Wall clock time and date at job start Tue Mar 31 2020 14:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46850 * 2 1 4 4 C 1.46502 * 119.99951 * 269.99670 * 3 2 1 5 5 C 1.50700 * 109.47405 * 270.00317 * 4 3 2 6 6 H 1.08008 * 119.99542 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00231 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99731 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47250 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47251 * 119.99445 * 9 7 5 12 12 H 1.48500 * 109.47298 * 239.99890 * 9 7 5 13 13 C 1.34780 * 120.00239 * 90.00178 * 3 2 1 14 14 O 1.21584 * 120.00391 * 179.97438 * 13 3 2 15 15 N 1.34781 * 119.99716 * 359.97438 * 13 3 2 16 16 C 1.39509 * 120.00070 * 180.02562 * 15 13 3 17 17 C 1.35837 * 126.11724 * 359.97258 * 16 15 13 18 18 C 1.40930 * 107.77893 * 180.28665 * 17 16 15 19 19 C 1.47861 * 125.94989 * 179.73130 * 18 17 16 20 20 C 1.35911 * 125.92579 * 179.71749 * 19 18 17 21 21 C 1.40978 * 106.74595 * 179.85665 * 20 19 18 22 22 C 1.34705 * 107.02035 * 0.40591 * 21 20 19 23 23 O 1.34330 * 108.67083 * 359.75148 * 22 21 20 24 24 N 1.31785 * 108.09252 * 359.55556 * 18 17 16 25 25 N 1.35894 * 126.11986 * 180.02562 * 16 15 13 26 26 C 1.46502 * 125.96413 * 359.97438 * 25 16 15 27 27 H 1.08996 * 109.46939 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46959 * 300.00212 * 1 2 3 29 29 H 1.09007 * 109.46896 * 59.99959 * 1 2 3 30 30 H 1.08999 * 109.47015 * 240.00303 * 2 1 3 31 31 H 1.08998 * 109.47174 * 119.99933 * 2 1 3 32 32 H 1.08995 * 109.47269 * 30.00525 * 4 3 2 33 33 H 1.09003 * 109.46698 * 150.00158 * 4 3 2 34 34 H 0.97007 * 119.99560 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99922 * 359.97438 * 15 13 3 36 36 H 1.08002 * 126.10747 * 0.02562 * 17 16 15 37 37 H 1.08003 * 126.62672 * 359.96320 * 20 19 18 38 38 H 1.07995 * 126.49264 * 180.18775 * 21 20 19 39 39 H 1.08001 * 125.66216 * 179.70844 * 22 21 20 40 40 H 1.09000 * 109.47065 * 89.99866 * 26 25 16 41 41 H 1.09005 * 109.47129 * 210.00077 * 26 25 16 42 42 H 1.09001 * 109.46824 * 330.00345 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8775 8 7 3.3494 3.1266 -3.6176 9 14 5.9138 2.0976 -3.4163 10 1 6.6015 1.2424 -2.4157 11 1 5.9219 1.4190 -4.7371 12 1 6.6211 3.3989 -3.5240 13 6 2.2430 2.0167 1.1672 14 8 2.6487 3.1628 1.1672 15 7 2.0179 1.3814 2.3344 16 6 2.2499 2.0393 3.5426 17 6 2.7005 3.3125 3.6874 18 6 2.8010 3.5791 5.0676 19 6 3.2578 4.8471 5.6758 20 6 3.3495 5.1054 7.0070 21 6 3.8291 6.4252 7.1325 22 6 3.9958 6.9045 5.8847 23 8 3.6497 5.9483 5.0069 24 7 2.4133 2.5027 5.7216 25 7 2.0665 1.5206 4.7852 26 6 1.5890 0.1699 5.0919 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 3.6755 3.5171 -4.4435 35 1 1.6939 0.4672 2.3344 36 1 2.9428 3.9967 2.8877 37 1 3.1041 4.4296 7.8129 38 1 4.0226 6.9533 8.0544 39 1 4.3485 7.8935 5.6320 40 1 2.4395 -0.5076 5.1679 41 1 1.0482 0.1819 6.0382 42 1 0.9241 -0.1694 4.2976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649773694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:57 Heat of formation + Delta-G solvation = 63.531804 kcal Electronic energy + Delta-G solvation = -26320.245027 eV Core-core repulsion = 22497.113998 eV Total energy + Delta-G solvation = -3823.131029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.50252 -42.56108 -41.01069 -37.23663 -36.28684 -34.86941 -34.42419 -33.87949 -31.68373 -30.94131 -30.25502 -28.73092 -27.33653 -25.24654 -24.45602 -23.64022 -22.89994 -21.98236 -21.23522 -20.49270 -19.66706 -18.66540 -18.29594 -17.74659 -17.26212 -17.15327 -16.83740 -16.44133 -16.11569 -15.85422 -15.40045 -15.21721 -14.68399 -14.64140 -14.47978 -13.80650 -13.78465 -13.71810 -13.65861 -13.38419 -13.37159 -13.29970 -13.08626 -12.72978 -12.53702 -12.32757 -12.20468 -12.09074 -11.82068 -11.69608 -11.03345 -10.96888 -10.63341 -10.49461 -9.69780 -9.14793 -9.06380 -8.21531 -6.35495 0.08127 0.79380 0.84343 1.36797 1.40196 1.50577 1.52203 1.59980 2.06284 2.16636 2.25027 2.39894 2.82494 3.09017 3.46193 3.66912 4.00581 4.09842 4.15689 4.28803 4.33742 4.38018 4.40714 4.50741 4.60008 4.63389 4.81787 4.86437 4.92769 4.95275 4.98910 5.02296 5.13287 5.20856 5.35646 5.45690 5.55217 5.59279 5.69592 5.83927 5.99498 6.05835 6.13132 6.48128 6.73022 6.91885 7.30232 7.49404 8.85413 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.003668 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.201772 B = 7632.281258 C = 9330.724271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.604 5.604 4 C 0.279 3.721 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.268 1.268 12 H -0.284 1.284 13 C 0.701 3.299 14 O -0.602 6.602 15 N -0.643 5.643 16 C 0.339 3.661 17 C -0.300 4.300 18 C 0.144 3.856 19 C 0.020 3.980 20 C -0.164 4.164 21 C -0.218 4.218 22 C -0.026 4.026 23 O -0.192 6.192 24 N -0.275 5.275 25 N -0.375 5.375 26 C 0.085 3.915 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.034 0.966 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.423 0.577 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.187 0.813 39 H 0.245 0.755 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -6.317 20.027 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.339 5.339 4 C 0.157 3.843 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.789 3.211 10 H -0.194 1.194 11 H -0.193 1.193 12 H -0.210 1.210 13 C 0.402 3.598 14 O -0.479 6.479 15 N -0.297 5.297 16 C 0.118 3.882 17 C -0.332 4.332 18 C -0.018 4.018 19 C -0.032 4.032 20 C -0.185 4.185 21 C -0.237 4.237 22 C -0.094 4.094 23 O -0.088 6.088 24 N -0.101 5.101 25 N -0.165 5.165 26 C -0.053 4.053 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.264 0.736 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.204 0.796 39 H 0.261 0.739 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.936 -6.147 20.550 22.010 hybrid contribution 0.826 0.180 -1.503 1.724 sum -4.110 -5.967 19.047 20.379 Atomic orbital electron populations 1.22197 0.94199 1.03898 1.01858 1.21813 0.95530 0.81008 1.04261 1.47474 1.66973 1.15296 1.04136 1.18725 0.95418 0.91512 0.78615 1.21738 0.97920 1.32010 1.06422 0.92926 1.25780 1.02086 0.94498 0.96484 1.70047 1.37555 1.34133 1.14823 0.85414 0.79342 0.77908 0.78399 1.19370 1.19271 1.21022 1.15808 0.79130 0.84281 0.80581 1.90852 1.52618 1.18789 1.85647 1.41802 1.69443 1.17650 1.00825 1.17516 0.98826 0.91317 0.80574 1.21514 1.17741 0.97662 0.96327 1.19090 1.00017 0.91326 0.91402 1.18989 1.07973 0.86031 0.90169 1.22099 1.03654 0.98437 0.94344 1.22175 1.06682 0.95191 0.99614 1.25135 1.02110 0.94533 0.87651 1.84112 1.65028 1.20945 1.38690 1.77494 1.24193 0.96829 1.11578 1.48830 1.54146 1.13616 0.99921 1.22407 1.01724 0.75471 1.05731 0.87940 0.92686 0.93787 0.89629 0.88832 0.94821 0.98146 0.92400 0.73590 0.83818 0.81729 0.79614 0.73936 0.88626 0.86933 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.24 71.98 0.74 -2.79 16 2 C 0.10 2.62 5.89 86.38 0.51 3.12 16 3 N -0.60 -24.77 2.46 -844.18 -2.07 -26.85 16 4 C 0.28 14.65 5.16 85.63 0.44 15.10 16 5 C -0.54 -30.82 9.39 25.60 0.24 -30.58 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.61 5.46 84.65 0.46 1.08 16 8 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 C 0.70 29.97 8.24 179.05 1.48 31.45 16 14 O -0.60 -32.31 13.03 -3.98 -0.05 -32.36 16 15 N -0.64 -20.14 5.28 -322.02 -1.70 -21.84 16 16 C 0.34 11.51 7.67 131.04 1.00 12.52 16 17 C -0.30 -12.32 9.61 22.37 0.22 -12.10 16 18 C 0.14 5.22 7.08 42.36 0.30 5.52 16 19 C 0.02 0.65 7.19 24.28 0.17 0.82 16 20 C -0.16 -4.23 10.81 22.40 0.24 -3.98 16 21 C -0.22 -4.37 10.89 22.13 0.24 -4.13 16 22 C -0.03 -0.57 12.08 67.01 0.81 0.24 16 23 O -0.19 -6.30 10.67 -6.42 -0.07 -6.37 16 24 N -0.27 -8.68 12.56 -48.44 -0.61 -9.29 16 25 N -0.38 -10.08 4.04 -366.11 -1.48 -11.56 16 26 C 0.09 1.12 11.28 127.77 1.44 2.56 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.09 2.46 8.07 -2.39 -0.02 2.44 16 31 H 0.09 1.82 6.36 -2.39 -0.02 1.81 16 32 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 33 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 34 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 35 H 0.42 8.97 5.70 -92.71 -0.53 8.44 16 36 H 0.14 7.05 5.81 -2.91 -0.02 7.04 16 37 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.24 2.93 8.06 -2.91 -0.02 2.90 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.11 0.84 7.50 -2.39 -0.02 0.82 16 Total: -1.00 -83.87 363.11 5.15 -78.72 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.53 Total: 18.91 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 8.29 Total: 18.82 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.58 Total: -124.64 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.12 Total: -38.73 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -83.87 5.15 -78.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649773694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.247 kcal (2) G-P(sol) polarization free energy of solvation -83.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds