Wall clock time and date at job start Tue Mar 31 2020 14:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46950 * 2 1 4 4 C 1.50702 * 109.47359 * 119.99800 * 2 1 3 5 5 H 1.07995 * 120.00062 * 120.00364 * 4 2 1 6 6 C 1.37877 * 119.99564 * 300.00364 * 4 2 1 7 7 N 1.31513 * 120.00660 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47183 * 89.99852 * 8 6 4 10 10 H 1.48496 * 109.47190 * 209.99835 * 8 6 4 11 11 H 1.48498 * 109.47010 * 330.00034 * 8 6 4 12 12 N 1.46896 * 109.47263 * 240.00072 * 2 1 3 13 13 C 1.46901 * 111.00012 * 306.04064 * 12 2 1 14 14 C 1.38579 * 111.00174 * 70.00039 * 12 2 1 15 15 N 1.31220 * 126.47450 * 347.01508 * 14 12 2 16 16 N 1.28523 * 109.86358 * 179.97438 * 15 14 12 17 17 C 1.30295 * 110.05315 * 359.72169 * 16 15 14 18 18 C 1.50700 * 126.34925 * 180.31703 * 17 16 15 19 19 C 1.53001 * 117.49987 * 8.89116 * 18 17 16 20 20 C 1.53005 * 117.49783 * 300.23589 * 18 17 16 21 21 N 1.36451 * 126.47463 * 166.99939 * 14 12 2 22 22 C 1.46504 * 127.13821 * 0.02562 * 21 14 12 23 23 C 1.53003 * 109.46857 * 267.94835 * 22 21 14 24 24 F 1.39898 * 109.47449 * 65.02714 * 23 22 21 25 25 F 1.39903 * 109.47009 * 185.02652 * 23 22 21 26 26 F 1.39903 * 109.47087 * 305.02233 * 23 22 21 27 27 H 1.08999 * 109.47064 * 299.99891 * 1 2 3 28 28 H 1.08997 * 109.47232 * 60.00689 * 1 2 3 29 29 H 1.08998 * 109.46713 * 180.02562 * 1 2 3 30 30 H 0.96999 * 120.00365 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47184 * 190.28059 * 13 12 2 32 32 H 1.08996 * 109.47123 * 310.28232 * 13 12 2 33 33 H 1.09005 * 109.46668 * 70.28683 * 13 12 2 34 34 H 1.09004 * 115.55251 * 154.57084 * 18 17 16 35 35 H 1.08998 * 117.49533 * 0.02562 * 19 18 17 36 36 H 1.08998 * 117.49525 * 145.02341 * 19 18 17 37 37 H 1.08997 * 117.49699 * 214.98608 * 20 18 17 38 38 H 1.09000 * 117.49697 * 359.97438 * 20 18 17 39 39 H 1.08997 * 109.47134 * 147.94944 * 22 21 14 40 40 H 1.08997 * 109.47073 * 27.94211 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1193 4.0079 9 1 3.6305 -0.5436 4.4118 10 1 1.3445 -0.9488 5.1122 11 1 2.4882 -2.5651 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3077 14 6 1.7681 0.0525 -2.3405 15 7 0.9776 1.0959 -2.4324 16 7 0.9804 1.5410 -3.6381 17 6 1.7708 0.8177 -4.3795 18 6 2.0517 1.0194 -5.8463 19 6 1.5181 2.2962 -6.4988 20 6 0.8650 0.9471 -6.8094 21 7 2.2958 -0.1601 -3.5808 22 6 3.2350 -1.2136 -3.9737 23 6 4.6683 -0.6960 -3.8366 24 9 4.9443 -0.4384 -2.4895 25 9 5.5602 -1.6597 -4.3193 26 9 4.8110 0.4832 -4.5757 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7088 1.1615 3.4844 31 1 1.9452 -2.5921 -2.0935 32 1 1.5485 -2.5591 -0.3586 33 1 0.3753 -1.9516 -1.5516 34 1 3.0097 0.6367 -6.1985 35 1 0.9641 2.9906 -5.8671 36 1 2.1248 2.7534 -7.2805 37 1 1.0424 0.5172 -7.7952 38 1 -0.1188 0.7533 -6.3821 39 1 3.0491 -1.4984 -5.0092 40 1 3.0988 -2.0811 -3.3280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417467006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:13 Heat of formation + Delta-G solvation = -21.631131 kcal Electronic energy + Delta-G solvation = -28547.129559 eV Core-core repulsion = 24178.448848 eV Total energy + Delta-G solvation = -4368.680711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.21378 -47.79439 -47.59611 -42.71425 -37.73117 -36.86649 -35.34338 -32.82053 -29.64615 -29.55383 -28.66000 -25.70543 -25.23631 -23.95555 -23.75443 -22.51364 -21.70730 -20.30795 -19.48098 -18.70982 -18.50771 -18.16193 -16.69362 -16.34972 -15.75248 -15.63791 -15.33893 -14.68434 -14.61426 -14.56828 -14.46284 -14.12452 -13.96673 -13.77968 -13.74277 -13.37656 -13.18005 -12.53937 -12.51725 -12.33400 -11.68703 -11.58584 -11.47722 -11.24882 -11.00935 -10.94208 -10.79776 -10.69025 -10.54071 -10.29407 -10.17879 -10.05126 -9.86869 -8.95146 -8.91915 -8.42114 -7.52669 -6.05202 -4.12477 1.74272 2.14882 2.62549 3.14795 3.28937 3.35494 3.37011 3.52839 3.69256 3.81268 3.92801 4.24692 4.27911 4.46871 4.49802 4.67093 4.70020 4.77588 4.92830 5.26255 5.44238 5.48581 5.51768 5.72201 5.83468 5.91837 6.00551 6.08723 6.14280 6.38260 6.67452 6.82036 7.03564 7.18004 7.34987 7.55095 7.71501 7.92627 8.24353 8.38740 8.88734 9.17108 9.52115 11.01151 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004742 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.004931 B = 5902.868207 C = 7036.388084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.230 3.770 3 H 0.051 0.949 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.454 5.454 13 C 0.035 3.965 14 C 0.394 3.606 15 N -0.306 5.306 16 N -0.276 5.276 17 C 0.192 3.808 18 C -0.082 4.082 19 C -0.147 4.147 20 C -0.161 4.161 21 N -0.492 5.492 22 C 0.073 3.927 23 C 0.439 3.561 24 F -0.158 7.158 25 F -0.178 7.178 26 F -0.178 7.178 27 H 0.090 0.910 28 H 0.040 0.960 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -5.413 -18.707 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.126 3.874 3 H 0.069 0.931 4 C -0.552 4.552 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.178 5.178 13 C -0.112 4.112 14 C 0.040 3.960 15 N -0.148 5.148 16 N -0.114 5.114 17 C -0.074 4.074 18 C -0.103 4.103 19 C -0.185 4.185 20 C -0.199 4.199 21 N -0.190 5.190 22 C -0.054 4.054 23 C 0.383 3.617 24 F -0.139 7.139 25 F -0.160 7.160 26 F -0.160 7.160 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.055 0.945 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.151 0.849 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.436 -4.237 -18.009 18.817 hybrid contribution 0.972 -1.381 0.589 1.788 sum 4.407 -5.618 -17.420 18.827 Atomic orbital electron populations 1.22442 0.98825 0.99186 1.02758 1.19403 0.91395 0.94536 0.82082 0.93089 1.20990 1.31759 1.13068 0.89336 0.91770 1.24887 0.94980 0.95064 0.98932 1.69915 1.36075 1.22559 1.23683 0.86469 0.78568 0.79831 0.82328 1.20625 1.21239 1.19898 1.59383 1.56273 1.03048 0.99068 1.22403 0.96928 0.88640 1.03273 1.23350 0.92157 0.96180 0.84352 1.74972 1.17920 1.11586 1.10358 1.73952 1.17103 1.22218 0.98098 1.23519 0.99408 0.89944 0.94570 1.20022 0.99295 1.06431 0.84563 1.23004 1.02710 0.90733 1.02037 1.23090 0.96822 1.01076 0.98962 1.45819 1.37473 1.25655 1.10098 1.22909 0.83624 0.91941 1.06888 1.20775 0.89602 0.76118 0.75196 1.93352 1.94616 1.93941 1.31998 1.93203 1.71070 1.63524 1.88206 1.93206 1.96497 1.49196 1.77099 0.89095 0.94136 0.95783 0.92732 0.93781 0.88147 0.94549 0.86271 0.87104 0.88014 0.88068 0.88153 0.84933 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 8.19 37.16 0.30 -3.98 16 2 C 0.23 5.81 2.02 -68.87 -0.14 5.67 16 3 H 0.05 1.50 7.95 -51.93 -0.41 1.08 16 4 C -0.51 -13.59 7.82 -34.44 -0.27 -13.86 16 5 H 0.06 1.66 7.18 -52.49 -0.38 1.28 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.45 -9.55 4.73 -176.08 -0.83 -10.38 16 13 C 0.03 0.60 8.37 60.07 0.50 1.11 16 14 C 0.39 7.95 6.65 -318.88 -2.12 5.83 16 15 N -0.31 -6.86 9.31 30.31 0.28 -6.57 16 16 N -0.28 -5.47 11.79 32.99 0.39 -5.08 16 17 C 0.19 3.05 7.21 -154.01 -1.11 1.94 16 18 C -0.08 -0.93 5.70 -91.77 -0.52 -1.45 16 19 C -0.15 -1.47 10.15 -26.70 -0.27 -1.74 16 20 C -0.16 -1.47 10.24 -26.69 -0.27 -1.74 16 21 N -0.49 -7.78 2.69 -114.08 -0.31 -8.09 16 22 C 0.07 0.82 5.94 -4.04 -0.02 0.80 16 23 C 0.44 5.57 3.30 37.16 0.12 5.70 16 24 F -0.16 -2.62 17.30 2.25 0.04 -2.59 16 25 F -0.18 -1.98 17.32 2.25 0.04 -1.95 16 26 F -0.18 -2.38 15.65 2.25 0.04 -2.35 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 28 H 0.04 0.99 5.90 -51.93 -0.31 0.68 16 29 H 0.02 0.55 6.56 -51.93 -0.34 0.21 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 0.59 5.85 -51.93 -0.30 0.29 16 32 H 0.10 1.84 6.64 -51.93 -0.34 1.49 16 33 H 0.04 0.64 6.82 -51.93 -0.35 0.29 16 34 H 0.12 1.11 7.19 -51.93 -0.37 0.74 16 35 H 0.11 1.32 7.92 -51.93 -0.41 0.91 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.13 0.94 7.99 -51.93 -0.41 0.53 16 40 H 0.14 1.43 5.70 -51.93 -0.30 1.13 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -31.77 336.39 -8.23 -40.00 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.65 Total: 0.66 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -3.90 Total: -0.10 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.16 Total: -54.60 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.11 Total: -6.88 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.77 -8.23 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.366 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds