Wall clock time and date at job start Tue Mar 31 2020 14:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.50697 * 109.47040 * 239.99886 * 2 1 3 5 5 H 1.08005 * 119.99650 * 240.00239 * 4 2 1 6 6 C 1.37872 * 120.00077 * 59.99967 * 4 2 1 7 7 N 1.31513 * 120.00343 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47310 * 59.99883 * 8 6 4 10 10 H 1.48506 * 109.46860 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46769 * 299.99981 * 8 6 4 12 12 N 1.46499 * 109.46873 * 119.99666 * 2 1 3 13 13 C 1.34776 * 120.00091 * 275.00298 * 12 2 1 14 14 O 1.21582 * 119.99986 * 359.97438 * 13 12 2 15 15 N 1.34776 * 119.99945 * 180.02562 * 13 12 2 16 16 C 1.39554 * 120.00122 * 185.09156 * 15 13 12 17 17 C 1.39036 * 119.62617 * 174.90275 * 16 15 13 18 18 C 1.38284 * 119.18003 * 179.97438 * 17 16 15 19 19 C 1.39387 * 118.43621 * 0.02562 * 18 17 16 20 20 N 1.40134 * 120.41528 * 179.72239 * 19 18 17 21 21 C 1.46757 * 124.35022 * 179.72138 * 20 19 18 22 22 C 1.54668 * 105.38253 * 162.85567 * 21 20 19 23 23 C 1.54627 * 101.67957 * 25.77039 * 22 21 20 24 24 C 1.34421 * 124.34566 * 0.02638 * 20 19 18 25 25 O 1.21291 * 124.94283 * 0.38413 * 24 20 19 26 26 C 1.38678 * 119.17546 * 359.97438 * 19 18 17 27 27 N 1.31920 * 120.74922 * 0.02562 * 26 19 18 28 28 H 1.09003 * 109.47497 * 300.00632 * 1 2 3 29 29 H 1.09009 * 109.47056 * 60.00163 * 1 2 3 30 30 H 1.08998 * 109.47575 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99958 * 95.00241 * 12 2 1 33 33 H 0.97002 * 120.00458 * 5.08306 * 15 13 12 34 34 H 1.08005 * 120.40813 * 359.96031 * 17 16 15 35 35 H 1.08007 * 120.78017 * 179.97438 * 18 17 16 36 36 H 1.08997 * 110.25248 * 281.98483 * 21 20 19 37 37 H 1.09002 * 110.24729 * 43.98846 * 21 20 19 38 38 H 1.08996 * 111.19308 * 267.60096 * 22 21 20 39 39 H 1.08993 * 110.85131 * 143.79266 * 22 21 20 40 40 H 1.09001 * 110.48693 * 216.30831 * 23 22 21 41 41 H 1.09003 * 110.60276 * 93.71991 * 23 22 21 42 42 H 1.07997 * 119.62929 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5204 -4.0076 10 1 1.8269 -0.4200 -5.2204 11 1 3.8063 -1.1211 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8582 1.1616 2.4116 15 7 2.5966 -0.6534 3.4575 16 6 2.6295 0.0128 4.6833 17 6 2.9934 -0.6799 5.8325 18 6 3.0234 -0.0106 7.0422 19 6 2.6847 1.3413 7.0613 20 7 2.6955 2.0585 8.2652 21 6 2.3606 3.4824 8.3839 22 6 2.0808 3.7141 9.8873 23 6 2.9147 2.5865 10.5383 24 6 3.0197 1.5319 9.4587 25 8 3.3481 0.3790 9.6433 26 6 2.3316 1.9666 5.8749 27 7 2.3139 1.2966 4.7387 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.7095 1.1617 -3.4844 32 1 2.2490 -1.6317 1.1527 33 1 2.8973 -1.5736 3.3975 34 1 3.2493 -1.7280 5.7811 35 1 3.3020 -0.5235 7.9510 36 1 3.1991 4.0960 8.0546 37 1 1.4714 3.7110 7.7964 38 1 1.0211 3.5960 10.1137 39 1 2.4379 4.6947 10.2017 40 1 2.4001 2.1875 11.4125 41 1 3.9046 2.9511 10.8129 42 1 2.0682 3.0140 5.8812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647364191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:31 Heat of formation + Delta-G solvation = -27.515732 kcal Electronic energy + Delta-G solvation = -25709.117704 eV Core-core repulsion = 21882.038558 eV Total energy + Delta-G solvation = -3827.079146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29800 -41.39973 -40.07309 -37.74021 -36.90467 -35.80821 -34.47253 -33.98421 -32.82658 -30.92772 -29.33361 -28.62657 -27.32228 -25.34535 -24.76594 -23.10132 -22.55328 -21.48925 -20.94962 -19.84942 -19.18304 -18.63360 -17.99733 -17.64669 -16.96702 -16.91339 -16.45274 -16.31953 -15.73176 -15.50704 -15.15107 -15.09144 -14.98853 -14.74223 -14.39337 -14.34881 -14.14811 -13.70797 -13.68604 -13.26245 -12.99308 -12.87999 -12.72332 -12.36090 -12.32033 -12.22973 -12.13581 -11.77747 -11.43958 -11.13332 -11.09144 -10.99514 -10.58509 -10.45756 -10.04006 -9.74660 -8.65181 -8.15764 -6.33253 -0.03230 0.26123 1.45530 1.48283 1.48788 1.55008 1.59729 1.80787 2.26120 2.42959 2.92505 3.14305 3.22072 3.27603 3.54160 3.64642 3.83691 3.88697 3.98234 4.07754 4.20125 4.54411 4.58680 4.63206 4.70339 4.77482 4.85891 4.90660 4.94589 5.09925 5.11190 5.14398 5.20165 5.38926 5.49576 5.59862 5.67146 5.79005 5.87527 5.98132 6.09868 6.13894 6.74121 6.89885 6.97232 7.33725 7.39718 7.77389 8.90683 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.037253 B = 0.002267 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.434968 B =12346.524211 C =12839.026684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.290 3.710 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.716 5.716 13 C 0.683 3.317 14 O -0.587 6.587 15 N -0.659 5.659 16 C 0.337 3.663 17 C -0.166 4.166 18 C -0.093 4.093 19 C 0.075 3.925 20 N -0.554 5.554 21 C 0.079 3.921 22 C -0.116 4.116 23 C -0.143 4.143 24 C 0.500 3.500 25 O -0.559 6.559 26 C 0.095 3.905 27 N -0.492 5.492 28 H 0.008 0.992 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.403 0.597 33 H 0.429 0.571 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 2.140 27.068 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.187 3.813 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.800 3.200 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.370 5.370 13 C 0.382 3.618 14 O -0.463 6.463 15 N -0.310 5.310 16 C 0.105 3.895 17 C -0.190 4.190 18 C -0.121 4.121 19 C -0.023 4.023 20 N -0.278 5.278 21 C -0.041 4.041 22 C -0.154 4.154 23 C -0.183 4.183 24 C 0.291 3.709 25 O -0.438 6.438 26 C -0.066 4.066 27 N -0.206 5.206 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.269 0.731 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.577 3.150 26.160 26.590 hybrid contribution 0.556 -1.468 -0.604 1.681 sum 4.132 1.682 25.556 25.942 Atomic orbital electron populations 1.21913 0.98485 0.99365 0.99410 1.18224 0.90818 0.91631 0.80658 0.98449 1.21498 1.32675 1.13643 0.90601 0.90701 1.25822 0.94903 0.95628 1.02352 1.70053 1.36947 1.23891 1.24691 0.85354 0.78570 0.78677 0.77433 1.18788 1.21220 1.19638 1.45471 1.69304 1.13905 1.08359 1.16369 0.79148 0.85255 0.81000 1.90951 1.55871 1.15442 1.84002 1.42584 1.66451 1.17032 1.04922 1.18499 0.96407 0.89103 0.85536 1.21586 1.05031 1.02663 0.89691 1.21889 0.97856 0.92741 0.99566 1.18854 1.03695 0.92799 0.86981 1.45989 1.64132 1.12751 1.04898 1.22735 1.03235 0.77795 1.00367 1.22700 1.01701 1.00240 0.90711 1.22404 1.05022 0.94266 0.96566 1.22108 0.74709 0.89031 0.85028 1.90590 1.48683 1.20304 1.84226 1.22593 0.98346 1.00702 0.84965 1.67617 1.16248 1.08042 1.28710 0.97284 0.91353 0.94102 0.92521 0.76229 0.73113 0.80960 0.81670 0.88466 0.88706 0.88851 0.85535 0.86369 0.85461 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 2 C 0.29 15.50 2.56 44.24 0.11 15.62 16 3 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 4 C -0.55 -29.19 8.73 25.60 0.22 -28.96 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.28 11.32 21.45 0.24 -53.03 16 8 Si 0.98 42.24 29.54 68.60 2.03 44.27 16 9 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 N -0.72 -30.86 5.07 -461.43 -2.34 -33.20 16 13 C 0.68 29.78 8.49 179.06 1.52 31.30 16 14 O -0.59 -31.44 14.27 -3.97 -0.06 -31.49 16 15 N -0.66 -21.34 5.40 -322.10 -1.74 -23.07 16 16 C 0.34 11.01 7.42 132.87 0.99 12.00 16 17 C -0.17 -4.11 9.93 22.47 0.22 -3.88 16 18 C -0.09 -2.36 9.39 22.56 0.21 -2.15 16 19 C 0.07 1.86 6.63 38.20 0.25 2.11 16 20 N -0.55 -10.11 3.14 -626.85 -1.97 -12.08 16 21 C 0.08 0.72 6.41 86.90 0.56 1.28 16 22 C -0.12 -0.35 7.19 31.72 0.23 -0.12 16 23 C -0.14 -1.02 6.86 30.59 0.21 -0.81 16 24 C 0.50 9.27 7.93 87.90 0.70 9.97 16 25 O -0.56 -14.70 14.84 -3.06 -0.05 -14.74 16 26 C 0.10 2.72 10.57 84.78 0.90 3.61 16 27 N -0.49 -18.40 7.88 -192.48 -1.52 -19.91 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 3.88 6.07 -2.38 -0.01 3.87 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.40 14.15 8.56 -92.71 -0.79 13.36 16 33 H 0.43 9.71 8.72 -92.71 -0.81 8.90 16 34 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.17 4.26 5.34 -2.91 -0.02 4.24 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.79 7.46 -2.39 -0.02 0.78 16 38 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.17 3.99 6.86 -2.91 -0.02 3.97 16 Total: -1.00 -82.97 351.12 1.32 -81.65 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.52 Total: 26.82 kcal Atomic # 6 Polarization: 27.58 SS G_CDS: 7.23 Total: 34.81 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -7.32 Total: -141.31 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.10 Total: -46.24 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -82.97 1.32 -81.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647364191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.135 kcal (2) G-P(sol) polarization free energy of solvation -82.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds