Wall clock time and date at job start Tue Mar 31 2020 14:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47352 * 2 1 4 4 C 1.50701 * 109.46729 * 120.00303 * 2 1 3 5 5 H 1.07997 * 120.00156 * 119.99856 * 4 2 1 6 6 C 1.37879 * 119.99920 * 299.99118 * 4 2 1 7 7 N 1.31509 * 119.99854 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00002 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46952 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47375 * 120.00453 * 8 6 4 11 11 H 1.48505 * 109.47272 * 240.00562 * 8 6 4 12 12 N 1.46498 * 109.47191 * 239.99849 * 2 1 3 13 13 C 1.46506 * 120.00115 * 300.00761 * 12 2 1 14 14 C 1.34777 * 120.00270 * 120.00273 * 12 2 1 15 15 O 1.21640 * 119.99584 * 7.44433 * 14 12 2 16 16 C 1.47158 * 120.00274 * 187.44642 * 14 12 2 17 17 C 1.37880 * 120.68233 * 308.80727 * 16 14 12 18 18 N 1.34062 * 121.94073 * 180.02562 * 17 16 14 19 19 C 1.46499 * 118.53638 * 179.97438 * 18 17 16 20 20 C 1.36836 * 122.92595 * 359.97337 * 18 17 16 21 21 C 1.39442 * 120.49368 * 0.02562 * 20 18 17 22 22 C 1.40981 * 107.42615 * 180.02562 * 21 20 18 23 23 N 1.30396 * 108.04797 * 359.97438 * 22 21 20 24 24 N 1.35141 * 132.79828 * 180.02562 * 20 18 17 25 25 C 1.46507 * 125.73831 * 0.02562 * 24 20 18 26 26 C 1.46755 * 118.80361 * 359.73836 * 21 20 18 27 27 O 1.21958 * 121.39813 * 180.27690 * 26 21 20 28 28 H 1.08998 * 109.46510 * 59.99962 * 1 2 3 29 29 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46735 * 300.00219 * 1 2 3 31 31 H 0.97003 * 120.00187 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46621 * 275.60834 * 13 12 2 33 33 H 1.08997 * 109.47260 * 155.61451 * 13 12 2 34 34 H 1.08999 * 109.47228 * 35.60504 * 13 12 2 35 35 H 1.07998 * 119.03222 * 0.02562 * 17 16 14 36 36 H 1.09000 * 109.47159 * 98.62361 * 19 18 17 37 37 H 1.09003 * 109.46713 * 218.62435 * 19 18 17 38 38 H 1.09000 * 109.46880 * 338.62139 * 19 18 17 39 39 H 1.08005 * 125.97281 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.46923 * 81.62420 * 25 24 20 41 41 H 1.08990 * 109.47318 * 201.62230 * 25 24 20 42 42 H 1.08997 * 109.46970 * 321.62571 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1481 -2.2858 3.6037 10 1 3.1472 -0.1860 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7933 -0.0357 -2.0833 15 8 3.1991 1.0821 -1.8275 16 6 3.1484 -0.6729 -3.3614 17 6 3.6828 -1.9436 -3.3895 18 7 4.0158 -2.5478 -4.5390 19 6 4.5786 -3.8991 -4.4819 20 6 3.8533 -1.9584 -5.7632 21 6 3.3218 -0.6733 -5.8649 22 6 3.2769 -0.3421 -7.2345 23 7 3.7474 -1.3532 -7.9102 24 7 4.1135 -2.3721 -7.0231 25 6 4.6823 -3.6693 -7.3976 26 6 2.9355 0.0313 -4.6369 27 8 2.4615 1.1545 -4.6711 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7083 1.1610 3.4844 32 1 2.3589 -2.7372 -0.8886 33 1 1.7210 -2.3107 -2.4946 34 1 0.6499 -2.2753 -1.0734 35 1 3.8377 -2.4678 -2.4580 36 1 3.7946 -4.6282 -4.6862 37 1 5.3678 -3.9957 -5.2276 38 1 4.9924 -4.0787 -3.4896 39 1 2.9166 0.5869 -7.6511 40 1 3.8936 -4.4216 -7.4108 41 1 5.1317 -3.5967 -8.3879 42 1 5.4446 -3.9546 -6.6727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362102439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:28 Heat of formation + Delta-G solvation = 32.666139 kcal Electronic energy + Delta-G solvation = -27131.837028 eV Core-core repulsion = 23307.367563 eV Total energy + Delta-G solvation = -3824.469464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.16907 -40.96367 -39.58692 -39.08401 -37.02310 -35.13392 -34.66929 -32.95094 -31.74287 -30.74199 -28.61778 -27.77342 -27.32070 -27.08271 -25.07167 -24.70870 -22.85145 -21.77391 -20.54606 -19.17997 -18.94470 -18.39413 -17.84856 -17.70209 -17.25299 -16.85372 -16.42067 -16.19044 -15.77062 -15.67652 -15.40719 -15.17496 -15.06956 -14.65899 -14.53070 -14.25900 -13.91994 -13.63910 -13.50670 -13.35192 -13.11491 -12.91854 -12.78996 -12.67685 -12.58677 -12.43153 -12.15562 -12.14360 -12.04954 -11.13852 -11.03968 -10.75437 -10.56021 -10.44021 -9.92691 -9.31822 -8.97037 -8.08643 -6.26222 -0.21573 0.37889 0.60203 1.07335 1.45564 1.47672 1.58988 1.65603 1.88519 2.29903 2.48175 2.66417 3.13541 3.19459 3.29673 3.40714 3.54914 3.83215 4.01651 4.16934 4.31849 4.38121 4.41779 4.43567 4.50448 4.60135 4.70464 4.78697 4.87629 4.89581 4.97025 5.00198 5.03201 5.08160 5.27461 5.48821 5.52116 5.65729 5.72250 5.89944 6.07597 6.19404 6.33805 6.81901 6.85582 6.90017 7.37269 7.53895 8.96653 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.003510 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.369078 B = 7974.933784 C = 8765.194851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H -0.001 1.001 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.972 3.028 9 H -0.255 1.255 10 H -0.291 1.291 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.075 3.925 14 C 0.566 3.434 15 O -0.602 6.602 16 C -0.343 4.343 17 C 0.248 3.752 18 N -0.457 5.457 19 C 0.022 3.978 20 C 0.350 3.650 21 C -0.350 4.350 22 C 0.120 3.880 23 N -0.283 5.283 24 N -0.362 5.362 25 C 0.070 3.930 26 C 0.445 3.555 27 O -0.550 6.550 28 H 0.009 0.991 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.263 0.737 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.219 0.781 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.206 0.794 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -22.806 -19.124 31.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.017 0.983 4 C -0.569 4.569 5 H 0.091 0.909 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.797 3.203 9 H -0.178 1.178 10 H -0.217 1.217 11 H -0.203 1.203 12 N -0.326 5.326 13 C -0.067 4.067 14 C 0.355 3.645 15 O -0.484 6.484 16 C -0.355 4.355 17 C 0.116 3.884 18 N -0.150 5.150 19 C -0.115 4.115 20 C 0.120 3.880 21 C -0.364 4.364 22 C -0.069 4.069 23 N -0.102 5.102 24 N -0.148 5.148 25 C -0.068 4.068 26 C 0.333 3.667 27 O -0.434 6.434 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.223 0.777 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.435 -22.386 -20.152 31.563 hybrid contribution -0.313 1.126 1.788 2.136 sum 9.122 -21.260 -18.364 29.537 Atomic orbital electron populations 1.21899 0.97435 1.00326 0.99538 1.18543 0.91374 0.92095 0.81958 0.98264 1.21606 1.31694 1.13075 0.90477 0.90875 1.25869 0.95145 0.95671 1.02430 1.70071 1.37669 1.24284 1.24288 0.85300 0.78088 0.78523 0.78409 1.17808 1.21708 1.20253 1.48121 1.48653 1.13629 1.22236 1.22052 1.02490 0.80396 1.01747 1.18035 0.78403 0.84826 0.83250 1.90709 1.56134 1.22935 1.78606 1.21644 1.21183 0.98670 0.94016 1.22336 0.86233 0.90146 0.89680 1.42155 1.54967 1.18022 0.99842 1.23423 1.01705 0.77516 1.08882 1.18041 0.95890 0.91283 0.82761 1.20784 1.22166 0.97599 0.95898 1.23822 0.94994 0.98482 0.89553 1.77273 1.21838 0.97112 1.13970 1.48601 1.50972 1.16072 0.99157 1.22881 1.00674 0.77648 1.05555 1.19164 0.75348 0.85317 0.86848 1.90684 1.42173 1.21207 1.89361 0.97208 0.92672 0.91246 0.92810 0.90179 0.89624 0.91280 0.76478 0.87043 0.87112 0.85272 0.77691 0.87725 0.87192 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 8.93 71.98 0.64 -6.24 16 2 C 0.26 14.43 2.63 44.25 0.12 14.55 16 3 H 0.00 -0.04 6.92 -2.39 -0.02 -0.06 16 4 C -0.53 -28.74 8.37 25.60 0.21 -28.53 16 5 H 0.07 3.66 7.49 -2.91 -0.02 3.64 16 6 C 0.01 0.42 5.30 84.66 0.45 0.87 16 7 N -0.92 -54.89 11.32 21.45 0.24 -54.64 16 8 Si 0.97 42.53 29.54 68.60 2.03 44.55 16 9 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.60 -26.74 2.75 -830.96 -2.29 -29.03 16 13 C 0.07 2.22 8.44 127.77 1.08 3.30 16 14 C 0.57 27.32 7.01 86.59 0.61 27.92 16 15 O -0.60 -36.84 16.23 -4.04 -0.07 -36.91 16 16 C -0.34 -12.39 5.08 -18.65 -0.09 -12.48 16 17 C 0.25 5.02 7.72 84.27 0.65 5.67 16 18 N -0.46 -6.01 2.99 -544.09 -1.63 -7.64 16 19 C 0.02 -0.02 9.66 127.77 1.23 1.22 16 20 C 0.35 6.78 7.51 133.02 1.00 7.78 16 21 C -0.35 -10.39 6.35 -20.09 -0.13 -10.52 16 22 C 0.12 3.07 12.07 85.58 1.03 4.10 16 23 N -0.28 -6.06 12.47 -56.51 -0.70 -6.76 16 24 N -0.36 -5.42 4.01 -365.96 -1.47 -6.89 16 25 C 0.07 0.15 10.46 127.77 1.34 1.49 16 26 C 0.45 18.01 7.15 26.87 0.19 18.20 16 27 O -0.55 -28.29 17.42 -5.06 -0.09 -28.37 16 28 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 2.49 6.70 -2.39 -0.02 2.48 16 30 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 31 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.08 1.90 7.66 -2.39 -0.02 1.88 16 33 H 0.09 1.95 5.38 -2.39 -0.01 1.94 16 34 H 0.07 2.10 6.45 -2.39 -0.02 2.09 16 35 H 0.22 2.77 6.50 -2.91 -0.02 2.75 16 36 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.11 -0.50 4.81 -2.39 -0.01 -0.52 16 38 H 0.13 -0.60 7.77 -2.39 -0.02 -0.62 16 39 H 0.21 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.12 -0.49 5.07 -2.39 -0.01 -0.51 16 Total: -1.00 -101.22 344.49 5.43 -95.79 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.07 Total: 2.57 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 8.33 Total: 27.33 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -5.84 Total: -104.96 kcal Atomic # 8 Polarization: -65.13 SS G_CDS: -0.15 Total: -65.28 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -101.22 5.43 -95.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362102439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.457 kcal (2) G-P(sol) polarization free energy of solvation -101.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds