Wall clock time and date at job start Tue Mar 31 2020 13:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47118 * 2 1 4 4 N 1.46499 * 109.47312 * 120.00379 * 2 1 3 5 5 C 1.39680 * 119.99643 * 275.00124 * 4 2 1 6 6 C 1.39332 * 119.95583 * 0.02562 * 5 4 2 7 7 C 1.38487 * 120.42395 * 179.97438 * 6 5 4 8 8 C 1.37688 * 120.32551 * 359.97354 * 7 6 5 9 9 C 1.40748 * 119.89113 * 0.02623 * 8 7 6 10 10 C 1.41407 * 120.20688 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00121 * 24.33154 * 10 9 8 12 12 C 1.39930 * 120.00296 * 204.33380 * 10 9 8 13 13 N 1.30832 * 119.99659 * 17.73826 * 12 10 9 14 14 Si 1.86796 * 120.00299 * 197.73411 * 12 10 9 15 15 H 1.48496 * 109.47187 * 90.00159 * 14 12 10 16 16 H 1.48504 * 109.47261 * 210.00086 * 14 12 10 17 17 H 1.48504 * 109.46994 * 329.99999 * 14 12 10 18 18 C 1.38281 * 119.94606 * 179.72038 * 5 4 2 19 19 C 1.50698 * 109.46841 * 240.00521 * 2 1 3 20 20 N 1.31272 * 120.06031 * 284.99650 * 19 2 1 21 21 C 1.32574 * 122.78203 * 180.02562 * 20 19 2 22 22 C 1.36215 * 121.87351 * 0.02562 * 21 20 19 23 23 C 1.40653 * 118.66217 * 359.97438 * 22 21 20 24 24 C 1.40235 * 122.22133 * 179.97438 * 23 22 21 25 25 C 1.36215 * 119.47940 * 180.02562 * 24 23 22 26 26 C 1.39383 * 121.02425 * 0.04248 * 25 24 23 27 27 C 1.36163 * 121.08997 * 359.97438 * 26 25 24 28 28 C 1.40382 * 119.51485 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47205 * 59.99763 * 1 2 3 30 30 H 1.08996 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47483 * 299.99898 * 1 2 3 32 32 H 0.96999 * 119.99940 * 94.99452 * 4 2 1 33 33 H 1.07998 * 119.78913 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.83728 * 179.97438 * 7 6 5 35 35 H 1.07991 * 120.05090 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00050 * 179.97438 * 13 12 10 37 37 H 1.08000 * 120.16504 * 0.02764 * 18 5 4 38 38 H 1.07997 * 119.06714 * 179.97438 * 21 20 19 39 39 H 1.07992 * 120.66608 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.26012 * 0.04571 * 24 23 22 41 41 H 1.08000 * 119.48690 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.45415 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.24218 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1517 0.0061 2.3993 6 6 1.8195 1.3579 2.4610 7 6 1.9475 2.0580 3.6490 8 6 2.4044 1.4250 4.7832 9 6 2.7438 0.0599 4.7361 10 6 3.2132 -0.5969 5.8971 11 1 2.9573 -0.2150 6.8744 12 6 4.0092 -1.7417 5.7798 13 7 4.6055 -2.0105 4.6467 14 14 4.2207 -2.8861 7.2410 15 1 3.1592 -3.9241 7.2145 16 1 5.5529 -3.5385 7.1701 17 1 4.1183 -2.1053 8.5001 18 6 2.6073 -0.6482 3.5291 19 6 2.0322 -0.7103 -1.2305 20 7 1.9742 -2.0197 -1.3037 21 6 2.4006 -2.6993 -2.3591 22 6 2.9329 -2.0775 -3.4479 23 6 3.0285 -0.6742 -3.4438 24 6 3.5640 0.0419 -4.5240 25 6 3.6303 1.4010 -4.4604 26 6 3.1749 2.0907 -3.3381 27 6 2.6494 1.4280 -2.2709 28 6 2.5637 0.0271 -2.3005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6318 1.1525 33 1 1.4599 1.8629 1.5767 34 1 1.6877 3.1056 3.6860 35 1 2.5021 1.9751 5.7073 36 1 5.1577 -2.8039 4.5655 37 1 2.8609 -1.6971 3.4836 38 1 2.3246 -3.7766 -2.3552 39 1 3.2747 -2.6504 -4.2971 40 1 3.9209 -0.4800 -5.3996 41 1 4.0424 1.9527 -5.2924 42 1 3.2399 3.1684 -3.3144 43 1 2.3009 1.9762 -1.4081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652482765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:19 Heat of formation + Delta-G solvation = 58.976024 kcal Electronic energy + Delta-G solvation = -25215.869082 eV Core-core repulsion = 21803.389763 eV Total energy + Delta-G solvation = -3412.479319 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.98986 -39.72328 -38.40573 -37.18459 -35.35879 -33.96063 -32.34458 -31.69408 -31.33754 -30.18896 -28.68155 -27.09487 -25.61094 -24.61918 -24.03775 -22.99417 -22.10379 -21.14975 -19.16558 -18.82707 -18.44805 -17.72473 -17.22147 -16.55996 -16.51421 -16.10149 -15.70735 -15.54488 -15.11164 -14.99644 -14.65731 -14.53548 -14.34015 -14.21754 -13.96980 -13.73620 -13.40620 -13.08832 -12.96548 -12.92718 -12.74052 -12.68930 -12.62478 -12.37007 -12.08372 -11.72736 -11.51327 -11.26796 -11.14690 -11.04129 -10.61230 -10.37118 -10.05986 -9.22969 -9.00587 -8.61349 -7.90261 -6.30913 -0.63884 -0.06961 0.91687 1.09758 1.36174 1.37421 1.50680 1.59070 2.09568 2.22766 2.73138 2.83228 3.09929 3.12598 3.54032 3.73260 3.84520 3.88691 4.00049 4.15171 4.20981 4.31012 4.34923 4.46789 4.49844 4.57926 4.70068 4.78424 4.81687 4.84907 4.92975 5.03377 5.05908 5.13988 5.20315 5.26323 5.32744 5.44744 5.47635 5.48966 5.60638 5.67545 5.92293 5.97201 6.12791 6.23425 6.29163 6.59458 6.95429 6.96501 7.08181 7.08492 7.25276 8.39043 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.003296 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.296071 B = 8494.205286 C = 9297.158402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.205 3.795 3 H 0.095 0.905 4 N -0.743 5.743 5 C 0.223 3.777 6 C -0.299 4.299 7 C -0.060 4.060 8 C -0.285 4.285 9 C 0.110 3.890 10 C -0.504 4.504 11 H 0.073 0.927 12 C 0.036 3.964 13 N -0.824 5.824 14 Si 0.980 3.020 15 H -0.265 1.265 16 H -0.269 1.269 17 H -0.257 1.257 18 C -0.260 4.260 19 C 0.154 3.846 20 N -0.508 5.508 21 C 0.057 3.943 22 C -0.150 4.150 23 C -0.045 4.045 24 C -0.116 4.116 25 C -0.097 4.097 26 C -0.114 4.114 27 C -0.110 4.110 28 C -0.119 4.119 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.391 0.609 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.283 0.717 37 H 0.093 0.907 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 3.112 -21.266 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.099 3.901 3 H 0.113 0.887 4 N -0.374 5.374 5 C 0.122 3.878 6 C -0.321 4.321 7 C -0.078 4.078 8 C -0.305 4.305 9 C 0.107 3.893 10 C -0.534 4.534 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.450 5.450 14 Si 0.800 3.200 15 H -0.189 1.189 16 H -0.193 1.193 17 H -0.181 1.181 18 C -0.284 4.284 19 C 0.002 3.998 20 N -0.217 5.217 21 C -0.086 4.086 22 C -0.169 4.169 23 C -0.051 4.051 24 C -0.133 4.133 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.122 4.122 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.189 0.811 39 H 0.189 0.811 40 H 0.178 0.822 41 H 0.179 0.821 42 H 0.171 0.829 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.510 2.492 -20.888 21.185 hybrid contribution 0.647 -0.750 0.332 1.045 sum -1.863 1.742 -20.556 20.713 Atomic orbital electron populations 1.22155 0.94023 1.02238 1.02628 1.19708 0.94474 0.95403 0.80488 0.88702 1.44541 1.74713 1.11793 1.06396 1.17776 0.92974 0.91739 0.85334 1.20232 1.19931 0.93137 0.98816 1.20663 0.96382 0.98476 0.92296 1.21020 1.16202 0.94848 0.98452 1.17694 0.87485 0.91309 0.92825 1.19814 1.29311 1.10272 0.93991 0.90929 1.26732 0.92716 0.98552 0.99869 1.69946 1.22260 1.24698 1.28123 0.85253 0.78346 0.78005 0.78348 1.18944 1.19315 1.18085 1.20624 1.15029 0.99347 0.93445 1.21731 0.93735 0.89905 0.94427 1.67062 1.17216 1.09290 1.28145 1.22588 0.95862 1.01254 0.88898 1.22251 1.00233 0.93617 1.00799 1.18547 0.97722 0.94441 0.94350 1.21323 0.99240 0.95013 0.97759 1.21443 0.97087 0.94423 0.98621 1.21343 0.96980 1.01935 0.92906 1.21304 0.99416 0.92148 1.00121 1.18977 1.01945 0.95835 0.95400 0.90361 0.93136 0.91797 0.77523 0.86377 0.85972 0.89135 0.90668 0.88913 0.81143 0.81087 0.82215 0.82141 0.82852 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.40 71.98 0.68 -3.82 16 2 C 0.21 6.80 2.39 44.24 0.11 6.90 16 3 H 0.10 3.00 4.17 -2.39 -0.01 2.99 16 4 N -0.74 -30.98 5.23 -322.69 -1.69 -32.67 16 5 C 0.22 10.78 6.63 38.16 0.25 11.03 16 6 C -0.30 -13.17 8.85 22.59 0.20 -12.97 16 7 C -0.06 -2.69 10.02 22.20 0.22 -2.47 16 8 C -0.28 -14.81 9.79 22.75 0.22 -14.59 16 9 C 0.11 6.33 5.57 -21.31 -0.12 6.21 16 10 C -0.50 -28.98 9.05 23.46 0.21 -28.77 16 11 H 0.07 4.03 7.91 -2.91 -0.02 4.01 16 12 C 0.04 1.92 5.14 85.25 0.44 2.36 16 13 N -0.82 -46.03 10.96 21.82 0.24 -45.79 16 14 Si 0.98 40.71 29.59 68.60 2.03 42.74 16 15 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 18 C -0.26 -14.60 8.53 22.86 0.20 -14.41 16 19 C 0.15 4.84 5.78 43.17 0.25 5.09 16 20 N -0.51 -16.31 9.54 -183.62 -1.75 -18.06 16 21 C 0.06 1.44 11.07 84.11 0.93 2.37 16 22 C -0.15 -3.08 9.88 22.39 0.22 -2.85 16 23 C -0.05 -1.03 5.75 -21.29 -0.12 -1.15 16 24 C -0.12 -1.84 9.81 22.28 0.22 -1.62 16 25 C -0.10 -1.34 9.95 22.07 0.22 -1.13 16 26 C -0.11 -1.89 9.94 22.06 0.22 -1.68 16 27 C -0.11 -2.50 9.35 22.31 0.21 -2.29 16 28 C -0.12 -3.22 5.74 -21.31 -0.12 -3.34 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.99 7.69 -2.39 -0.02 1.97 16 32 H 0.39 17.17 8.07 -92.71 -0.75 16.42 16 33 H 0.12 4.38 6.07 -2.91 -0.02 4.37 16 34 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 35 H 0.09 4.49 8.06 -2.92 -0.02 4.47 16 36 H 0.28 14.40 8.30 -92.71 -0.77 13.63 16 37 H 0.09 5.54 6.16 -2.91 -0.02 5.53 16 38 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.14 2.94 6.16 -2.91 -0.02 2.92 16 Total: -1.00 -70.05 356.52 3.56 -66.50 By element: Atomic # 1 Polarization: 44.11 SS G_CDS: 0.30 Total: 44.40 kcal Atomic # 6 Polarization: -61.56 SS G_CDS: 4.43 Total: -57.13 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -3.20 Total: -96.52 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -70.05 3.56 -66.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652482765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.474 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds