Wall clock time and date at job start Tue Mar 31 2020 14:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35638 * 117.00388 * 2 1 4 4 C 1.40759 * 120.33103 * 0.20319 * 3 2 1 5 5 C 1.35011 * 120.04470 * 180.27731 * 4 3 2 6 6 N 1.36038 * 120.86060 * 359.49324 * 5 4 3 7 7 C 1.36662 * 120.88023 * 0.28047 * 6 5 4 8 8 C 1.37974 * 120.33077 * 179.97438 * 3 2 1 9 9 N 1.33332 * 108.60733 * 179.97438 * 7 6 5 10 10 C 1.32327 * 109.84969 * 359.97438 * 9 7 6 11 11 C 1.38503 * 108.26146 * 0.02562 * 10 9 7 12 12 C 1.41651 * 126.79181 * 180.02562 * 11 10 9 13 13 O 1.21792 * 120.00269 * 174.91888 * 12 11 10 14 14 N 1.34779 * 119.99703 * 354.91183 * 12 11 10 15 15 C 1.46495 * 120.00108 * 185.05356 * 14 12 11 16 16 C 1.53002 * 109.47219 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47238 * 65.00120 * 16 15 14 18 18 C 1.53001 * 109.46938 * 185.00007 * 16 15 14 19 19 N 1.46493 * 109.46872 * 304.99727 * 16 15 14 20 20 C 1.36937 * 119.99922 * 155.00364 * 19 16 15 21 21 H 1.07997 * 119.99928 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99953 * 180.02562 * 20 19 16 23 23 N 1.31615 * 120.00040 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99800 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47149 * 89.99577 * 24 22 20 26 26 H 1.48500 * 109.47397 * 209.99752 * 24 22 20 27 27 H 1.48507 * 109.47389 * 329.99846 * 24 22 20 28 28 H 1.09001 * 109.46767 * 300.00368 * 1 2 3 29 29 H 1.09005 * 109.46758 * 59.99802 * 1 2 3 30 30 H 1.08994 * 109.47586 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.97796 * 0.06989 * 4 3 2 32 32 H 1.07999 * 119.56919 * 179.76731 * 5 4 3 33 33 H 1.07998 * 120.39625 * 0.02562 * 8 3 2 34 34 H 1.07995 * 125.86866 * 179.97438 * 10 9 7 35 35 H 0.97004 * 119.99710 * 5.05934 * 14 12 11 36 36 H 1.09005 * 109.46950 * 300.00589 * 15 14 12 37 37 H 1.09001 * 109.47457 * 60.00104 * 15 14 12 38 38 H 1.09001 * 109.47064 * 60.00007 * 18 16 15 39 39 H 1.09001 * 109.47262 * 179.97438 * 18 16 15 40 40 H 1.09005 * 109.47146 * 299.99664 * 18 16 15 41 41 H 0.97004 * 120.00303 * 335.00096 * 19 16 15 42 42 H 0.97002 * 119.99933 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2852 2.3935 0.0043 5 6 1.9042 3.5933 -0.0014 6 7 3.2619 3.6781 -0.0010 7 6 4.0350 2.5511 -0.0005 8 6 3.4223 1.2886 0.0005 9 7 5.3177 2.9152 -0.0007 10 6 5.4101 4.2352 -0.0018 11 6 4.1283 4.7600 -0.0018 12 6 3.7731 6.1313 -0.0033 13 8 2.6033 6.4572 -0.0965 14 7 4.7296 7.0753 0.0985 15 6 4.3562 8.4876 0.2085 16 6 5.6207 9.3431 0.3095 17 1 6.1866 9.2660 -0.6188 18 6 5.2308 10.8030 0.5493 19 7 6.4438 8.8680 1.4243 20 6 7.7947 9.0921 1.4219 21 1 8.2533 9.6187 0.5981 22 6 8.5749 8.6415 2.4780 23 7 8.0160 7.9993 3.4818 24 14 10.4178 8.9466 2.4745 25 1 10.7063 10.2426 3.1395 26 1 11.1023 7.8511 3.2070 27 1 10.9099 8.9886 1.0740 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2064 2.3428 0.0088 32 1 1.3137 4.4976 -0.0018 33 1 4.0219 0.3903 0.0005 34 1 6.3273 4.8053 -0.0019 35 1 5.6653 6.8195 0.0989 36 1 3.7876 8.7828 -0.6734 37 1 3.7461 8.6338 1.0999 38 1 4.6648 10.8801 1.4777 39 1 6.1316 11.4125 0.6217 40 1 4.6183 11.1565 -0.2802 41 1 6.0320 8.3948 2.1641 42 1 8.5611 7.6848 4.2200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690602271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:27 Heat of formation + Delta-G solvation = 30.748990 kcal Electronic energy + Delta-G solvation = -25959.060192 eV Core-core repulsion = 22134.507594 eV Total energy + Delta-G solvation = -3824.552598 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.95406 -39.97903 -39.11921 -36.65487 -36.31819 -33.61931 -33.26085 -31.95156 -30.62500 -29.59694 -28.65698 -27.56294 -25.75390 -24.14331 -23.70015 -23.10888 -22.13231 -20.37520 -20.17645 -18.37613 -18.22952 -17.38001 -17.06223 -16.52412 -16.44302 -15.88351 -15.58979 -15.18042 -15.05445 -14.47276 -14.37463 -14.14913 -13.74700 -13.64113 -13.45884 -13.01797 -12.91626 -12.47517 -12.24923 -12.11972 -11.99599 -11.80811 -11.75871 -11.38789 -10.87987 -10.76020 -10.41808 -10.34334 -10.23015 -10.02200 -9.73615 -9.72142 -9.11867 -8.99494 -8.73550 -7.74243 -7.05540 -5.81708 -3.12493 0.47268 0.71751 2.21237 2.27013 2.65825 3.30093 3.41206 3.46921 3.48786 3.53408 3.69027 4.11735 4.25815 4.36962 4.54650 4.61928 4.69528 4.70824 4.83848 5.02506 5.06575 5.33539 5.40650 5.44454 5.46666 5.56868 5.64015 5.69288 5.91193 6.02033 6.07958 6.16069 6.29269 6.41100 6.54033 6.71459 6.72277 6.79494 6.86443 7.01438 7.64194 7.65950 7.86803 8.35292 8.45088 9.47494 10.01563 10.37136 11.39969 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002945 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.726083 B = 9504.525614 C =10667.025576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.154 3.846 4 C -0.220 4.220 5 C 0.124 3.876 6 N -0.340 5.340 7 C 0.277 3.723 8 C -0.144 4.144 9 N -0.499 5.499 10 C 0.125 3.875 11 C -0.148 4.148 12 C 0.596 3.404 13 O -0.573 6.573 14 N -0.700 5.700 15 C 0.119 3.881 16 C 0.159 3.841 17 H 0.055 0.945 18 C -0.162 4.162 19 N -0.724 5.724 20 C -0.245 4.245 21 H 0.071 0.929 22 C -0.009 4.009 23 N -0.929 5.929 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.196 0.804 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.385 0.615 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.142 -12.601 -8.716 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.102 3.898 4 C -0.241 4.241 5 C -0.002 4.002 6 N -0.012 5.012 7 C 0.037 3.963 8 C -0.166 4.166 9 N -0.219 5.219 10 C -0.035 4.035 11 C -0.260 4.260 12 C 0.385 3.615 13 O -0.456 6.456 14 N -0.350 5.350 15 C -0.005 4.005 16 C 0.049 3.951 17 H 0.073 0.927 18 C -0.223 4.223 19 N -0.366 5.366 20 C -0.376 4.376 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.177 0.823 32 H 0.199 0.801 33 H 0.179 0.821 34 H 0.213 0.787 35 H 0.249 0.751 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.219 0.781 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.039 -12.996 -8.793 22.438 hybrid contribution 0.421 0.688 0.485 0.941 sum -15.618 -12.308 -8.308 21.550 Atomic orbital electron populations 1.23184 0.77589 1.04555 1.01783 1.86040 1.21918 1.25624 1.88079 1.18839 0.91557 0.84453 0.94968 1.21057 1.01574 0.90475 1.11014 1.21833 0.81713 1.00689 0.95968 1.42587 1.05922 1.08132 1.44567 1.20620 0.86981 0.86769 1.01881 1.19357 0.91261 0.94955 1.11015 1.70609 1.13888 1.13243 1.24118 1.23375 0.95899 0.90259 0.93936 1.19860 0.89761 0.88863 1.27474 1.15334 0.85689 0.83400 0.77080 1.90753 1.18368 1.83347 1.53153 1.45623 1.09962 1.06608 1.72852 1.21715 0.98127 0.79304 1.01373 1.20520 0.89902 0.91548 0.93175 0.92713 1.22362 1.01055 0.98757 1.00122 1.42479 1.04579 1.67822 1.21763 1.19206 0.83462 1.30795 1.04098 0.91084 1.24743 0.97982 1.00858 0.96971 1.69659 1.34681 1.42963 1.10309 0.86226 0.85509 0.77271 0.77347 1.21809 1.21772 1.20718 0.92165 0.92198 0.87726 0.82302 0.80091 0.82086 0.78673 0.75100 0.91591 0.91726 0.93218 0.92259 0.94187 0.78070 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.63 10.49 -18.61 -0.20 -2.82 16 3 C 0.15 1.56 6.72 -38.73 -0.26 1.30 16 4 C -0.22 -1.98 8.98 -39.78 -0.36 -2.34 16 5 C 0.12 1.47 10.49 -16.83 -0.18 1.29 16 6 N -0.34 -5.04 2.97 -60.19 -0.18 -5.22 16 7 C 0.28 4.12 7.76 -155.99 -1.21 2.91 16 8 C -0.14 -1.75 10.09 -38.89 -0.39 -2.14 16 9 N -0.50 -8.20 11.25 -12.31 -0.14 -8.34 16 10 C 0.12 1.97 11.32 -17.24 -0.20 1.77 16 11 C -0.15 -2.40 6.83 -83.40 -0.57 -2.97 16 12 C 0.60 10.27 7.59 -14.96 -0.11 10.16 16 13 O -0.57 -10.77 15.35 5.11 0.08 -10.69 16 14 N -0.70 -11.68 5.36 -63.21 -0.34 -12.02 16 15 C 0.12 1.98 5.24 -4.04 -0.02 1.96 16 16 C 0.16 2.89 3.05 -67.93 -0.21 2.69 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 19 N -0.72 -16.60 4.56 -53.43 -0.24 -16.84 16 20 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 24 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 29 H 0.06 0.20 7.69 -51.93 -0.40 -0.20 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.16 0.86 6.39 -52.49 -0.34 0.52 16 32 H 0.18 2.09 6.79 -52.49 -0.36 1.73 16 33 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.20 2.72 7.37 -52.49 -0.39 2.33 16 35 H 0.41 6.88 6.92 -40.82 -0.28 6.60 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.39 9.64 7.80 -40.82 -0.32 9.33 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -32.61 358.49 -7.72 -40.33 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.40 Total: 13.23 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -2.40 Total: 6.54 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -0.18 Total: -68.62 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.12 Total: -13.51 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.61 -7.72 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690602271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.083 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds