Wall clock time and date at job start Tue Mar 31 2020 14:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46950 * 2 1 4 4 C 1.50702 * 109.47359 * 119.99800 * 2 1 3 5 5 H 1.07995 * 120.00062 * 120.00364 * 4 2 1 6 6 C 1.37877 * 119.99564 * 300.00364 * 4 2 1 7 7 N 1.31513 * 120.00660 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47183 * 89.99852 * 8 6 4 10 10 H 1.48496 * 109.47190 * 209.99835 * 8 6 4 11 11 H 1.48498 * 109.47010 * 330.00034 * 8 6 4 12 12 N 1.46896 * 109.47263 * 240.00072 * 2 1 3 13 13 C 1.46901 * 111.00012 * 306.04064 * 12 2 1 14 14 C 1.38579 * 111.00174 * 70.00039 * 12 2 1 15 15 N 1.31220 * 126.47450 * 347.01508 * 14 12 2 16 16 N 1.28523 * 109.86358 * 179.97438 * 15 14 12 17 17 C 1.30295 * 110.05315 * 359.72169 * 16 15 14 18 18 C 1.50700 * 126.34925 * 180.31703 * 17 16 15 19 19 C 1.53001 * 117.49987 * 8.89116 * 18 17 16 20 20 C 1.53005 * 117.49783 * 300.23589 * 18 17 16 21 21 N 1.36451 * 126.47463 * 166.99939 * 14 12 2 22 22 C 1.46504 * 127.13821 * 0.02562 * 21 14 12 23 23 C 1.53003 * 109.46857 * 267.94835 * 22 21 14 24 24 F 1.39898 * 109.47449 * 65.02714 * 23 22 21 25 25 F 1.39903 * 109.47009 * 185.02652 * 23 22 21 26 26 F 1.39903 * 109.47087 * 305.02233 * 23 22 21 27 27 H 1.08999 * 109.47064 * 299.99891 * 1 2 3 28 28 H 1.08997 * 109.47232 * 60.00689 * 1 2 3 29 29 H 1.08998 * 109.46713 * 180.02562 * 1 2 3 30 30 H 0.96999 * 120.00365 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47184 * 190.28059 * 13 12 2 32 32 H 1.08996 * 109.47123 * 310.28232 * 13 12 2 33 33 H 1.09005 * 109.46668 * 70.28683 * 13 12 2 34 34 H 1.09004 * 115.55251 * 154.57084 * 18 17 16 35 35 H 1.08998 * 117.49533 * 0.02562 * 19 18 17 36 36 H 1.08998 * 117.49525 * 145.02341 * 19 18 17 37 37 H 1.08997 * 117.49699 * 214.98608 * 20 18 17 38 38 H 1.09000 * 117.49697 * 359.97438 * 20 18 17 39 39 H 1.08997 * 109.47134 * 147.94944 * 22 21 14 40 40 H 1.08997 * 109.47073 * 27.94211 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1193 4.0079 9 1 3.6305 -0.5436 4.4118 10 1 1.3445 -0.9488 5.1122 11 1 2.4882 -2.5651 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3077 14 6 1.7681 0.0525 -2.3405 15 7 0.9776 1.0959 -2.4324 16 7 0.9804 1.5410 -3.6381 17 6 1.7708 0.8177 -4.3795 18 6 2.0517 1.0194 -5.8463 19 6 1.5181 2.2962 -6.4988 20 6 0.8650 0.9471 -6.8094 21 7 2.2958 -0.1601 -3.5808 22 6 3.2350 -1.2136 -3.9737 23 6 4.6683 -0.6960 -3.8366 24 9 4.9443 -0.4384 -2.4895 25 9 5.5602 -1.6597 -4.3193 26 9 4.8110 0.4832 -4.5757 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7088 1.1615 3.4844 31 1 1.9452 -2.5921 -2.0935 32 1 1.5485 -2.5591 -0.3586 33 1 0.3753 -1.9516 -1.5516 34 1 3.0097 0.6367 -6.1985 35 1 0.9641 2.9906 -5.8671 36 1 2.1248 2.7534 -7.2805 37 1 1.0424 0.5172 -7.7952 38 1 -0.1188 0.7533 -6.3821 39 1 3.0491 -1.4984 -5.0092 40 1 3.0988 -2.0811 -3.3280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417467006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:13 Heat of formation + Delta-G solvation = -39.330393 kcal Electronic energy + Delta-G solvation = -28547.897056 eV Core-core repulsion = 24178.448848 eV Total energy + Delta-G solvation = -4369.448209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.23653 -48.76398 -48.71183 -44.09340 -39.23862 -37.90877 -36.57749 -34.78955 -31.23808 -30.74856 -30.30255 -27.30669 -27.14698 -25.13583 -24.85659 -23.43101 -23.15857 -21.58589 -20.93051 -19.75895 -19.58149 -19.26532 -18.29998 -17.71705 -17.25068 -17.06111 -16.64919 -16.40414 -15.66703 -15.63693 -15.38935 -15.38042 -15.13770 -14.94158 -14.85681 -14.83403 -14.48854 -14.18545 -13.64816 -13.44957 -13.33702 -13.08567 -12.95325 -12.73681 -12.51003 -12.42076 -12.30486 -12.13613 -11.98259 -11.92638 -11.57934 -11.48051 -11.28716 -10.93046 -10.51205 -10.37678 -9.10713 -8.11927 -6.26767 0.49498 0.93705 1.45205 1.46360 1.56488 1.61340 1.75459 2.40466 2.56184 2.76082 2.78061 2.95323 3.05409 3.17835 3.30591 3.48995 3.76684 3.85273 3.95821 4.02541 4.14989 4.32619 4.49135 4.62419 4.66806 4.78156 4.83123 4.95205 4.99287 5.08936 5.14056 5.19390 5.32604 5.39473 5.56281 5.60522 5.76330 6.01339 6.21030 6.52024 6.82553 7.42069 7.74594 8.94631 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004742 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.004931 B = 5902.868207 C = 7036.388084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.243 3.757 3 H -0.003 1.003 4 C -0.521 4.521 5 H 0.072 0.928 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.968 3.032 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.258 1.258 12 N -0.456 5.456 13 C 0.034 3.966 14 C 0.377 3.623 15 N -0.357 5.357 16 N -0.323 5.323 17 C 0.218 3.782 18 C -0.100 4.100 19 C -0.150 4.150 20 C -0.136 4.136 21 N -0.485 5.485 22 C 0.069 3.931 23 C 0.439 3.561 24 F -0.187 7.187 25 F -0.165 7.165 26 F -0.183 7.183 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.262 0.738 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.185 0.815 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -7.850 -21.345 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.137 3.863 3 H 0.015 0.985 4 C -0.559 4.559 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.793 3.207 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.182 1.182 12 N -0.180 5.180 13 C -0.112 4.112 14 C 0.021 3.979 15 N -0.199 5.199 16 N -0.159 5.159 17 C -0.050 4.050 18 C -0.120 4.120 19 C -0.188 4.188 20 C -0.174 4.174 21 N -0.183 5.183 22 C -0.056 4.056 23 C 0.384 3.616 24 F -0.168 7.168 25 F -0.147 7.147 26 F -0.164 7.164 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.166 0.834 35 H 0.101 0.899 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.203 0.797 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.690 -6.699 -20.684 22.242 hybrid contribution 0.626 -0.579 1.230 1.496 sum 5.317 -7.278 -19.455 21.441 Atomic orbital electron populations 1.22205 0.98869 0.99247 1.01009 1.18927 0.91103 0.92150 0.84131 0.98540 1.21288 1.31549 1.13133 0.89959 0.91039 1.25766 0.95093 0.95689 1.02130 1.70082 1.37391 1.24159 1.24236 0.85407 0.77628 0.79368 0.78312 1.20658 1.21147 1.18197 1.59245 1.56513 1.03989 0.98242 1.22510 0.97118 0.87098 1.04498 1.23153 0.93124 0.96147 0.85506 1.74803 1.19925 1.12969 1.12180 1.73859 1.19966 1.24265 0.97834 1.24459 0.96478 0.87965 0.96077 1.20409 1.01668 1.08176 0.81772 1.23091 1.03007 0.90583 1.02152 1.23175 0.94876 0.99773 0.99568 1.45877 1.37590 1.26502 1.08294 1.23416 0.81351 0.90554 1.10251 1.20962 0.90573 0.76175 0.73909 1.93301 1.94913 1.94204 1.34416 1.93231 1.70774 1.62826 1.87833 1.93196 1.96594 1.49690 1.76967 0.92135 0.94462 0.94580 0.92871 0.89131 0.89031 0.95153 0.83353 0.89870 0.85008 0.84126 0.89851 0.79727 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.00 8.19 71.98 0.59 -7.41 16 2 C 0.24 12.80 2.02 44.17 0.09 12.89 16 3 H 0.00 -0.21 7.95 -2.38 -0.02 -0.23 16 4 C -0.52 -28.15 7.82 25.60 0.20 -27.95 16 5 H 0.07 3.68 7.18 -2.91 -0.02 3.66 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -54.26 11.32 21.45 0.24 -54.02 16 8 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 12 N -0.46 -19.41 4.73 -710.99 -3.37 -22.78 16 13 C 0.03 1.15 8.37 127.69 1.07 2.22 16 14 C 0.38 15.40 6.65 260.11 1.73 17.13 16 15 N -0.36 -16.71 9.31 -58.01 -0.54 -17.25 16 16 N -0.32 -13.13 11.79 -49.54 -0.58 -13.72 16 17 C 0.22 6.67 7.21 137.64 0.99 7.66 16 18 C -0.10 -1.92 5.70 -11.54 -0.07 -1.98 16 19 C -0.15 -2.65 10.15 30.62 0.31 -2.34 16 20 C -0.14 -1.97 10.24 30.62 0.31 -1.66 16 21 N -0.49 -14.60 2.69 -514.84 -1.39 -15.99 16 22 C 0.07 1.29 5.94 86.38 0.51 1.81 16 23 C 0.44 10.03 3.30 71.98 0.24 10.27 16 24 F -0.19 -6.07 17.30 44.97 0.78 -5.29 16 25 F -0.17 -3.13 17.32 44.97 0.78 -2.35 16 26 F -0.18 -4.43 15.65 44.97 0.70 -3.73 16 27 H 0.06 3.50 6.07 -2.39 -0.01 3.49 16 28 H 0.04 1.92 5.90 -2.39 -0.01 1.91 16 29 H 0.04 1.71 6.56 -2.39 -0.02 1.70 16 30 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.09 2.16 5.85 -2.39 -0.01 2.15 16 32 H 0.09 3.25 6.64 -2.39 -0.02 3.23 16 33 H 0.03 1.04 6.82 -2.38 -0.02 1.03 16 34 H 0.15 2.03 7.19 -2.38 -0.02 2.01 16 35 H 0.08 1.97 7.92 -2.39 -0.02 1.95 16 36 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.19 1.55 7.99 -2.39 -0.02 1.53 16 40 H 0.16 2.51 5.70 -2.39 -0.01 2.49 16 Total: -1.00 -75.17 336.39 6.17 -68.99 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.09 Total: 9.18 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 6.43 Total: 11.78 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -5.63 Total: -123.75 kcal Atomic # 9 Polarization: -13.63 SS G_CDS: 2.26 Total: -11.37 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -75.17 6.17 -68.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.661 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds