Wall clock time and date at job start Tue Mar 31 2020 13:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47024 * 2 1 4 4 N 1.46491 * 109.47311 * 239.99696 * 2 1 3 5 5 C 1.38864 * 120.00028 * 84.99794 * 4 2 1 6 6 C 1.39565 * 119.84275 * 180.02562 * 5 4 2 7 7 C 1.36342 * 120.16238 * 179.72339 * 6 5 4 8 8 C 1.40888 * 119.83186 * 0.25951 * 7 6 5 9 9 C 1.41135 * 120.15268 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00157 * 204.60050 * 9 8 7 11 11 C 1.39865 * 120.00289 * 24.60189 * 9 8 7 12 12 N 1.30911 * 119.99640 * 17.97744 * 11 9 8 13 13 Si 1.86797 * 120.00221 * 197.97125 * 11 9 8 14 14 H 1.48497 * 109.47206 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46936 * 120.00235 * 13 11 9 16 16 H 1.48498 * 109.47220 * 240.00054 * 13 11 9 17 17 C 1.40889 * 119.69394 * 359.97438 * 8 7 6 18 18 C 1.36343 * 119.83140 * 0.02562 * 17 8 7 19 19 C 1.50699 * 109.46968 * 119.99732 * 2 1 3 20 20 N 1.31271 * 120.05888 * 74.72632 * 19 2 1 21 21 C 1.32576 * 122.77685 * 179.69974 * 20 19 2 22 22 C 1.36200 * 121.87678 * 0.57832 * 21 20 19 23 23 C 1.40664 * 118.66564 * 359.72833 * 22 21 20 24 24 C 1.40235 * 122.22205 * 179.97438 * 23 22 21 25 25 C 1.36211 * 119.47569 * 180.02562 * 24 23 22 26 26 C 1.39378 * 121.02390 * 0.03899 * 25 24 23 27 27 C 1.36166 * 121.09351 * 359.97438 * 26 25 24 28 28 C 1.40377 * 119.51320 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47231 * 60.00007 * 1 2 3 30 30 H 1.09000 * 109.47663 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47429 * 300.00166 * 1 2 3 32 32 H 0.97003 * 120.00479 * 265.00302 * 4 2 1 33 33 H 1.07997 * 119.91739 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.08828 * 180.27427 * 7 6 5 35 35 H 0.97002 * 119.99580 * 179.97438 * 12 11 9 36 36 H 1.08000 * 120.08318 * 179.97438 * 17 8 7 37 37 H 1.08005 * 119.91617 * 180.02562 * 18 17 8 38 38 H 1.08002 * 119.05899 * 180.30781 * 21 20 19 39 39 H 1.07998 * 120.66926 * 179.69885 * 22 21 20 40 40 H 1.07999 * 120.26085 * 0.02562 * 24 23 22 41 41 H 1.08001 * 119.48618 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.45483 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.24520 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1960 5 6 2.1509 0.0020 -2.3923 6 6 2.6160 -0.6593 -3.5299 7 6 2.7433 0.0130 -4.7091 8 6 2.4093 1.3801 -4.7761 9 6 2.5380 2.0826 -5.9934 10 1 2.6753 3.1539 -5.9868 11 6 2.4879 1.3915 -7.2084 12 7 1.9816 0.1851 -7.2547 13 14 3.1431 2.1899 -8.7648 14 1 3.6589 3.5455 -8.4464 15 1 4.2422 1.3607 -9.3215 16 1 2.0498 2.2977 -9.7639 17 6 1.9451 2.0425 -3.6224 18 6 1.8228 1.3574 -2.4500 19 6 2.0322 -0.7104 1.2305 20 7 1.9692 -2.0194 1.3058 21 6 2.4003 -2.6993 2.3592 22 6 2.9318 -2.0776 3.4482 23 6 3.0273 -0.6742 3.4443 24 6 3.5611 0.0419 4.5254 25 6 3.6265 1.4010 4.4623 26 6 3.1703 2.0908 3.3403 27 6 2.6458 1.4282 2.2726 28 6 2.5631 0.0271 2.3008 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 2.8710 -1.7074 -3.4771 34 1 3.0991 -0.5010 -5.5897 35 1 1.9464 -0.2940 -8.0974 36 1 1.6877 3.0904 -3.6665 37 1 1.4667 1.8636 -1.5649 38 1 2.3239 -3.7766 2.3553 39 1 3.2726 -2.6505 4.2979 40 1 3.9176 -0.4800 5.4011 41 1 4.0380 1.9527 5.2946 42 1 3.2339 3.1687 3.3174 43 1 2.2968 1.9764 1.4101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659379829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:24 Heat of formation + Delta-G solvation = 63.099843 kcal Electronic energy + Delta-G solvation = -24931.725188 eV Core-core repulsion = 21519.424691 eV Total energy + Delta-G solvation = -3412.300497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97586 -39.84820 -38.40997 -37.25198 -35.28912 -33.76221 -32.34886 -31.83447 -31.13132 -30.16721 -29.71284 -26.44703 -25.42176 -24.61041 -24.04349 -23.04313 -22.20004 -21.14218 -19.19138 -18.74387 -18.62740 -17.62875 -17.36041 -16.93380 -16.33281 -15.80411 -15.68960 -15.49178 -15.10616 -14.99655 -14.64652 -14.51114 -14.26915 -14.20774 -13.87243 -13.71028 -13.50692 -13.25177 -12.95807 -12.93645 -12.73410 -12.66869 -12.63264 -12.46609 -12.22765 -11.70795 -11.50947 -11.15997 -11.14232 -11.03920 -10.49031 -10.28016 -10.04569 -9.38348 -8.98997 -8.53900 -8.15726 -5.99023 -0.62430 -0.05616 0.93040 1.11383 1.20382 1.41055 1.55408 1.59237 2.11034 2.28556 2.79183 2.86315 3.12308 3.14117 3.55804 3.75363 3.85570 3.87520 4.01518 4.16049 4.22290 4.32155 4.36588 4.45953 4.48514 4.49641 4.58674 4.72308 4.80623 4.86217 4.93502 5.04442 5.07048 5.15266 5.18903 5.27823 5.32994 5.43188 5.47254 5.49810 5.69236 5.75853 5.78113 5.92892 5.94153 6.20733 6.42361 6.69194 6.87501 7.02403 7.10463 7.13316 7.29896 8.50093 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.002695 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.505506 B =10387.406015 C =10977.752111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.208 3.792 3 H 0.092 0.908 4 N -0.741 5.741 5 C 0.116 3.884 6 C -0.177 4.177 7 C -0.141 4.141 8 C 0.036 3.964 9 C -0.503 4.503 10 H 0.069 0.931 11 C 0.030 3.970 12 N -0.843 5.843 13 Si 0.976 3.024 14 H -0.259 1.259 15 H -0.268 1.268 16 H -0.269 1.269 17 C -0.193 4.193 18 C -0.164 4.164 19 C 0.156 3.844 20 N -0.504 5.504 21 C 0.059 3.941 22 C -0.150 4.150 23 C -0.045 4.045 24 C -0.116 4.116 25 C -0.098 4.098 26 C -0.115 4.115 27 C -0.111 4.111 28 C -0.118 4.118 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.394 0.606 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.281 0.719 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 -0.816 24.573 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.101 3.899 3 H 0.110 0.890 4 N -0.375 5.375 5 C 0.017 3.983 6 C -0.199 4.199 7 C -0.161 4.161 8 C 0.033 3.967 9 C -0.535 4.535 10 H 0.087 0.913 11 C -0.181 4.181 12 N -0.471 5.471 13 Si 0.798 3.202 14 H -0.183 1.183 15 H -0.193 1.193 16 H -0.194 1.194 17 C -0.213 4.213 18 C -0.186 4.186 19 C 0.004 3.996 20 N -0.213 5.213 21 C -0.084 4.084 22 C -0.169 4.169 23 C -0.050 4.050 24 C -0.133 4.133 25 C -0.117 4.117 26 C -0.133 4.133 27 C -0.130 4.130 28 C -0.121 4.121 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.228 0.772 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.191 0.809 39 H 0.188 0.812 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.169 0.831 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.825 -1.465 23.905 24.019 hybrid contribution 0.448 0.041 -0.563 0.721 sum 2.273 -1.424 23.342 23.496 Atomic orbital electron populations 1.22180 0.94609 1.02278 1.02283 1.19611 0.94077 0.95374 0.80821 0.89047 1.43956 1.75998 1.11630 1.05898 1.17437 1.03029 0.91733 0.86119 1.20190 1.08074 0.98576 0.93026 1.20831 1.03409 0.95779 0.96050 1.17810 0.92683 0.92780 0.93415 1.19611 1.47318 0.95220 0.91322 0.91287 1.26631 0.92597 0.95231 1.03688 1.69940 1.34584 1.13607 1.28965 0.85251 0.78681 0.79349 0.76909 1.18294 1.19308 1.19397 1.20774 1.07288 0.99237 0.93997 1.20118 1.07892 0.92765 0.97793 1.21690 0.93634 0.89950 0.94309 1.67077 1.16993 1.09097 1.28167 1.22604 0.95641 1.01301 0.88889 1.22249 1.00349 0.93504 1.00833 1.18542 0.97693 0.94504 0.94266 1.21320 0.99261 0.94939 0.97809 1.21426 0.97157 0.94502 0.98566 1.21330 0.97104 1.01870 0.93017 1.21301 0.99349 0.92307 1.00061 1.18961 1.01998 0.95682 0.95454 0.92332 0.92876 0.90675 0.77203 0.88280 0.88350 0.90844 0.88229 0.86258 0.80934 0.81182 0.82257 0.82321 0.83110 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 9.39 71.98 0.68 -3.74 16 2 C 0.21 6.33 2.39 44.24 0.11 6.44 16 3 H 0.09 2.70 4.14 -2.39 -0.01 2.69 16 4 N -0.74 -27.28 5.20 -322.11 -1.67 -28.96 16 5 C 0.12 5.13 6.65 38.67 0.26 5.39 16 6 C -0.18 -8.66 9.82 22.15 0.22 -8.44 16 7 C -0.14 -7.80 8.64 22.48 0.19 -7.60 16 8 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 9 C -0.50 -28.58 9.03 23.38 0.21 -28.37 16 10 H 0.07 3.79 7.91 -2.91 -0.02 3.77 16 11 C 0.03 1.61 5.13 85.22 0.44 2.05 16 12 N -0.84 -46.93 10.96 21.82 0.24 -46.69 16 13 Si 0.98 40.72 29.60 68.60 2.03 42.75 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 15 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 16 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 17 C -0.19 -9.68 9.74 22.48 0.22 -9.46 16 18 C -0.16 -7.22 8.75 22.15 0.19 -7.03 16 19 C 0.16 4.43 5.78 43.17 0.25 4.68 16 20 N -0.50 -14.30 9.55 -183.62 -1.75 -16.05 16 21 C 0.06 1.28 11.07 84.11 0.93 2.21 16 22 C -0.15 -2.68 9.88 22.39 0.22 -2.46 16 23 C -0.04 -0.92 5.75 -21.28 -0.12 -1.04 16 24 C -0.12 -1.66 9.81 22.28 0.22 -1.44 16 25 C -0.10 -1.25 9.95 22.07 0.22 -1.03 16 26 C -0.12 -1.81 9.94 22.06 0.22 -1.59 16 27 C -0.11 -2.35 9.35 22.31 0.21 -2.14 16 28 C -0.12 -2.93 5.74 -21.31 -0.12 -3.05 16 29 H 0.06 1.82 7.69 -2.39 -0.02 1.81 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.39 14.45 8.07 -92.71 -0.75 13.70 16 33 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 35 H 0.28 14.25 8.30 -92.71 -0.77 13.48 16 36 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.12 4.43 6.06 -2.91 -0.02 4.41 16 38 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.14 2.76 6.16 -2.91 -0.02 2.74 16 Total: -1.00 -68.19 356.19 3.55 -64.64 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.30 Total: 39.02 kcal Atomic # 6 Polarization: -59.13 SS G_CDS: 4.42 Total: -54.71 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -3.19 Total: -91.69 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -68.19 3.55 -64.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659379829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.740 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds