Wall clock time and date at job start Tue Mar 31 2020 13:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47024 * 2 1 4 4 N 1.46491 * 109.47311 * 239.99696 * 2 1 3 5 5 C 1.38864 * 120.00028 * 84.99794 * 4 2 1 6 6 C 1.39565 * 119.84275 * 180.02562 * 5 4 2 7 7 C 1.36342 * 120.16238 * 179.72339 * 6 5 4 8 8 C 1.40888 * 119.83186 * 0.25951 * 7 6 5 9 9 C 1.41135 * 120.15268 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00157 * 204.60050 * 9 8 7 11 11 C 1.39865 * 120.00289 * 24.60189 * 9 8 7 12 12 N 1.30911 * 119.99640 * 17.97744 * 11 9 8 13 13 Si 1.86797 * 120.00221 * 197.97125 * 11 9 8 14 14 H 1.48497 * 109.47206 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46936 * 120.00235 * 13 11 9 16 16 H 1.48498 * 109.47220 * 240.00054 * 13 11 9 17 17 C 1.40889 * 119.69394 * 359.97438 * 8 7 6 18 18 C 1.36343 * 119.83140 * 0.02562 * 17 8 7 19 19 C 1.50699 * 109.46968 * 119.99732 * 2 1 3 20 20 N 1.31271 * 120.05888 * 74.72632 * 19 2 1 21 21 C 1.32576 * 122.77685 * 179.69974 * 20 19 2 22 22 C 1.36200 * 121.87678 * 0.57832 * 21 20 19 23 23 C 1.40664 * 118.66564 * 359.72833 * 22 21 20 24 24 C 1.40235 * 122.22205 * 179.97438 * 23 22 21 25 25 C 1.36211 * 119.47569 * 180.02562 * 24 23 22 26 26 C 1.39378 * 121.02390 * 0.03899 * 25 24 23 27 27 C 1.36166 * 121.09351 * 359.97438 * 26 25 24 28 28 C 1.40377 * 119.51320 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47231 * 60.00007 * 1 2 3 30 30 H 1.09000 * 109.47663 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47429 * 300.00166 * 1 2 3 32 32 H 0.97003 * 120.00479 * 265.00302 * 4 2 1 33 33 H 1.07997 * 119.91739 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.08828 * 180.27427 * 7 6 5 35 35 H 0.97002 * 119.99580 * 179.97438 * 12 11 9 36 36 H 1.08000 * 120.08318 * 179.97438 * 17 8 7 37 37 H 1.08005 * 119.91617 * 180.02562 * 18 17 8 38 38 H 1.08002 * 119.05899 * 180.30781 * 21 20 19 39 39 H 1.07998 * 120.66926 * 179.69885 * 22 21 20 40 40 H 1.07999 * 120.26085 * 0.02562 * 24 23 22 41 41 H 1.08001 * 119.48618 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.45483 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.24520 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1960 5 6 2.1509 0.0020 -2.3923 6 6 2.6160 -0.6593 -3.5299 7 6 2.7433 0.0130 -4.7091 8 6 2.4093 1.3801 -4.7761 9 6 2.5380 2.0826 -5.9934 10 1 2.6753 3.1539 -5.9868 11 6 2.4879 1.3915 -7.2084 12 7 1.9816 0.1851 -7.2547 13 14 3.1431 2.1899 -8.7648 14 1 3.6589 3.5455 -8.4464 15 1 4.2422 1.3607 -9.3215 16 1 2.0498 2.2977 -9.7639 17 6 1.9451 2.0425 -3.6224 18 6 1.8228 1.3574 -2.4500 19 6 2.0322 -0.7104 1.2305 20 7 1.9692 -2.0194 1.3058 21 6 2.4003 -2.6993 2.3592 22 6 2.9318 -2.0776 3.4482 23 6 3.0273 -0.6742 3.4443 24 6 3.5611 0.0419 4.5254 25 6 3.6265 1.4010 4.4623 26 6 3.1703 2.0908 3.3403 27 6 2.6458 1.4282 2.2726 28 6 2.5631 0.0271 2.3008 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 2.8710 -1.7074 -3.4771 34 1 3.0991 -0.5010 -5.5897 35 1 1.9464 -0.2940 -8.0974 36 1 1.6877 3.0904 -3.6665 37 1 1.4667 1.8636 -1.5649 38 1 2.3239 -3.7766 2.3553 39 1 3.2726 -2.6505 4.2979 40 1 3.9176 -0.4800 5.4011 41 1 4.0380 1.9527 5.2946 42 1 3.2339 3.1687 3.3174 43 1 2.2968 1.9764 1.4101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659379829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:25 Heat of formation + Delta-G solvation = 77.947006 kcal Electronic energy + Delta-G solvation = -24931.081366 eV Core-core repulsion = 21519.424691 eV Total energy + Delta-G solvation = -3411.656676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.11591 -38.19109 -37.47202 -35.82137 -33.64478 -32.46544 -31.43125 -30.52992 -29.56290 -28.96692 -28.01746 -24.94376 -24.16338 -23.79215 -22.99394 -21.47120 -20.50431 -19.75768 -17.93348 -17.76550 -17.14926 -16.51981 -15.96312 -15.43308 -14.94971 -14.86682 -14.62390 -14.10368 -13.95277 -13.82235 -13.66772 -13.19857 -12.94057 -12.68802 -12.46203 -12.20242 -12.08412 -11.98115 -11.77976 -11.71099 -11.46362 -11.28130 -11.02453 -10.78181 -10.68444 -10.45957 -10.21890 -9.65485 -9.52763 -9.27003 -9.25308 -9.19452 -8.52724 -8.19494 -7.45288 -6.61531 -6.34514 -3.99856 0.19086 0.74312 1.73938 2.89357 2.93369 3.13408 3.17654 3.22847 3.37837 3.88682 4.08010 4.10847 4.20885 4.37328 4.59409 4.62478 4.78994 4.80257 4.94766 5.00366 5.15708 5.21510 5.43090 5.52287 5.59172 5.68407 5.79236 5.86936 5.88061 5.92044 6.11872 6.20842 6.21622 6.28930 6.35224 6.41109 6.57284 6.64617 6.90219 7.10287 7.23631 7.34264 7.63038 7.70567 7.83184 7.93470 8.18885 8.37917 8.53414 8.74174 8.85854 9.09526 9.19140 10.40487 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.002695 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.505506 B =10387.406015 C =10977.752111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.209 3.791 3 H 0.088 0.912 4 N -0.746 5.746 5 C 0.096 3.904 6 C -0.161 4.161 7 C -0.121 4.121 8 C 0.074 3.926 9 C -0.467 4.467 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.807 5.807 13 Si 0.901 3.099 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.277 1.277 17 C -0.188 4.188 18 C -0.163 4.163 19 C 0.182 3.818 20 N -0.481 5.481 21 C 0.085 3.915 22 C -0.168 4.168 23 C -0.022 4.022 24 C -0.118 4.118 25 C -0.096 4.096 26 C -0.124 4.124 27 C -0.081 4.081 28 C -0.104 4.104 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.393 0.607 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.275 0.725 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -1.386 21.436 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.101 3.899 3 H 0.106 0.894 4 N -0.382 5.382 5 C -0.001 4.001 6 C -0.183 4.183 7 C -0.141 4.141 8 C 0.071 3.929 9 C -0.498 4.498 10 H 0.090 0.910 11 C -0.141 4.141 12 N -0.435 5.435 13 Si 0.727 3.273 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.203 1.203 17 C -0.208 4.208 18 C -0.185 4.185 19 C 0.030 3.970 20 N -0.189 5.189 21 C -0.058 4.058 22 C -0.188 4.188 23 C -0.027 4.027 24 C -0.136 4.136 25 C -0.115 4.115 26 C -0.142 4.142 27 C -0.101 4.101 28 C -0.107 4.107 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.227 0.773 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.091 -2.027 20.719 20.847 hybrid contribution 0.676 0.266 0.072 0.730 sum 1.767 -1.761 20.791 20.941 Atomic orbital electron populations 1.22285 0.95208 1.02763 1.01920 1.19505 0.93705 0.95291 0.81412 0.89402 1.43859 1.76782 1.11564 1.05983 1.17348 1.05679 0.91627 0.85452 1.20037 1.07453 0.97855 0.92982 1.20924 1.01949 0.95533 0.95723 1.17492 0.90968 0.92126 0.92296 1.19389 1.45111 0.95131 0.90140 0.90955 1.25797 0.92956 0.94694 1.00642 1.69870 1.33620 1.12186 1.27796 0.86382 0.79259 0.80406 0.81295 1.18658 1.20004 1.20308 1.20545 1.07826 0.98628 0.93805 1.19857 1.08555 0.92697 0.97402 1.21986 0.91310 0.89596 0.94133 1.67184 1.16369 1.08826 1.26554 1.22201 0.94591 1.00258 0.88787 1.21850 1.02746 0.93631 1.00589 1.18166 0.96970 0.93713 0.93832 1.20930 1.00447 0.94455 0.97784 1.20998 0.98066 0.94405 0.98079 1.20949 0.99106 1.00553 0.93618 1.21203 0.97319 0.92667 0.98904 1.18813 1.01732 0.94903 0.95215 0.90882 0.91983 0.92987 0.77295 0.89524 0.86357 0.91405 0.89143 0.89473 0.83027 0.84679 0.85279 0.85636 0.85392 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.39 37.16 0.35 -2.01 16 2 C 0.21 3.23 2.39 -69.09 -0.16 3.06 16 3 H 0.09 1.33 4.14 -51.93 -0.22 1.11 16 4 N -0.75 -13.75 5.20 -53.16 -0.28 -14.03 16 5 C 0.10 2.10 6.65 -83.69 -0.56 1.55 16 6 C -0.16 -3.85 9.82 -39.77 -0.39 -4.24 16 7 C -0.12 -3.21 8.64 -39.26 -0.34 -3.55 16 8 C 0.07 2.01 5.57 -106.79 -0.60 1.41 16 9 C -0.47 -12.72 9.03 -37.87 -0.34 -13.07 16 10 H 0.07 1.91 7.91 -52.48 -0.41 1.49 16 11 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 12 N -0.81 -21.63 10.96 55.54 0.61 -21.02 16 13 Si 0.90 19.37 29.60 -169.99 -5.03 14.34 16 14 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 C -0.19 -4.62 9.74 -39.26 -0.38 -5.00 16 18 C -0.16 -3.60 8.75 -39.77 -0.35 -3.95 16 19 C 0.18 2.64 5.78 -82.02 -0.47 2.16 16 20 N -0.48 -6.93 9.55 -9.39 -0.09 -7.02 16 21 C 0.09 0.99 11.07 -17.96 -0.20 0.79 16 22 C -0.17 -1.73 9.88 -39.40 -0.39 -2.12 16 23 C -0.02 -0.25 5.75 -106.81 -0.61 -0.86 16 24 C -0.12 -1.08 9.81 -39.56 -0.39 -1.47 16 25 C -0.10 -0.81 9.95 -39.89 -0.40 -1.21 16 26 C -0.12 -1.16 9.94 -39.90 -0.40 -1.55 16 27 C -0.08 -0.92 9.35 -39.52 -0.37 -1.29 16 28 C -0.10 -1.36 5.74 -106.86 -0.61 -1.97 16 29 H 0.07 1.15 7.69 -51.93 -0.40 0.76 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.39 7.16 8.07 -40.82 -0.33 6.84 16 33 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 35 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 37 H 0.09 1.67 6.06 -52.48 -0.32 1.35 16 38 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.46 6.16 -52.49 -0.32 1.13 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -29.99 356.19 -11.38 -41.37 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.26 Total: 12.47 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -6.70 Total: -31.49 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.24 Total: -42.06 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.99 -11.38 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659379829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.316 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds