 eV Total energy + Delta-G solvation = -4284.240864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.04220 -48.04129 -42.22679 -40.13433 -38.38209 -37.08734 -35.25992 -33.98591 -33.25103 -32.99409 -29.25144 -28.60321 -26.48123 -25.53684 -24.45781 -23.18112 -22.36992 -22.02132 -20.73099 -18.84476 -18.48540 -18.34371 -17.99831 -17.71713 -17.40236 -17.06991 -16.83646 -16.55558 -16.33571 -16.22078 -15.39334 -15.23046 -14.95727 -14.76132 -14.39764 -14.28065 -14.08983 -14.02507 -13.78572 -13.74323 -13.60089 -13.51550 -13.26844 -12.88340 -12.72454 -12.66441 -12.54152 -12.42451 -12.33100 -11.99164 -11.68424 -11.49747 -11.22639 -11.22224 -10.53475 -10.30265 -10.03097 -9.93455 -8.18792 -6.29570 0.26039 1.15003 1.42782 1.44971 1.52843 2.03147 2.28215 2.43270 2.70725 3.00515 3.15249 3.17380 3.26647 3.32507 3.62467 3.93703 4.06312 4.09784 4.17931 4.20413 4.34220 4.43727 4.53621 4.54984 4.66915 4.70546 4.80001 4.88389 4.93547 5.01850 5.06402 5.08681 5.16890 5.34243 5.51840 5.53316 5.72393 5.85607 5.86042 6.13921 6.24742 6.64275 6.87503 6.88540 7.39868 8.92830 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.031331 B = 0.002193 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.469951 B =12764.205522 C =13276.474262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.164 4.164 5 C 0.284 3.716 6 F -0.206 7.206 7 F -0.208 7.208 8 C -0.169 4.169 9 C 0.070 3.930 10 N -0.581 5.581 11 C 0.517 3.483 12 O -0.519 6.519 13 C 0.499 3.501 14 O -0.534 6.534 15 N -0.682 5.682 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.025 3.975 19 C -0.543 4.543 20 H 0.064 0.936 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.267 1.267 25 H -0.286 1.286 26 H -0.266 1.266 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.419 0.581 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.065 0.935 41 H -0.004 1.004 42 H -0.003 1.003 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 10.024 26.110 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.202 4.202 5 C 0.248 3.752 6 F -0.187 7.187 7 F -0.189 7.189 8 C -0.208 4.208 9 C -0.051 4.051 10 N -0.315 5.315 11 C 0.300 3.700 12 O -0.396 6.396 13 C 0.280 3.720 14 O -0.413 6.413 15 N -0.334 5.334 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.788 3.212 24 H -0.192 1.192 25 H -0.211 1.211 26 H -0.191 1.191 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.162 0.838 35 H 0.102 0.898 36 H 0.257 0.743 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.926 10.048 25.920 27.952 hybrid contribution -0.459 -0.318 -0.672 0.874 sum 2.467 9.729 25.247 27.169 Atomic orbital electron populations 1.22173 0.91171 1.04019 1.01901 1.21520 0.96960 0.95815 0.81749 0.88790 1.23021 0.90956 1.05609 1.00663 1.21307 0.92860 0.77048 0.84023 1.92995 1.87330 1.41915 1.96457 1.93011 1.90326 1.82085 1.53429 1.22980 1.05380 1.00524 0.91916 1.22882 0.78105 1.03572 1.00588 1.48092 1.08300 1.55697 1.19394 1.19919 0.86328 0.79268 0.84525 1.90837 1.15350 1.54278 1.79113 1.20485 0.86455 0.79272 0.85754 1.90468 1.15737 1.57602 1.77528 1.45902 1.11944 1.57761 1.17791 1.21485 0.97289 0.98159 0.82636 1.21635 0.96576 1.00325 0.95866 1.18927 0.95577 0.94749 0.92000 1.21659 0.94528 1.39184 1.02704 0.91798 1.25962 0.98278 0.96318 0.99314 1.70081 1.21315 1.46069 1.19880 0.85526 0.79109 0.78935 0.77629 1.19202 1.21143 1.19127 0.91075 0.90775 0.92416 0.86208 0.87399 0.87650 0.86745 0.83759 0.89833 0.74313 0.91715 0.91384 0.91420 0.91603 0.98590 0.98462 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 7.61 71.98 0.55 -1.50 16 2 C 0.14 2.03 3.29 44.98 0.15 2.18 16 3 H 0.09 1.26 7.93 -2.38 -0.02 1.24 16 4 C -0.16 -1.88 4.91 30.67 0.15 -1.73 16 5 C 0.28 4.11 2.10 30.63 0.06 4.17 16 6 F -0.21 -3.54 16.11 44.97 0.72 -2.82 16 7 F -0.21 -3.55 17.06 44.97 0.77 -2.79 16 8 C -0.17 -2.27 5.63 30.69 0.17 -2.09 16 9 C 0.07 1.17 5.80 86.37 0.50 1.67 16 10 N -0.58 -10.58 2.97 -796.58 -2.37 -12.94 16 11 C 0.52 11.64 7.66 87.27 0.67 12.31 16 12 O -0.52 -12.61 11.92 -3.25 -0.04 -12.65 16 13 C 0.50 12.91 7.75 87.27 0.68 13.58 16 14 O -0.53 -15.45 13.15 -3.27 -0.04 -15.49 16 15 N -0.68 -17.89 5.55 -464.41 -2.58 -20.47 16 16 C 0.13 4.01 5.67 86.38 0.49 4.50 16 17 C -0.11 -3.88 5.27 30.60 0.16 -3.72 16 18 C 0.03 1.25 4.97 29.85 0.15 1.40 16 19 C -0.54 -29.67 9.11 25.60 0.23 -29.43 16 20 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 21 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 22 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 23 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H 0.07 1.31 6.36 -2.39 -0.02 1.29 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.08 7.11 -2.38 -0.02 1.06 16 30 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.15 2.98 4.24 -53.64 -0.23 2.75 16 35 H 0.08 1.37 7.93 -2.39 -0.02 1.35 16 36 H 0.42 9.78 7.96 -92.71 -0.74 9.04 16 37 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -64.46 353.26 3.28 -61.18 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.08 Total: 14.52 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 4.42 Total: 1.75 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -4.66 Total: -88.97 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.08 Total: -28.14 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 1.49 Total: -5.61 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.46 3.28 -61.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331213102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.594 kcal (2) G-P(sol) polarization free energy of solvation -64.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds