Wall clock time and date at job start Tue Mar 31 2020 14:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35638 * 117.00388 * 2 1 4 4 C 1.40759 * 120.33103 * 0.20319 * 3 2 1 5 5 C 1.35011 * 120.04470 * 180.27731 * 4 3 2 6 6 N 1.36038 * 120.86060 * 359.49324 * 5 4 3 7 7 C 1.36662 * 120.88023 * 0.28047 * 6 5 4 8 8 C 1.37974 * 120.33077 * 179.97438 * 3 2 1 9 9 N 1.33332 * 108.60733 * 179.97438 * 7 6 5 10 10 C 1.32327 * 109.84969 * 359.97438 * 9 7 6 11 11 C 1.38503 * 108.26146 * 0.02562 * 10 9 7 12 12 C 1.41651 * 126.79181 * 180.02562 * 11 10 9 13 13 O 1.21792 * 120.00269 * 174.91888 * 12 11 10 14 14 N 1.34779 * 119.99703 * 354.91183 * 12 11 10 15 15 C 1.46495 * 120.00108 * 185.05356 * 14 12 11 16 16 C 1.53002 * 109.47219 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47238 * 65.00120 * 16 15 14 18 18 C 1.53001 * 109.46938 * 185.00007 * 16 15 14 19 19 N 1.46493 * 109.46872 * 304.99727 * 16 15 14 20 20 C 1.36937 * 119.99922 * 155.00364 * 19 16 15 21 21 H 1.07997 * 119.99928 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99953 * 180.02562 * 20 19 16 23 23 N 1.31615 * 120.00040 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99800 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47149 * 89.99577 * 24 22 20 26 26 H 1.48500 * 109.47397 * 209.99752 * 24 22 20 27 27 H 1.48507 * 109.47389 * 329.99846 * 24 22 20 28 28 H 1.09001 * 109.46767 * 300.00368 * 1 2 3 29 29 H 1.09005 * 109.46758 * 59.99802 * 1 2 3 30 30 H 1.08994 * 109.47586 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.97796 * 0.06989 * 4 3 2 32 32 H 1.07999 * 119.56919 * 179.76731 * 5 4 3 33 33 H 1.07998 * 120.39625 * 0.02562 * 8 3 2 34 34 H 1.07995 * 125.86866 * 179.97438 * 10 9 7 35 35 H 0.97004 * 119.99710 * 5.05934 * 14 12 11 36 36 H 1.09005 * 109.46950 * 300.00589 * 15 14 12 37 37 H 1.09001 * 109.47457 * 60.00104 * 15 14 12 38 38 H 1.09001 * 109.47064 * 60.00007 * 18 16 15 39 39 H 1.09001 * 109.47262 * 179.97438 * 18 16 15 40 40 H 1.09005 * 109.47146 * 299.99664 * 18 16 15 41 41 H 0.97004 * 120.00303 * 335.00096 * 19 16 15 42 42 H 0.97002 * 119.99933 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2852 2.3935 0.0043 5 6 1.9042 3.5933 -0.0014 6 7 3.2619 3.6781 -0.0010 7 6 4.0350 2.5511 -0.0005 8 6 3.4223 1.2886 0.0005 9 7 5.3177 2.9152 -0.0007 10 6 5.4101 4.2352 -0.0018 11 6 4.1283 4.7600 -0.0018 12 6 3.7731 6.1313 -0.0033 13 8 2.6033 6.4572 -0.0965 14 7 4.7296 7.0753 0.0985 15 6 4.3562 8.4876 0.2085 16 6 5.6207 9.3431 0.3095 17 1 6.1866 9.2660 -0.6188 18 6 5.2308 10.8030 0.5493 19 7 6.4438 8.8680 1.4243 20 6 7.7947 9.0921 1.4219 21 1 8.2533 9.6187 0.5981 22 6 8.5749 8.6415 2.4780 23 7 8.0160 7.9993 3.4818 24 14 10.4178 8.9466 2.4745 25 1 10.7063 10.2426 3.1395 26 1 11.1023 7.8511 3.2070 27 1 10.9099 8.9886 1.0740 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2064 2.3428 0.0088 32 1 1.3137 4.4976 -0.0018 33 1 4.0219 0.3903 0.0005 34 1 6.3273 4.8053 -0.0019 35 1 5.6653 6.8195 0.0989 36 1 3.7876 8.7828 -0.6734 37 1 3.7461 8.6338 1.0999 38 1 4.6648 10.8801 1.4777 39 1 6.1316 11.4125 0.6217 40 1 4.6183 11.1565 -0.2802 41 1 6.0320 8.3948 2.1641 42 1 8.5611 7.6848 4.2200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690602271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:26 Heat of formation + Delta-G solvation = 8.459158 kcal Electronic energy + Delta-G solvation = -25960.026752 eV Core-core repulsion = 22134.507594 eV Total energy + Delta-G solvation = -3825.519158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.01505 -40.85989 -40.32087 -37.89705 -37.57191 -35.20693 -34.26268 -33.66653 -31.59209 -30.87520 -30.16776 -28.22092 -26.97124 -25.67626 -25.00077 -24.31374 -23.13008 -21.70875 -21.54283 -19.61435 -19.12320 -19.01755 -18.04961 -17.59996 -17.47417 -16.97989 -16.73389 -16.55034 -16.02533 -15.92996 -15.52908 -15.36088 -15.28602 -14.95475 -14.56061 -14.32437 -13.86064 -13.63225 -13.52731 -13.41835 -13.11571 -13.04222 -12.77169 -12.70639 -12.47055 -12.37507 -12.16491 -11.69098 -11.63512 -11.53312 -11.09018 -11.05174 -10.92676 -10.14908 -10.04867 -8.99192 -8.78633 -7.88445 -5.17096 -0.48606 -0.28378 1.14361 1.20302 1.52029 1.52754 1.60590 1.97831 2.26361 2.31347 2.43190 2.60635 3.21590 3.34071 3.43162 3.46548 3.80037 3.86418 3.91711 3.95123 4.02209 4.25741 4.34307 4.42545 4.43586 4.48967 4.66783 4.73681 4.76837 4.80920 4.83789 4.89186 5.09943 5.10839 5.27235 5.29787 5.40730 5.60447 5.61354 5.77839 6.12501 6.32011 6.45317 6.58928 7.11888 7.39867 8.12380 8.36419 9.34098 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002945 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.726083 B = 9504.525614 C =10667.025576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.313 6.313 3 C 0.176 3.824 4 C -0.192 4.192 5 C 0.101 3.899 6 N -0.346 5.346 7 C 0.270 3.730 8 C -0.167 4.167 9 N -0.532 5.532 10 C 0.122 3.878 11 C -0.175 4.175 12 C 0.599 3.401 13 O -0.593 6.593 14 N -0.700 5.700 15 C 0.128 3.872 16 C 0.158 3.842 17 H 0.062 0.938 18 C -0.155 4.155 19 N -0.732 5.732 20 C -0.231 4.231 21 H 0.079 0.921 22 C -0.070 4.070 23 N -0.966 5.966 24 Si 0.964 3.036 25 H -0.294 1.294 26 H -0.302 1.302 27 H -0.268 1.268 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.204 0.796 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.203 0.797 35 H 0.411 0.589 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.373 0.627 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.171 -13.315 -9.992 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.224 6.224 3 C 0.123 3.877 4 C -0.213 4.213 5 C -0.024 4.024 6 N -0.018 5.018 7 C 0.031 3.969 8 C -0.189 4.189 9 N -0.252 5.252 10 C -0.038 4.038 11 C -0.287 4.287 12 C 0.389 3.611 13 O -0.478 6.478 14 N -0.350 5.350 15 C 0.004 3.996 16 C 0.050 3.950 17 H 0.080 0.920 18 C -0.215 4.215 19 N -0.373 5.373 20 C -0.363 4.363 21 H 0.097 0.903 22 C -0.263 4.263 23 N -0.617 5.617 24 Si 0.795 3.205 25 H -0.221 1.221 26 H -0.229 1.229 27 H -0.192 1.192 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.220 0.780 32 H 0.201 0.799 33 H 0.187 0.813 34 H 0.219 0.781 35 H 0.248 0.752 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.205 0.795 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.104 -13.691 -10.122 24.852 hybrid contribution 0.800 0.739 0.805 1.354 sum -17.304 -12.952 -9.317 23.537 Atomic orbital electron populations 1.23616 0.74970 1.06622 1.03306 1.86070 1.24531 1.24578 1.87198 1.18900 0.91040 0.85520 0.92232 1.21518 1.03488 0.88754 1.07499 1.22175 0.80720 1.02062 0.97480 1.42669 1.06862 1.07520 1.44728 1.20974 0.86785 0.87672 1.01420 1.19544 0.92597 0.94175 1.12555 1.70559 1.15249 1.13482 1.25922 1.23523 0.96260 0.90389 0.93638 1.19712 0.90320 0.88824 1.29846 1.15411 0.85350 0.83795 0.76546 1.90720 1.18945 1.83699 1.54414 1.45596 1.09862 1.06677 1.72891 1.21618 0.97162 0.79044 1.01757 1.20706 0.90042 0.92597 0.91680 0.92031 1.22233 1.00888 0.97099 1.01273 1.42611 1.04201 1.67871 1.22582 1.19560 0.84744 1.28570 1.03411 0.90293 1.25423 1.01608 1.01976 0.97285 1.69810 1.35625 1.45170 1.11086 0.85275 0.81338 0.76297 0.77632 1.22122 1.22895 1.19248 0.90698 0.90496 0.85674 0.77954 0.79933 0.81284 0.78061 0.75238 0.89649 0.92737 0.93875 0.93630 0.90708 0.79545 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.82 113.37 1.11 1.15 16 2 O -0.31 -4.36 10.49 -89.52 -0.94 -5.30 16 3 C 0.18 3.13 6.72 22.82 0.15 3.29 16 4 C -0.19 -2.89 8.98 22.14 0.20 -2.69 16 5 C 0.10 2.28 10.49 83.30 0.87 3.15 16 6 N -0.35 -10.32 2.97 -344.35 -1.02 -11.34 16 7 C 0.27 8.15 7.76 133.86 1.04 9.19 16 8 C -0.17 -3.91 10.09 22.72 0.23 -3.69 16 9 N -0.53 -18.15 11.25 -192.86 -2.17 -20.32 16 10 C 0.12 4.03 11.32 84.68 0.96 4.99 16 11 C -0.18 -5.86 6.83 38.98 0.27 -5.60 16 12 C 0.60 20.96 7.59 85.08 0.65 21.61 16 13 O -0.59 -22.30 15.35 -4.64 -0.07 -22.37 16 14 N -0.70 -23.61 5.36 -472.07 -2.53 -26.14 16 15 C 0.13 4.17 5.24 86.38 0.45 4.63 16 16 C 0.16 5.61 3.05 44.99 0.14 5.75 16 17 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 18 C -0.15 -4.96 9.49 71.98 0.68 -4.28 16 19 N -0.73 -33.65 4.56 -322.95 -1.47 -35.12 16 20 C -0.23 -11.88 9.93 84.03 0.83 -11.04 16 21 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 22 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 23 N -0.97 -57.39 13.06 21.65 0.28 -57.11 16 24 Si 0.96 44.96 29.55 68.60 2.03 46.99 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H 0.07 0.17 7.67 -2.39 -0.02 0.15 16 29 H 0.08 0.14 7.69 -2.38 -0.02 0.12 16 30 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.20 1.17 6.39 -2.91 -0.02 1.15 16 32 H 0.18 4.04 6.79 -2.91 -0.02 4.02 16 33 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.20 6.00 7.37 -2.91 -0.02 5.97 16 35 H 0.41 14.06 6.92 -92.70 -0.64 13.42 16 36 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.37 19.04 7.80 -92.71 -0.72 18.31 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -71.61 358.49 1.86 -69.75 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.29 Total: 37.90 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 8.05 Total: 23.07 kcal Atomic # 7 Polarization: -143.12 SS G_CDS: -6.91 Total: -150.03 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -1.01 Total: -27.67 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.61 1.86 -69.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690602271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.208 kcal (2) G-P(sol) polarization free energy of solvation -71.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds