Wall clock time and date at job start Tue Mar 31 2020 13:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47118 * 2 1 4 4 N 1.46499 * 109.47312 * 120.00379 * 2 1 3 5 5 C 1.39680 * 119.99643 * 275.00124 * 4 2 1 6 6 C 1.39332 * 119.95583 * 0.02562 * 5 4 2 7 7 C 1.38487 * 120.42395 * 179.97438 * 6 5 4 8 8 C 1.37688 * 120.32551 * 359.97354 * 7 6 5 9 9 C 1.40748 * 119.89113 * 0.02623 * 8 7 6 10 10 C 1.41407 * 120.20688 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00121 * 24.33154 * 10 9 8 12 12 C 1.39930 * 120.00296 * 204.33380 * 10 9 8 13 13 N 1.30832 * 119.99659 * 17.73826 * 12 10 9 14 14 Si 1.86796 * 120.00299 * 197.73411 * 12 10 9 15 15 H 1.48496 * 109.47187 * 90.00159 * 14 12 10 16 16 H 1.48504 * 109.47261 * 210.00086 * 14 12 10 17 17 H 1.48504 * 109.46994 * 329.99999 * 14 12 10 18 18 C 1.38281 * 119.94606 * 179.72038 * 5 4 2 19 19 C 1.50698 * 109.46841 * 240.00521 * 2 1 3 20 20 N 1.31272 * 120.06031 * 284.99650 * 19 2 1 21 21 C 1.32574 * 122.78203 * 180.02562 * 20 19 2 22 22 C 1.36215 * 121.87351 * 0.02562 * 21 20 19 23 23 C 1.40653 * 118.66217 * 359.97438 * 22 21 20 24 24 C 1.40235 * 122.22133 * 179.97438 * 23 22 21 25 25 C 1.36215 * 119.47940 * 180.02562 * 24 23 22 26 26 C 1.39383 * 121.02425 * 0.04248 * 25 24 23 27 27 C 1.36163 * 121.08997 * 359.97438 * 26 25 24 28 28 C 1.40382 * 119.51485 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47205 * 59.99763 * 1 2 3 30 30 H 1.08996 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47483 * 299.99898 * 1 2 3 32 32 H 0.96999 * 119.99940 * 94.99452 * 4 2 1 33 33 H 1.07998 * 119.78913 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.83728 * 179.97438 * 7 6 5 35 35 H 1.07991 * 120.05090 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00050 * 179.97438 * 13 12 10 37 37 H 1.08000 * 120.16504 * 0.02764 * 18 5 4 38 38 H 1.07997 * 119.06714 * 179.97438 * 21 20 19 39 39 H 1.07992 * 120.66608 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.26012 * 0.04571 * 24 23 22 41 41 H 1.08000 * 119.48690 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.45415 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.24218 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1517 0.0061 2.3993 6 6 1.8195 1.3579 2.4610 7 6 1.9475 2.0580 3.6490 8 6 2.4044 1.4250 4.7832 9 6 2.7438 0.0599 4.7361 10 6 3.2132 -0.5969 5.8971 11 1 2.9573 -0.2150 6.8744 12 6 4.0092 -1.7417 5.7798 13 7 4.6055 -2.0105 4.6467 14 14 4.2207 -2.8861 7.2410 15 1 3.1592 -3.9241 7.2145 16 1 5.5529 -3.5385 7.1701 17 1 4.1183 -2.1053 8.5001 18 6 2.6073 -0.6482 3.5291 19 6 2.0322 -0.7103 -1.2305 20 7 1.9742 -2.0197 -1.3037 21 6 2.4006 -2.6993 -2.3591 22 6 2.9329 -2.0775 -3.4479 23 6 3.0285 -0.6742 -3.4438 24 6 3.5640 0.0419 -4.5240 25 6 3.6303 1.4010 -4.4604 26 6 3.1749 2.0907 -3.3381 27 6 2.6494 1.4280 -2.2709 28 6 2.5637 0.0271 -2.3005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6318 1.1525 33 1 1.4599 1.8629 1.5767 34 1 1.6877 3.1056 3.6860 35 1 2.5021 1.9751 5.7073 36 1 5.1577 -2.8039 4.5655 37 1 2.8609 -1.6971 3.4836 38 1 2.3246 -3.7766 -2.3552 39 1 3.2747 -2.6504 -4.2971 40 1 3.9209 -0.4800 -5.3996 41 1 4.0424 1.9527 -5.2924 42 1 3.2399 3.1684 -3.3144 43 1 2.3009 1.9762 -1.4081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652482765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:20 Heat of formation + Delta-G solvation = 74.299208 kcal Electronic energy + Delta-G solvation = -25215.204619 eV Core-core repulsion = 21803.389763 eV Total energy + Delta-G solvation = -3411.814856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05656 -38.06778 -37.38869 -35.71722 -33.56843 -32.66743 -31.39006 -30.50696 -29.43681 -29.15452 -26.98942 -25.13466 -24.57479 -23.73159 -23.03254 -21.25924 -20.59966 -19.59729 -17.86303 -17.78958 -17.00591 -16.50888 -15.81608 -15.13972 -14.94191 -14.75876 -14.56925 -14.35262 -13.86383 -13.79712 -13.72013 -13.14553 -12.91725 -12.67300 -12.56043 -12.18026 -12.07644 -11.97735 -11.77014 -11.63720 -11.42459 -11.12795 -10.99916 -10.74791 -10.48447 -10.35105 -10.18607 -9.59337 -9.48393 -9.37732 -9.20571 -9.17958 -8.72847 -8.13986 -7.25904 -6.67455 -6.10583 -4.25872 0.24793 0.80184 1.79589 2.91522 2.95404 3.13957 3.17419 3.28412 3.38867 3.93976 4.02404 4.16635 4.24375 4.42469 4.63490 4.67880 4.77611 4.84288 5.00058 5.05258 5.21207 5.26319 5.48557 5.55665 5.63521 5.72632 5.83871 5.90498 5.92811 5.94885 6.15042 6.25679 6.25987 6.32081 6.43342 6.56324 6.65297 6.70327 6.93335 7.15993 7.19292 7.44303 7.50697 7.85223 7.99318 8.02279 8.16814 8.23641 8.54955 8.80052 8.90250 9.07157 9.18007 10.31273 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.003296 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.296071 B = 8494.205286 C = 9297.158402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.206 3.794 3 H 0.091 0.909 4 N -0.745 5.745 5 C 0.219 3.781 6 C -0.303 4.303 7 C -0.065 4.065 8 C -0.258 4.258 9 C 0.140 3.860 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.078 3.922 13 N -0.791 5.791 14 Si 0.904 3.096 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.263 1.263 18 C -0.229 4.229 19 C 0.182 3.818 20 N -0.480 5.480 21 C 0.087 3.913 22 C -0.168 4.168 23 C -0.021 4.021 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.125 4.125 27 C -0.081 4.081 28 C -0.104 4.104 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.277 0.723 37 H 0.117 0.883 38 H 0.153 0.847 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 2.137 -18.432 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.099 3.901 3 H 0.108 0.892 4 N -0.379 5.379 5 C 0.120 3.880 6 C -0.325 4.325 7 C -0.084 4.084 8 C -0.279 4.279 9 C 0.137 3.863 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.140 4.140 13 N -0.417 5.417 14 Si 0.729 3.271 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.253 4.253 19 C 0.029 3.971 20 N -0.188 5.188 21 C -0.057 4.057 22 C -0.188 4.188 23 C -0.027 4.027 24 C -0.136 4.136 25 C -0.116 4.116 26 C -0.143 4.143 27 C -0.101 4.101 28 C -0.106 4.106 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.233 0.767 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.134 0.866 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.857 1.502 -18.015 18.302 hybrid contribution 0.754 -0.543 -0.277 0.970 sum -2.102 0.959 -18.292 18.438 Atomic orbital electron populations 1.22269 0.95069 1.02770 1.01918 1.19558 0.93736 0.95438 0.81413 0.89177 1.44408 1.75386 1.12042 1.06080 1.17646 0.94371 0.91001 0.84986 1.19867 1.21217 0.93747 0.97717 1.20266 0.98196 0.96754 0.93191 1.20848 1.14625 0.95278 0.97122 1.17315 0.86706 0.90035 0.92257 1.19559 1.27592 1.08346 0.93996 0.90602 1.25874 0.93678 0.97593 0.96809 1.69870 1.21728 1.24023 1.26048 0.86389 0.78041 0.80475 0.82208 1.19396 1.20502 1.18714 1.20720 1.12445 1.00090 0.92057 1.21958 0.91422 0.89606 0.94089 1.67179 1.16368 1.08798 1.26451 1.22207 0.94534 1.00283 0.88667 1.21849 1.02700 0.93626 1.00648 1.18159 0.96951 0.93719 0.93828 1.20928 1.00404 0.94448 0.97796 1.20989 0.98148 0.94404 0.98076 1.20933 0.99220 1.00493 0.93643 1.21193 0.97340 0.92671 0.98846 1.18809 1.01696 0.94903 0.95227 0.92944 0.91967 0.90855 0.76732 0.89648 0.89690 0.89468 0.91215 0.86562 0.82994 0.84662 0.85285 0.85665 0.85443 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.40 37.16 0.35 -2.05 16 2 C 0.21 3.38 2.39 -69.09 -0.17 3.22 16 3 H 0.09 1.44 4.17 -51.93 -0.22 1.23 16 4 N -0.75 -15.00 5.23 -53.34 -0.28 -15.28 16 5 C 0.22 5.14 6.63 -83.86 -0.56 4.59 16 6 C -0.30 -6.76 8.85 -39.08 -0.35 -7.11 16 7 C -0.07 -1.50 10.02 -39.69 -0.40 -1.89 16 8 C -0.26 -6.55 9.79 -38.83 -0.38 -6.93 16 9 C 0.14 3.85 5.57 -106.85 -0.60 3.25 16 10 C -0.46 -12.73 9.05 -37.74 -0.34 -13.07 16 11 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 12 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 13 N -0.79 -21.13 10.96 55.55 0.61 -20.52 16 14 Si 0.90 19.28 29.59 -169.99 -5.03 14.25 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 C -0.23 -6.10 8.53 -38.67 -0.33 -6.43 16 19 C 0.18 2.83 5.78 -82.02 -0.47 2.35 16 20 N -0.48 -7.52 9.54 -9.39 -0.09 -7.61 16 21 C 0.09 1.11 11.07 -17.96 -0.20 0.91 16 22 C -0.17 -1.90 9.88 -39.40 -0.39 -2.29 16 23 C -0.02 -0.27 5.75 -106.81 -0.61 -0.88 16 24 C -0.12 -1.16 9.81 -39.56 -0.39 -1.55 16 25 C -0.10 -0.88 9.95 -39.88 -0.40 -1.27 16 26 C -0.12 -1.24 9.94 -39.90 -0.40 -1.63 16 27 C -0.08 -0.98 9.35 -39.52 -0.37 -1.35 16 28 C -0.10 -1.45 5.74 -106.86 -0.61 -2.06 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 32 H 0.40 8.23 8.07 -40.82 -0.33 7.90 16 33 H 0.09 1.67 6.07 -52.49 -0.32 1.35 16 34 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 37 H 0.12 3.24 6.16 -52.49 -0.32 2.91 16 38 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.14 1.54 6.16 -52.49 -0.32 1.22 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -30.25 356.52 -11.38 -41.62 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.27 Total: 14.42 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -6.69 Total: -32.26 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.24 Total: -43.40 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.25 -11.38 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652482765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.922 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds