Wall clock time and date at job start Tue Mar 31 2020 13:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.59186 * 2 1 4 4 C 1.53193 * 109.58715 * 239.70941 * 2 1 3 5 5 C 1.53046 * 109.30989 * 185.43747 * 4 2 1 6 6 F 1.39902 * 109.45532 * 181.39011 * 5 4 2 7 7 F 1.39900 * 109.46275 * 301.35771 * 5 4 2 8 8 C 1.53034 * 109.53954 * 61.37131 * 5 4 2 9 9 C 1.53195 * 109.31164 * 298.63481 * 8 5 4 10 10 N 1.46928 * 109.58391 * 120.28275 * 2 1 3 11 11 C 1.34775 * 120.63000 * 353.52711 * 10 2 1 12 12 O 1.21356 * 120.00147 * 7.20523 * 11 10 2 13 13 C 1.49455 * 120.00299 * 187.19970 * 11 10 2 14 14 O 1.21345 * 119.99844 * 6.53099 * 13 11 10 15 15 N 1.34771 * 120.00317 * 186.53500 * 13 11 10 16 16 C 1.46498 * 120.00221 * 180.02562 * 15 13 11 17 17 C 1.53005 * 109.47276 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47013 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47192 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99494 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00280 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99761 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00098 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46845 * 89.99537 * 23 21 19 25 25 H 1.48492 * 109.46826 * 209.99545 * 23 21 19 26 26 H 1.48493 * 109.46948 * 329.99685 * 23 21 19 27 27 H 1.08991 * 109.47337 * 182.71787 * 1 2 3 28 28 H 1.09000 * 109.47301 * 302.72345 * 1 2 3 29 29 H 1.08999 * 109.46505 * 62.71909 * 1 2 3 30 30 H 1.08992 * 109.50061 * 305.39352 * 4 2 1 31 31 H 1.09007 * 109.49348 * 65.49074 * 4 2 1 32 32 H 1.09009 * 109.49868 * 58.57580 * 8 5 4 33 33 H 1.08992 * 109.50143 * 178.64910 * 8 5 4 34 34 H 1.08995 * 109.58676 * 174.42691 * 9 8 5 35 35 H 1.09000 * 109.58286 * 294.70456 * 9 8 5 36 36 H 0.97007 * 120.00092 * 359.97438 * 15 13 11 37 37 H 1.09000 * 109.47076 * 299.99272 * 16 15 13 38 38 H 1.09001 * 109.47395 * 59.99642 * 16 15 13 39 39 H 1.09000 * 109.46670 * 299.99761 * 17 16 15 40 40 H 1.09001 * 109.47004 * 59.99643 * 17 16 15 41 41 H 1.08996 * 109.47190 * 299.99956 * 18 17 16 42 42 H 1.09001 * 109.47459 * 60.00005 * 18 17 16 43 43 H 0.97009 * 119.99870 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7280 -1.2462 5 6 3.5679 -0.8435 -1.1727 6 9 4.0431 -1.4798 -2.3245 7 9 4.1284 0.4350 -1.0817 8 6 3.9603 -1.6609 0.0601 9 6 3.4684 -0.9437 1.3212 10 7 2.0225 -0.6981 1.1954 11 6 1.1670 -1.1062 2.1535 12 8 -0.0302 -1.0168 1.9762 13 6 1.6926 -1.6689 3.4344 14 8 2.8845 -1.6497 3.6616 15 7 0.8430 -2.1978 4.3370 16 6 1.3582 -2.7489 5.5928 17 6 0.1945 -3.2806 6.4320 18 6 0.7327 -3.8567 7.7432 19 6 -0.4134 -4.3810 8.5694 20 1 -1.4245 -4.3098 8.1967 21 6 -0.1712 -4.9503 9.8015 22 7 1.0601 -5.0364 10.2555 23 14 -1.5919 -5.5995 10.8260 24 1 -1.8326 -7.0260 10.4909 25 1 -1.2579 -5.4792 12.2679 26 1 -2.8146 -4.8092 10.5335 27 1 -0.3633 -1.0264 0.0487 28 1 -0.3634 0.5555 0.8646 29 1 -0.3632 0.4710 -0.9134 30 1 1.6049 -1.7247 -1.2920 31 1 1.7639 -0.1656 -2.1372 32 1 3.5035 -2.6490 0.0021 33 1 5.0448 -1.7632 0.0987 34 1 3.6575 -1.5684 2.1941 35 1 3.9937 0.0052 1.4303 36 1 -0.1098 -2.2129 4.1556 37 1 2.0511 -3.5619 5.3756 38 1 1.8777 -1.9670 6.1468 39 1 -0.4980 -2.4674 6.6492 40 1 -0.3253 -4.0624 5.8782 41 1 1.4251 -4.6700 7.5256 42 1 1.2528 -3.0752 8.2971 43 1 1.2306 -5.4374 11.1222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331213104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:28 Heat of formation + Delta-G solvation = -159.038443 kcal Electronic energy + Delta-G solvation = -27052.447051 eV Core-core repulsion = 22768.975466 eV Total energy + Delta-G solvation = -4283.471585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.35939 -47.34801 -41.28609 -39.11890 -37.53141 -35.73841 -33.48669 -33.24792 -32.45277 -31.32416 -28.32710 -27.19828 -25.42070 -24.51125 -23.17444 -22.26710 -21.23036 -20.81762 -19.67014 -17.90359 -17.64723 -17.19249 -16.94974 -16.68865 -16.41279 -16.08461 -15.95399 -15.37714 -15.10503 -14.49860 -14.38654 -14.21257 -14.07110 -13.91124 -13.69339 -13.30584 -13.21585 -13.03064 -12.89181 -12.63170 -12.34968 -12.24612 -12.00191 -11.92485 -11.83732 -11.62057 -11.28297 -10.94808 -10.82486 -10.62655 -10.45457 -9.95854 -9.62068 -9.22601 -9.21506 -9.09330 -8.99957 -8.41608 -6.06376 -4.09542 1.25599 2.05952 3.02762 3.18328 3.28544 3.35174 3.37381 3.38854 3.62874 3.86529 3.92623 4.20502 4.31035 4.41322 4.57258 4.72157 4.82591 4.95865 5.09668 5.10738 5.27011 5.29794 5.35775 5.48716 5.50797 5.61196 5.62187 5.74464 5.80811 6.00465 6.17492 6.29459 6.47225 6.63886 6.73042 6.89403 7.17783 7.57126 7.58907 7.68349 7.91084 7.93078 8.32696 8.96941 9.55127 11.04872 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.002193 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.684236 B =12767.401104 C =13279.932896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.171 4.171 5 C 0.287 3.713 6 F -0.201 7.201 7 F -0.198 7.198 8 C -0.174 4.174 9 C 0.069 3.931 10 N -0.587 5.587 11 C 0.513 3.487 12 O -0.509 6.509 13 C 0.499 3.501 14 O -0.519 6.519 15 N -0.686 5.686 16 C 0.112 3.888 17 C -0.123 4.123 18 C 0.025 3.975 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.740 9.894 -24.533 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.209 4.209 5 C 0.250 3.750 6 F -0.182 7.182 7 F -0.179 7.179 8 C -0.212 4.212 9 C -0.053 4.053 10 N -0.322 5.322 11 C 0.296 3.704 12 O -0.384 6.384 13 C 0.280 3.720 14 O -0.398 6.398 15 N -0.337 5.337 16 C -0.010 4.010 17 C -0.161 4.161 18 C -0.013 4.013 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.176 0.824 35 H 0.099 0.901 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.051 9.905 -24.302 26.554 hybrid contribution -0.860 -0.292 0.242 0.940 sum 3.192 9.613 -24.060 26.105 Atomic orbital electron populations 1.22259 0.91139 1.04482 1.01770 1.21374 0.97013 0.95499 0.82126 0.89478 1.23052 0.92058 1.05060 1.00767 1.21126 0.92217 0.77459 0.84159 1.93024 1.90161 1.82096 1.52892 1.93008 1.87198 1.41248 1.96427 1.22995 1.04641 1.00564 0.93040 1.22997 0.78418 1.03538 1.00302 1.48087 1.08175 1.56377 1.19519 1.20255 0.86327 0.79035 0.84754 1.90831 1.15022 1.53462 1.79123 1.20141 0.86774 0.79822 0.85241 1.90442 1.15071 1.57377 1.76883 1.46112 1.11405 1.57374 1.18779 1.21891 0.98610 0.98445 0.82019 1.21933 0.95840 1.00001 0.98311 1.19028 0.96663 0.96064 0.89545 1.21190 0.93440 1.39179 1.02359 0.92577 1.25023 0.95628 0.95983 0.97795 1.69961 1.19029 1.44743 1.19554 0.86571 0.82554 0.79288 0.79464 1.20631 1.21190 1.19860 0.90421 0.90254 0.93104 0.88063 0.88036 0.88313 0.87809 0.82378 0.90120 0.75204 0.90929 0.90934 0.92395 0.92425 0.96201 0.96184 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 7.59 37.16 0.28 -0.90 16 2 C 0.14 1.17 3.28 -67.60 -0.22 0.94 16 3 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 4 C -0.17 -1.19 4.91 -26.61 -0.13 -1.32 16 5 C 0.29 2.36 2.10 -26.69 -0.06 2.30 16 6 F -0.20 -1.91 17.06 2.25 0.04 -1.87 16 7 F -0.20 -1.88 16.10 2.25 0.04 -1.84 16 8 C -0.17 -1.30 5.62 -26.61 -0.15 -1.45 16 9 C 0.07 0.62 5.83 -3.56 -0.02 0.60 16 10 N -0.59 -5.74 2.98 -165.50 -0.49 -6.24 16 11 C 0.51 6.04 7.66 -11.58 -0.09 5.95 16 12 O -0.51 -6.45 11.90 5.49 0.07 -6.39 16 13 C 0.50 6.62 7.76 -11.59 -0.09 6.53 16 14 O -0.52 -7.58 13.15 5.50 0.07 -7.51 16 15 N -0.69 -9.24 5.55 -60.73 -0.34 -9.58 16 16 C 0.11 1.78 5.67 -4.04 -0.02 1.75 16 17 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 23 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 H 0.08 0.76 6.75 -51.93 -0.35 0.41 16 28 H 0.08 0.80 6.75 -51.93 -0.35 0.45 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.16 1.68 4.25 -55.09 -0.23 1.44 16 35 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 36 H 0.41 5.04 7.96 -40.82 -0.32 4.72 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -30.18 353.29 -7.04 -37.22 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.27 Total: 0.90 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.19 Total: -0.62 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.09 Total: -41.35 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.14 Total: -13.90 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.18 -7.04 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331213104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.816 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds