Wall clock time and date at job start Tue Mar 31 2020 14:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47352 * 2 1 4 4 C 1.50701 * 109.46729 * 120.00303 * 2 1 3 5 5 H 1.07997 * 120.00156 * 119.99856 * 4 2 1 6 6 C 1.37879 * 119.99920 * 299.99118 * 4 2 1 7 7 N 1.31509 * 119.99854 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00002 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46952 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47375 * 120.00453 * 8 6 4 11 11 H 1.48505 * 109.47272 * 240.00562 * 8 6 4 12 12 N 1.46498 * 109.47191 * 239.99849 * 2 1 3 13 13 C 1.46506 * 120.00115 * 300.00761 * 12 2 1 14 14 C 1.34777 * 120.00270 * 120.00273 * 12 2 1 15 15 O 1.21640 * 119.99584 * 7.44433 * 14 12 2 16 16 C 1.47158 * 120.00274 * 187.44642 * 14 12 2 17 17 C 1.37880 * 120.68233 * 308.80727 * 16 14 12 18 18 N 1.34062 * 121.94073 * 180.02562 * 17 16 14 19 19 C 1.46499 * 118.53638 * 179.97438 * 18 17 16 20 20 C 1.36836 * 122.92595 * 359.97337 * 18 17 16 21 21 C 1.39442 * 120.49368 * 0.02562 * 20 18 17 22 22 C 1.40981 * 107.42615 * 180.02562 * 21 20 18 23 23 N 1.30396 * 108.04797 * 359.97438 * 22 21 20 24 24 N 1.35141 * 132.79828 * 180.02562 * 20 18 17 25 25 C 1.46507 * 125.73831 * 0.02562 * 24 20 18 26 26 C 1.46755 * 118.80361 * 359.73836 * 21 20 18 27 27 O 1.21958 * 121.39813 * 180.27690 * 26 21 20 28 28 H 1.08998 * 109.46510 * 59.99962 * 1 2 3 29 29 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46735 * 300.00219 * 1 2 3 31 31 H 0.97003 * 120.00187 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46621 * 275.60834 * 13 12 2 33 33 H 1.08997 * 109.47260 * 155.61451 * 13 12 2 34 34 H 1.08999 * 109.47228 * 35.60504 * 13 12 2 35 35 H 1.07998 * 119.03222 * 0.02562 * 17 16 14 36 36 H 1.09000 * 109.47159 * 98.62361 * 19 18 17 37 37 H 1.09003 * 109.46713 * 218.62435 * 19 18 17 38 38 H 1.09000 * 109.46880 * 338.62139 * 19 18 17 39 39 H 1.08005 * 125.97281 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.46923 * 81.62420 * 25 24 20 41 41 H 1.08990 * 109.47318 * 201.62230 * 25 24 20 42 42 H 1.08997 * 109.46970 * 321.62571 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1481 -2.2858 3.6037 10 1 3.1472 -0.1860 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7933 -0.0357 -2.0833 15 8 3.1991 1.0821 -1.8275 16 6 3.1484 -0.6729 -3.3614 17 6 3.6828 -1.9436 -3.3895 18 7 4.0158 -2.5478 -4.5390 19 6 4.5786 -3.8991 -4.4819 20 6 3.8533 -1.9584 -5.7632 21 6 3.3218 -0.6733 -5.8649 22 6 3.2769 -0.3421 -7.2345 23 7 3.7474 -1.3532 -7.9102 24 7 4.1135 -2.3721 -7.0231 25 6 4.6823 -3.6693 -7.3976 26 6 2.9355 0.0313 -4.6369 27 8 2.4615 1.1545 -4.6711 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7083 1.1610 3.4844 32 1 2.3589 -2.7372 -0.8886 33 1 1.7210 -2.3107 -2.4946 34 1 0.6499 -2.2753 -1.0734 35 1 3.8377 -2.4678 -2.4580 36 1 3.7946 -4.6282 -4.6862 37 1 5.3678 -3.9957 -5.2276 38 1 4.9924 -4.0787 -3.4896 39 1 2.9166 0.5869 -7.6511 40 1 3.8936 -4.4216 -7.4108 41 1 5.1317 -3.5967 -8.3879 42 1 5.4446 -3.9546 -6.6727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362102439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:29 Heat of formation + Delta-G solvation = 62.398520 kcal Electronic energy + Delta-G solvation = -27130.547735 eV Core-core repulsion = 23307.367563 eV Total energy + Delta-G solvation = -3823.180172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22965 -39.57927 -38.41848 -37.68452 -35.15460 -34.15724 -32.97316 -31.72370 -30.66737 -29.04919 -27.94963 -26.64614 -26.12909 -25.17077 -24.01067 -23.48188 -21.23263 -20.90154 -18.99534 -18.19842 -17.58241 -16.96250 -16.85529 -16.36996 -15.71180 -15.38247 -15.25107 -14.93671 -14.83024 -14.50181 -14.25755 -14.10067 -13.87968 -13.67753 -12.96606 -12.86446 -12.72062 -12.51030 -12.35388 -12.06678 -12.00335 -11.50726 -11.47522 -11.28759 -11.04153 -10.77820 -10.64172 -10.21477 -10.12969 -9.84209 -9.50779 -9.10008 -9.01173 -8.84470 -8.39082 -7.89249 -7.50266 -6.02561 -4.10670 0.88681 1.41454 1.44656 2.10556 2.37497 3.27323 3.34700 3.36843 3.39131 3.71932 3.79655 4.04239 4.15492 4.21801 4.40322 4.41954 4.53682 4.62044 4.70023 4.79186 4.89213 5.01595 5.04212 5.27988 5.40328 5.46308 5.67377 5.84776 5.99228 6.10503 6.22768 6.26434 6.42628 6.73134 6.84589 6.92478 7.13419 7.26691 7.51975 7.60299 7.76622 8.08298 8.16039 8.25328 8.58941 8.88982 9.15882 9.55540 11.02780 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.003510 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.369078 B = 7974.933784 C = 8765.194851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.260 3.740 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.591 5.591 13 C 0.081 3.919 14 C 0.571 3.429 15 O -0.528 6.528 16 C -0.277 4.277 17 C 0.181 3.819 18 N -0.477 5.477 19 C 0.042 3.958 20 C 0.342 3.658 21 C -0.319 4.319 22 C 0.132 3.868 23 N -0.283 5.283 24 N -0.380 5.380 25 C 0.087 3.913 26 C 0.460 3.540 27 O -0.472 6.472 28 H 0.013 0.987 29 H 0.029 0.971 30 H 0.094 0.906 31 H 0.262 0.738 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.179 0.821 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.200 0.800 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -16.322 -18.202 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.083 0.917 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.323 5.323 13 C -0.063 4.063 14 C 0.356 3.644 15 O -0.404 6.404 16 C -0.290 4.290 17 C 0.055 3.945 18 N -0.174 5.174 19 C -0.099 4.099 20 C 0.115 3.885 21 C -0.334 4.334 22 C -0.057 4.057 23 N -0.102 5.102 24 N -0.166 5.166 25 C -0.053 4.053 26 C 0.342 3.658 27 O -0.350 6.350 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.196 0.804 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.217 0.783 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.391 -15.742 -19.134 25.856 hybrid contribution 0.204 -0.662 1.677 1.815 sum 7.595 -16.404 -17.457 25.130 Atomic orbital electron populations 1.22099 0.98217 0.99303 1.01007 1.18950 0.90818 0.94592 0.79656 0.91743 1.21329 1.31692 1.12857 0.90267 0.92303 1.24902 0.95040 0.95000 0.98930 1.69894 1.36374 1.22601 1.23590 0.86452 0.78527 0.79493 0.82915 1.19937 1.20949 1.21021 1.48153 1.49161 1.11415 1.23592 1.21711 1.01867 0.83645 0.99093 1.17315 0.79513 0.85589 0.81959 1.90777 1.53162 1.19496 1.76982 1.22380 1.13966 0.95499 0.97119 1.22020 0.92071 0.92801 0.87637 1.41704 1.57739 1.16407 1.01505 1.22766 1.00006 0.81101 1.06073 1.18179 0.96763 0.92302 0.81287 1.20901 1.20175 0.95779 0.96523 1.23655 0.94468 0.97590 0.90014 1.77310 1.22493 0.96930 1.13480 1.48194 1.52756 1.15219 1.00446 1.22263 0.99026 0.80092 1.03940 1.18584 0.76437 0.85913 0.84916 1.90741 1.37739 1.18188 1.88302 0.96775 0.95176 0.88766 0.92750 0.93278 0.92879 0.91039 0.80382 0.90110 0.89484 0.88037 0.78301 0.90329 0.88140 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 8.93 37.16 0.33 -3.31 16 2 C 0.26 6.80 2.63 -69.08 -0.18 6.62 16 3 H 0.06 1.98 6.92 -51.93 -0.36 1.62 16 4 C -0.52 -14.06 8.37 -34.44 -0.29 -14.35 16 5 H 0.06 1.52 7.49 -52.49 -0.39 1.13 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.59 -12.97 2.75 -176.63 -0.49 -13.46 16 13 C 0.08 1.31 8.44 59.85 0.51 1.81 16 14 C 0.57 13.00 7.01 -12.64 -0.09 12.91 16 15 O -0.53 -14.65 16.23 5.12 0.08 -14.57 16 16 C -0.28 -4.93 5.08 -102.75 -0.52 -5.45 16 17 C 0.18 2.17 7.72 -16.71 -0.13 2.04 16 18 N -0.48 -4.38 2.99 -123.32 -0.37 -4.75 16 19 C 0.04 0.15 9.66 59.85 0.58 0.73 16 20 C 0.34 3.89 7.51 -154.57 -1.16 2.73 16 21 C -0.32 -4.72 6.35 -104.97 -0.67 -5.38 16 22 C 0.13 1.67 12.07 -17.12 -0.21 1.46 16 23 N -0.28 -3.32 12.47 30.79 0.38 -2.94 16 24 N -0.38 -3.63 4.01 -67.02 -0.27 -3.90 16 25 C 0.09 0.36 10.46 59.85 0.63 0.99 16 26 C 0.46 8.70 7.15 -32.48 -0.23 8.46 16 27 O -0.47 -10.85 17.42 4.84 0.08 -10.76 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.03 0.67 6.70 -51.93 -0.35 0.32 16 30 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 0.70 7.66 -51.93 -0.40 0.31 16 33 H 0.05 0.70 5.38 -51.93 -0.28 0.42 16 34 H 0.07 1.18 6.45 -51.93 -0.34 0.84 16 35 H 0.18 1.68 6.50 -52.49 -0.34 1.34 16 36 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 0.17 4.81 -51.93 -0.25 -0.08 16 38 H 0.10 0.21 7.77 -51.93 -0.40 -0.19 16 39 H 0.20 2.06 8.06 -52.48 -0.42 1.64 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.16 5.07 -51.93 -0.26 -0.11 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -39.52 344.49 -6.24 -45.75 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.93 Total: -2.58 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -1.53 Total: 10.89 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.11 Total: -49.77 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.17 Total: -25.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.52 -6.24 -45.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362102439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.151 kcal (2) G-P(sol) polarization free energy of solvation -39.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds