Wall clock time and date at job start Tue Mar 31 2020 14:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.50697 * 109.47040 * 239.99886 * 2 1 3 5 5 H 1.08005 * 119.99650 * 240.00239 * 4 2 1 6 6 C 1.37872 * 120.00077 * 59.99967 * 4 2 1 7 7 N 1.31513 * 120.00343 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47310 * 59.99883 * 8 6 4 10 10 H 1.48506 * 109.46860 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46769 * 299.99981 * 8 6 4 12 12 N 1.46499 * 109.46873 * 119.99666 * 2 1 3 13 13 C 1.34776 * 120.00091 * 275.00298 * 12 2 1 14 14 O 1.21582 * 119.99986 * 359.97438 * 13 12 2 15 15 N 1.34776 * 119.99945 * 180.02562 * 13 12 2 16 16 C 1.39554 * 120.00122 * 185.09156 * 15 13 12 17 17 C 1.39036 * 119.62617 * 174.90275 * 16 15 13 18 18 C 1.38284 * 119.18003 * 179.97438 * 17 16 15 19 19 C 1.39387 * 118.43621 * 0.02562 * 18 17 16 20 20 N 1.40134 * 120.41528 * 179.72239 * 19 18 17 21 21 C 1.46757 * 124.35022 * 179.72138 * 20 19 18 22 22 C 1.54668 * 105.38253 * 162.85567 * 21 20 19 23 23 C 1.54627 * 101.67957 * 25.77039 * 22 21 20 24 24 C 1.34421 * 124.34566 * 0.02638 * 20 19 18 25 25 O 1.21291 * 124.94283 * 0.38413 * 24 20 19 26 26 C 1.38678 * 119.17546 * 359.97438 * 19 18 17 27 27 N 1.31920 * 120.74922 * 0.02562 * 26 19 18 28 28 H 1.09003 * 109.47497 * 300.00632 * 1 2 3 29 29 H 1.09009 * 109.47056 * 60.00163 * 1 2 3 30 30 H 1.08998 * 109.47575 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99958 * 95.00241 * 12 2 1 33 33 H 0.97002 * 120.00458 * 5.08306 * 15 13 12 34 34 H 1.08005 * 120.40813 * 359.96031 * 17 16 15 35 35 H 1.08007 * 120.78017 * 179.97438 * 18 17 16 36 36 H 1.08997 * 110.25248 * 281.98483 * 21 20 19 37 37 H 1.09002 * 110.24729 * 43.98846 * 21 20 19 38 38 H 1.08996 * 111.19308 * 267.60096 * 22 21 20 39 39 H 1.08993 * 110.85131 * 143.79266 * 22 21 20 40 40 H 1.09001 * 110.48693 * 216.30831 * 23 22 21 41 41 H 1.09003 * 110.60276 * 93.71991 * 23 22 21 42 42 H 1.07997 * 119.62929 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5204 -4.0076 10 1 1.8269 -0.4200 -5.2204 11 1 3.8063 -1.1211 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8582 1.1616 2.4116 15 7 2.5966 -0.6534 3.4575 16 6 2.6295 0.0128 4.6833 17 6 2.9934 -0.6799 5.8325 18 6 3.0234 -0.0106 7.0422 19 6 2.6847 1.3413 7.0613 20 7 2.6955 2.0585 8.2652 21 6 2.3606 3.4824 8.3839 22 6 2.0808 3.7141 9.8873 23 6 2.9147 2.5865 10.5383 24 6 3.0197 1.5319 9.4587 25 8 3.3481 0.3790 9.6433 26 6 2.3316 1.9666 5.8749 27 7 2.3139 1.2966 4.7387 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.7095 1.1617 -3.4844 32 1 2.2490 -1.6317 1.1527 33 1 2.8973 -1.5736 3.3975 34 1 3.2493 -1.7280 5.7811 35 1 3.3020 -0.5235 7.9510 36 1 3.1991 4.0960 8.0546 37 1 1.4714 3.7110 7.7964 38 1 1.0211 3.5960 10.1137 39 1 2.4379 4.6947 10.2017 40 1 2.4001 2.1875 11.4125 41 1 3.9046 2.9511 10.8129 42 1 2.0682 3.0140 5.8812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647364191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:32 Heat of formation + Delta-G solvation = -1.856474 kcal Electronic energy + Delta-G solvation = -25708.005035 eV Core-core repulsion = 21882.038558 eV Total energy + Delta-G solvation = -3825.966477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40672 -40.17883 -38.68357 -36.93666 -35.24594 -34.27223 -33.27074 -32.26215 -31.80617 -29.28469 -28.20335 -27.93014 -25.22239 -24.25194 -23.71088 -21.99581 -21.36147 -20.13221 -19.71757 -18.25268 -17.88107 -17.80138 -17.12077 -16.20622 -15.67143 -15.41570 -15.01723 -14.92374 -14.68303 -14.35651 -14.13986 -14.01737 -13.87045 -13.59309 -13.35755 -13.16048 -12.92605 -12.47697 -12.33966 -11.96775 -11.77194 -11.59973 -11.18554 -11.04691 -10.90197 -10.66514 -10.35238 -10.27061 -10.20053 -9.92205 -9.66375 -9.43253 -9.01663 -8.75492 -8.51797 -7.92850 -7.52688 -6.09804 -4.18917 1.04347 1.34242 2.28999 2.46608 3.04641 3.27181 3.32398 3.34119 3.72562 3.81216 3.93928 4.21790 4.30867 4.32983 4.48018 4.49858 4.80597 4.87221 4.99410 5.01915 5.04709 5.16713 5.21029 5.23014 5.31055 5.45788 5.50092 5.71377 5.90570 6.12765 6.54016 6.72585 6.80370 6.93124 7.02778 7.11732 7.23107 7.52572 7.63892 7.71104 7.80586 7.97005 8.18441 8.26684 8.77361 8.92473 9.34591 9.51011 10.96224 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.037253 B = 0.002267 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.434968 B =12346.524211 C =12839.026684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.282 3.718 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.722 5.722 13 C 0.682 3.318 14 O -0.538 6.538 15 N -0.676 5.676 16 C 0.371 3.629 17 C -0.190 4.190 18 C -0.079 4.079 19 C 0.060 3.940 20 N -0.550 5.550 21 C 0.092 3.908 22 C -0.130 4.130 23 C -0.153 4.153 24 C 0.513 3.487 25 O -0.518 6.518 26 C 0.109 3.891 27 N -0.444 5.444 28 H 0.015 0.985 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.265 0.735 32 H 0.384 0.616 33 H 0.409 0.591 34 H 0.139 0.861 35 H 0.164 0.836 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 2.870 25.305 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.180 3.820 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.375 5.375 13 C 0.381 3.619 14 O -0.410 6.410 15 N -0.324 5.324 16 C 0.138 3.862 17 C -0.215 4.215 18 C -0.107 4.107 19 C -0.037 4.037 20 N -0.274 5.274 21 C -0.030 4.030 22 C -0.168 4.168 23 C -0.193 4.193 24 C 0.302 3.698 25 O -0.395 6.395 26 C -0.053 4.053 27 N -0.158 5.158 28 H 0.034 0.966 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.216 0.784 33 H 0.244 0.756 34 H 0.156 0.844 35 H 0.181 0.819 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.784 3.905 24.312 24.780 hybrid contribution 0.776 -1.773 -0.252 1.952 sum 3.559 2.132 24.060 24.416 Atomic orbital electron populations 1.22100 0.98600 0.99022 1.00912 1.18651 0.90793 0.93748 0.78794 0.93286 1.21174 1.32489 1.13240 0.90282 0.92155 1.24881 0.94855 0.94989 0.99009 1.69895 1.35803 1.22373 1.23973 0.86494 0.79132 0.79546 0.81807 1.20194 1.21142 1.20212 1.45887 1.69142 1.13215 1.09254 1.16270 0.79580 0.85801 0.80262 1.90988 1.53834 1.13157 1.82994 1.43038 1.66964 1.16308 1.06122 1.18275 0.93935 0.88947 0.85050 1.21360 1.07559 1.01390 0.91195 1.21717 0.97231 0.92285 0.99478 1.18745 1.06192 0.92680 0.86062 1.45644 1.64724 1.11171 1.05902 1.22356 1.02437 0.80105 0.98147 1.22651 1.01442 0.99514 0.93217 1.22331 1.03392 0.95480 0.98067 1.21094 0.75995 0.88645 0.84059 1.90624 1.47036 1.18246 1.83546 1.22393 0.97561 0.99988 0.85353 1.67787 1.15108 1.06516 1.26357 0.96573 0.89144 0.95588 0.92515 0.78394 0.75575 0.84360 0.81872 0.89783 0.89146 0.89507 0.88559 0.87595 0.87363 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 2 C 0.28 7.31 2.56 -69.08 -0.18 7.13 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.72 -15.39 5.07 -59.82 -0.30 -15.70 16 13 C 0.68 14.52 8.49 -86.92 -0.74 13.78 16 14 O -0.54 -13.76 14.27 5.29 0.08 -13.68 16 15 N -0.68 -10.99 5.40 -15.78 -0.09 -11.07 16 16 C 0.37 6.06 7.42 -154.59 -1.15 4.91 16 17 C -0.19 -2.46 9.93 -39.27 -0.39 -2.85 16 18 C -0.08 -1.04 9.39 -39.14 -0.37 -1.41 16 19 C 0.06 0.76 6.63 -83.47 -0.55 0.20 16 20 N -0.55 -5.38 3.14 -112.00 -0.35 -5.73 16 21 C 0.09 0.52 6.41 -3.02 -0.02 0.50 16 22 C -0.13 -0.43 7.19 -25.00 -0.18 -0.61 16 23 C -0.15 -0.78 6.86 -26.74 -0.18 -0.96 16 24 C 0.51 5.13 7.93 -10.86 -0.09 5.05 16 25 O -0.52 -6.98 14.84 5.55 0.08 -6.90 16 26 C 0.11 1.54 10.57 -17.35 -0.18 1.36 16 27 N -0.44 -8.08 7.88 -12.19 -0.10 -8.17 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 2.48 6.07 -51.92 -0.32 2.17 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.38 6.91 8.56 -40.82 -0.35 6.56 16 33 H 0.41 4.88 8.72 -40.82 -0.36 4.52 16 34 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.16 2.15 5.34 -52.48 -0.28 1.87 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.46 7.46 -51.93 -0.39 0.07 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.16 1.78 6.86 -52.49 -0.36 1.42 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -36.30 351.12 -9.22 -45.53 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.36 Total: 8.30 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -4.08 Total: 10.86 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.21 Total: -65.12 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.16 Total: -20.58 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.30 -9.22 -45.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647364191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.670 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds