Wall clock time and date at job start Tue Mar 31 2020 13:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.59186 * 2 1 4 4 C 1.53193 * 109.58715 * 239.70941 * 2 1 3 5 5 C 1.53046 * 109.30989 * 185.43747 * 4 2 1 6 6 F 1.39902 * 109.45532 * 181.39011 * 5 4 2 7 7 F 1.39900 * 109.46275 * 301.35771 * 5 4 2 8 8 C 1.53034 * 109.53954 * 61.37131 * 5 4 2 9 9 C 1.53195 * 109.31164 * 298.63481 * 8 5 4 10 10 N 1.46928 * 109.58391 * 120.28275 * 2 1 3 11 11 C 1.34775 * 120.63000 * 353.52711 * 10 2 1 12 12 O 1.21356 * 120.00147 * 7.20523 * 11 10 2 13 13 C 1.49455 * 120.00299 * 187.19970 * 11 10 2 14 14 O 1.21345 * 119.99844 * 6.53099 * 13 11 10 15 15 N 1.34771 * 120.00317 * 186.53500 * 13 11 10 16 16 C 1.46498 * 120.00221 * 180.02562 * 15 13 11 17 17 C 1.53005 * 109.47276 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47013 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47192 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99494 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00280 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99761 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00098 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46845 * 89.99537 * 23 21 19 25 25 H 1.48492 * 109.46826 * 209.99545 * 23 21 19 26 26 H 1.48493 * 109.46948 * 329.99685 * 23 21 19 27 27 H 1.08991 * 109.47337 * 182.71787 * 1 2 3 28 28 H 1.09000 * 109.47301 * 302.72345 * 1 2 3 29 29 H 1.08999 * 109.46505 * 62.71909 * 1 2 3 30 30 H 1.08992 * 109.50061 * 305.39352 * 4 2 1 31 31 H 1.09007 * 109.49348 * 65.49074 * 4 2 1 32 32 H 1.09009 * 109.49868 * 58.57580 * 8 5 4 33 33 H 1.08992 * 109.50143 * 178.64910 * 8 5 4 34 34 H 1.08995 * 109.58676 * 174.42691 * 9 8 5 35 35 H 1.09000 * 109.58286 * 294.70456 * 9 8 5 36 36 H 0.97007 * 120.00092 * 359.97438 * 15 13 11 37 37 H 1.09000 * 109.47076 * 299.99272 * 16 15 13 38 38 H 1.09001 * 109.47395 * 59.99642 * 16 15 13 39 39 H 1.09000 * 109.46670 * 299.99761 * 17 16 15 40 40 H 1.09001 * 109.47004 * 59.99643 * 17 16 15 41 41 H 1.08996 * 109.47190 * 299.99956 * 18 17 16 42 42 H 1.09001 * 109.47459 * 60.00005 * 18 17 16 43 43 H 0.97009 * 119.99870 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7280 -1.2462 5 6 3.5679 -0.8435 -1.1727 6 9 4.0431 -1.4798 -2.3245 7 9 4.1284 0.4350 -1.0817 8 6 3.9603 -1.6609 0.0601 9 6 3.4684 -0.9437 1.3212 10 7 2.0225 -0.6981 1.1954 11 6 1.1670 -1.1062 2.1535 12 8 -0.0302 -1.0168 1.9762 13 6 1.6926 -1.6689 3.4344 14 8 2.8845 -1.6497 3.6616 15 7 0.8430 -2.1978 4.3370 16 6 1.3582 -2.7489 5.5928 17 6 0.1945 -3.2806 6.4320 18 6 0.7327 -3.8567 7.7432 19 6 -0.4134 -4.3810 8.5694 20 1 -1.4245 -4.3098 8.1967 21 6 -0.1712 -4.9503 9.8015 22 7 1.0601 -5.0364 10.2555 23 14 -1.5919 -5.5995 10.8260 24 1 -1.8326 -7.0260 10.4909 25 1 -1.2579 -5.4792 12.2679 26 1 -2.8146 -4.8092 10.5335 27 1 -0.3633 -1.0264 0.0487 28 1 -0.3634 0.5555 0.8646 29 1 -0.3632 0.4710 -0.9134 30 1 1.6049 -1.7247 -1.2920 31 1 1.7639 -0.1656 -2.1372 32 1 3.5035 -2.6490 0.0021 33 1 5.0448 -1.7632 0.0987 34 1 3.6575 -1.5684 2.1941 35 1 3.9937 0.0052 1.4303 36 1 -0.1098 -2.2129 4.1556 37 1 2.0511 -3.5619 5.3756 38 1 1.8777 -1.9670 6.1468 39 1 -0.4980 -2.4674 6.6492 40 1 -0.3253 -4.0624 5.8782 41 1 1.4251 -4.6700 7.5256 42 1 1.2528 -3.0752 8.2971 43 1 1.2306 -5.4374 11.1222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331213104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:27 Heat of formation + Delta-G solvation = -177.860662 kcal Electronic energy + Delta-G solvation = -27053.263243 eV Core-core repulsion = 22768.975466 eV Total energy + Delta-G solvation = -4284.287778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.04278 -48.04171 -42.21267 -40.13035 -38.37374 -37.08742 -35.26078 -33.97368 -33.25392 -32.99419 -29.25187 -28.60434 -26.48259 -25.53785 -24.45420 -23.17416 -22.36975 -22.02053 -20.72237 -18.84597 -18.48841 -18.34288 -17.99392 -17.73108 -17.40014 -17.06677 -16.84084 -16.54942 -16.33665 -16.20699 -15.39607 -15.22338 -14.96214 -14.76532 -14.39982 -14.29119 -14.06352 -14.02662 -13.77963 -13.72678 -13.60916 -13.50945 -13.27694 -12.87671 -12.75588 -12.66770 -12.54228 -12.39255 -12.31730 -12.01803 -11.68930 -11.50208 -11.23123 -11.20880 -10.54169 -10.30782 -10.02728 -9.94890 -8.19125 -6.29736 0.26518 1.14861 1.42704 1.43245 1.54284 2.03533 2.27948 2.43075 2.70729 3.00187 3.15085 3.17428 3.26822 3.32507 3.62689 3.93634 4.06440 4.09720 4.18021 4.20398 4.33585 4.43939 4.53549 4.54967 4.66705 4.70655 4.79915 4.88474 4.93493 5.01992 5.06696 5.07954 5.16827 5.34267 5.51004 5.53203 5.72309 5.85557 5.85993 6.13918 6.24678 6.64339 6.87538 6.88685 7.39750 8.92713 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.002193 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.684236 B =12767.401104 C =13279.932896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.164 4.164 5 C 0.284 3.716 6 F -0.208 7.208 7 F -0.205 7.205 8 C -0.169 4.169 9 C 0.070 3.930 10 N -0.581 5.581 11 C 0.517 3.483 12 O -0.519 6.519 13 C 0.499 3.501 14 O -0.534 6.534 15 N -0.683 5.683 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.025 3.975 19 C -0.541 4.541 20 H 0.064 0.936 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.262 1.262 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.419 0.581 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.067 0.933 41 H -0.003 1.003 42 H -0.004 1.004 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 10.214 -26.063 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.203 4.203 5 C 0.248 3.752 6 F -0.189 7.189 7 F -0.187 7.187 8 C -0.208 4.208 9 C -0.051 4.051 10 N -0.315 5.315 11 C 0.299 3.701 12 O -0.396 6.396 13 C 0.281 3.719 14 O -0.413 6.413 15 N -0.334 5.334 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.788 3.212 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.187 1.187 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.257 0.743 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.969 10.239 -25.872 27.983 hybrid contribution -0.457 -0.353 0.667 0.883 sum 2.512 9.886 -25.205 27.190 Atomic orbital electron populations 1.22141 0.91160 1.03578 1.02126 1.21520 0.96946 0.95857 0.81768 0.88713 1.23030 0.90981 1.05601 1.00688 1.21285 0.92882 0.77072 0.83982 1.93011 1.90325 1.82221 1.53294 1.92995 1.87421 1.41802 1.96444 1.22969 1.05396 1.00504 0.91934 1.22917 0.78000 1.03602 1.00547 1.48162 1.08297 1.55596 1.19476 1.19909 0.86314 0.79349 0.84490 1.90845 1.15332 1.54201 1.79224 1.20477 0.86456 0.79315 0.85692 1.90465 1.15738 1.57757 1.77384 1.45903 1.11902 1.57563 1.18048 1.21485 0.97291 0.98068 0.82722 1.21636 0.96565 1.00302 0.95896 1.18930 0.95587 0.94738 0.92027 1.21684 0.94482 1.38866 1.02919 0.91810 1.25964 0.98288 0.96353 0.99301 1.70094 1.21285 1.45871 1.20108 0.85466 0.79366 0.78864 0.77472 1.19851 1.21033 1.18664 0.91687 0.92023 0.90797 0.87454 0.86217 0.87644 0.86748 0.83802 0.89745 0.74318 0.91386 0.91718 0.91605 0.91426 0.98455 0.98573 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 7.59 71.98 0.55 -1.47 16 2 C 0.14 2.02 3.28 44.97 0.15 2.17 16 3 H 0.10 1.26 7.92 -2.39 -0.02 1.24 16 4 C -0.16 -1.89 4.91 30.67 0.15 -1.74 16 5 C 0.28 4.10 2.10 30.62 0.06 4.17 16 6 F -0.21 -3.55 17.06 44.97 0.77 -2.79 16 7 F -0.21 -3.52 16.10 44.97 0.72 -2.80 16 8 C -0.17 -2.26 5.62 30.67 0.17 -2.09 16 9 C 0.07 1.18 5.83 86.31 0.50 1.68 16 10 N -0.58 -10.58 2.98 -795.87 -2.38 -12.96 16 11 C 0.52 11.65 7.66 87.27 0.67 12.32 16 12 O -0.52 -12.64 11.90 -3.27 -0.04 -12.68 16 13 C 0.50 12.93 7.76 87.27 0.68 13.60 16 14 O -0.53 -15.46 13.15 -3.23 -0.04 -15.50 16 15 N -0.68 -17.92 5.55 -464.41 -2.58 -20.49 16 16 C 0.13 4.02 5.67 86.38 0.49 4.51 16 17 C -0.11 -3.88 5.27 30.60 0.16 -3.72 16 18 C 0.02 1.24 4.97 29.85 0.15 1.39 16 19 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 21 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 22 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 23 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 H 0.06 1.17 6.75 -2.39 -0.02 1.15 16 28 H 0.06 1.17 6.75 -2.39 -0.02 1.16 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.15 2.97 4.25 -52.37 -0.22 2.74 16 35 H 0.08 1.37 7.92 -2.39 -0.02 1.35 16 36 H 0.42 9.80 7.96 -92.70 -0.74 9.06 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -64.52 353.29 3.28 -61.24 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.08 Total: 14.39 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.43 Total: 1.84 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -4.67 Total: -89.00 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.08 Total: -28.18 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 1.49 Total: -5.59 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.52 3.28 -61.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331213104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.617 kcal (2) G-P(sol) polarization free energy of solvation -64.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds