Wall clock time and date at job start Tue Mar 31 2020 14:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47367 * 2 1 4 4 C 1.50699 * 109.47818 * 119.99883 * 2 1 3 5 5 H 1.07997 * 120.00059 * 119.99132 * 4 2 1 6 6 C 1.37878 * 119.99883 * 300.00378 * 4 2 1 7 7 N 1.31515 * 119.99990 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99879 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47185 * 59.99533 * 8 6 4 10 10 H 1.48494 * 109.46980 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47051 * 299.99907 * 8 6 4 12 12 N 1.46903 * 109.47051 * 240.00334 * 2 1 3 13 13 C 1.46897 * 111.00181 * 84.99525 * 12 2 1 14 14 H 1.08995 * 109.47348 * 325.00217 * 13 12 2 15 15 C 1.53001 * 109.47285 * 85.00527 * 13 12 2 16 16 C 1.50703 * 109.47150 * 205.00082 * 13 12 2 17 17 O 1.21293 * 119.99946 * 0.02562 * 16 13 12 18 18 N 1.34781 * 120.00023 * 179.97438 * 16 13 12 19 19 C 1.40094 * 119.99784 * 174.72474 * 18 16 13 20 20 C 1.39275 * 119.85857 * 326.37167 * 19 18 16 21 21 C 1.36606 * 120.56951 * 179.73324 * 20 19 18 22 22 C 1.39704 * 119.98589 * 0.52776 * 21 20 19 23 23 N 1.36021 * 133.37341 * 179.70411 * 22 21 20 24 24 C 1.30708 * 109.62606 * 180.02562 * 23 22 21 25 25 O 1.35312 * 125.02905 * 180.02562 * 24 23 22 26 26 N 1.36457 * 109.94020 * 0.02562 * 24 23 22 27 27 H 0.96996 * 126.36923 * 179.97438 * 26 24 23 28 28 C 1.38434 * 107.26579 * 359.97438 * 26 24 23 29 29 C 1.38540 * 119.86068 * 146.64571 * 19 18 16 30 30 H 1.09001 * 109.46634 * 299.99584 * 1 2 3 31 31 H 1.08997 * 109.47410 * 59.99803 * 1 2 3 32 32 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00023 * 180.02562 * 7 6 4 34 34 H 1.00901 * 110.99708 * 321.04285 * 12 2 1 35 35 H 1.09002 * 109.47417 * 59.99326 * 15 13 12 36 36 H 1.08996 * 109.47550 * 179.97438 * 15 13 12 37 37 H 1.09009 * 109.46831 * 299.99920 * 15 13 12 38 38 H 0.96997 * 119.99887 * 354.72123 * 18 16 13 39 39 H 1.07994 * 119.71325 * 0.02562 * 20 19 18 40 40 H 1.07998 * 120.00144 * 180.27472 * 21 20 19 41 41 H 0.96705 * 113.99504 * 90.02873 * 25 24 23 42 42 H 1.08003 * 120.16963 * 0.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3217 -1.1202 4.0079 9 1 3.8066 -1.1208 4.0080 10 1 1.8263 -0.4206 5.2203 11 1 1.8262 -2.5202 4.0077 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2226 -2.3469 14 1 1.2575 0.9329 -2.2907 15 6 3.4110 0.9809 -2.3226 16 6 1.9784 -0.5676 -3.6259 17 8 1.8630 -1.7743 -3.5855 18 7 2.0127 0.0667 -4.8147 19 6 2.0276 -0.6741 -6.0037 20 6 2.6804 -1.9037 -6.0464 21 6 2.6993 -2.6405 -7.1965 22 6 2.0698 -2.1569 -8.3461 23 7 1.9261 -2.6445 -9.6077 24 6 1.2398 -1.7984 -10.3299 25 8 0.9148 -1.9733 -11.6317 26 7 0.8996 -0.7126 -9.5767 27 1 0.3909 0.0576 -9.8747 28 6 1.4155 -0.9146 -8.3081 29 6 1.3979 -0.1778 -7.1335 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.7096 1.1618 3.4844 34 1 1.4495 -1.4979 -1.4101 35 1 4.2358 0.2706 -2.3787 36 1 3.4577 1.6596 -3.1742 37 1 3.4861 1.5525 -1.3974 38 1 2.0270 1.0360 -4.8469 39 1 3.1717 -2.2799 -5.1614 40 1 3.2045 -3.5949 -7.2182 41 1 0.0711 -2.4256 -11.7691 42 1 0.8965 0.7782 -7.0997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364444109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:56 Heat of formation + Delta-G solvation = -19.796687 kcal Electronic energy + Delta-G solvation = -25652.723374 eV Core-core repulsion = 21825.978951 eV Total energy + Delta-G solvation = -3826.744423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.18599 -41.50135 -39.20554 -38.05878 -37.31641 -35.40674 -34.76664 -34.07930 -32.22566 -31.00943 -29.22417 -28.56642 -27.22088 -25.37914 -24.20196 -23.37402 -22.63810 -21.96958 -21.10703 -20.00708 -19.18001 -18.86187 -18.39887 -17.82010 -17.32650 -16.78437 -16.60281 -16.37824 -16.05591 -15.49474 -15.26590 -15.05473 -14.95849 -14.57560 -14.33677 -14.15616 -13.67470 -13.37959 -13.17515 -13.13547 -12.97091 -12.86759 -12.76394 -12.64282 -12.56613 -12.27280 -12.06651 -11.95076 -11.88461 -11.15264 -11.06724 -10.93483 -10.74422 -10.44606 -9.44205 -9.02635 -8.78977 -8.07779 -6.16932 -0.23658 0.38938 1.24116 1.41267 1.45542 1.46617 1.54393 1.72945 1.96531 2.46815 2.76111 2.81587 3.21082 3.52170 3.58000 3.62816 4.04408 4.14009 4.19796 4.21818 4.31989 4.33696 4.42311 4.72528 4.84080 4.90056 4.94224 4.94944 5.07005 5.11199 5.14480 5.31220 5.38478 5.42965 5.45163 5.72049 5.81079 5.84525 5.94107 6.26772 6.36227 6.64265 6.67606 6.72157 6.78542 6.95215 7.08574 7.52083 8.97544 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.038057 B = 0.002213 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.563755 B =12650.078175 C =12852.726927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.219 3.781 3 H 0.020 0.980 4 C -0.515 4.515 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.677 5.677 13 C 0.068 3.932 14 H 0.076 0.924 15 C -0.127 4.127 16 C 0.523 3.477 17 O -0.543 6.543 18 N -0.654 5.654 19 C 0.166 3.834 20 C -0.130 4.130 21 C -0.056 4.056 22 C 0.019 3.981 23 N -0.525 5.525 24 C 0.458 3.542 25 O -0.442 6.442 26 N -0.584 5.584 27 H 0.441 0.559 28 C 0.075 3.925 29 C -0.128 4.128 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.335 0.665 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.430 0.570 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.434 0.566 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 3.340 -26.673 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.111 3.889 3 H 0.038 0.962 4 C -0.553 4.553 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.310 5.310 13 C -0.046 4.046 14 H 0.093 0.907 15 C -0.185 4.185 16 C 0.311 3.689 17 O -0.419 6.419 18 N -0.301 5.301 19 C 0.070 3.930 20 C -0.152 4.152 21 C -0.077 4.077 22 C -0.098 4.098 23 N -0.257 5.257 24 C 0.153 3.847 25 O -0.248 6.248 26 N -0.211 5.211 27 H 0.284 0.716 28 C -0.036 4.036 29 C -0.152 4.152 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.270 0.730 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.297 0.703 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.713 2.137 -26.774 26.869 hybrid contribution -1.748 0.762 0.931 2.122 sum -2.461 2.899 -25.843 26.121 Atomic orbital electron populations 1.22291 1.00274 0.98963 1.00382 1.19001 0.89711 0.93356 0.86828 0.96169 1.21375 1.30415 1.12401 0.91148 0.93235 1.25629 0.95530 0.95923 1.01581 1.69968 1.37870 1.24024 1.24014 0.85636 0.78700 0.78574 0.78816 1.19918 1.20851 1.20200 1.60744 1.58821 1.08927 1.02541 1.21563 1.00761 0.94664 0.87565 0.90677 1.21726 0.94352 0.99386 1.03031 1.21069 0.74126 0.88149 0.85561 1.90697 1.47989 1.15949 1.87216 1.43336 1.72866 1.11188 1.02694 1.17400 0.96649 0.93010 0.85934 1.20682 1.01010 0.95266 0.98201 1.19944 0.98274 1.00202 0.89230 1.18974 1.04198 0.94318 0.92322 1.70602 1.22443 1.29389 1.03282 1.20352 0.95129 0.84429 0.84839 1.84818 1.46610 1.80478 1.12873 1.43207 1.48333 1.21631 1.07911 0.71634 1.18246 1.01484 0.97290 0.86590 1.19624 1.03977 1.02719 0.88848 0.91553 0.95225 0.95776 0.92971 0.84566 0.92747 0.88709 0.92616 0.73031 0.85498 0.84487 0.70335 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.54 8.92 71.98 0.64 -6.89 16 2 C 0.22 10.77 2.38 44.17 0.11 10.87 16 3 H 0.02 1.06 7.11 -2.38 -0.02 1.04 16 4 C -0.51 -28.59 8.84 25.60 0.23 -28.36 16 5 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -51.79 11.32 21.45 0.24 -51.55 16 8 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.68 -28.78 5.92 -477.16 -2.82 -31.61 16 13 C 0.07 2.15 2.84 44.17 0.13 2.28 16 14 H 0.08 2.25 7.11 -2.39 -0.02 2.23 16 15 C -0.13 -3.47 9.30 71.98 0.67 -2.80 16 16 C 0.52 15.36 6.91 87.66 0.61 15.96 16 17 O -0.54 -20.20 13.34 -3.07 -0.04 -20.24 16 18 N -0.65 -13.28 5.19 -303.30 -1.58 -14.86 16 19 C 0.17 3.64 6.27 38.14 0.24 3.87 16 20 C -0.13 -3.38 8.58 22.14 0.19 -3.19 16 21 C -0.06 -1.42 10.04 22.24 0.22 -1.20 16 22 C 0.02 0.48 7.22 39.39 0.28 0.76 16 23 N -0.52 -12.88 11.31 -306.34 -3.46 -16.34 16 24 C 0.46 7.73 9.39 179.75 1.69 9.41 16 25 O -0.44 -4.52 13.63 -85.99 -1.17 -5.69 16 26 N -0.58 -7.53 6.27 -302.39 -1.89 -9.43 16 27 H 0.44 2.18 8.96 -92.71 -0.83 1.35 16 28 C 0.07 1.41 7.30 38.74 0.28 1.69 16 29 C -0.13 -2.13 9.98 22.44 0.22 -1.90 16 30 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 31 H 0.03 1.19 7.43 -2.39 -0.02 1.17 16 32 H 0.02 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.33 14.89 7.19 -89.69 -0.64 14.24 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.67 7.69 -2.39 -0.02 1.66 16 37 H 0.05 1.76 7.43 -2.38 -0.02 1.74 16 38 H 0.43 5.35 8.41 -92.71 -0.78 4.57 16 39 H 0.13 3.79 6.41 -2.91 -0.02 3.77 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.43 -0.40 9.06 -74.05 -0.67 -1.07 16 42 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -75.36 352.49 -4.55 -79.91 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -1.80 Total: 22.01 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.96 Total: 1.61 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -9.52 Total: -123.78 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.21 Total: -25.93 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -75.36 -4.55 -79.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364444109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.112 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds