Wall clock time and date at job start Tue Mar 31 2020 14:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 C 1.53000 * 109.47144 * 174.99958 * 4 2 1 6 6 N 1.46506 * 109.46938 * 179.97438 * 5 4 2 7 7 C 1.36941 * 119.99451 * 179.97438 * 6 5 4 8 8 H 1.07992 * 120.00600 * 0.02562 * 7 6 5 9 9 C 1.38818 * 119.99520 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00214 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99962 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46951 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47170 * 119.99828 * 11 9 7 14 14 H 1.48501 * 109.47492 * 240.00192 * 11 9 7 15 15 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 16 16 C 1.34784 * 119.99971 * 275.00026 * 15 2 1 17 17 O 1.21592 * 119.99625 * 359.72710 * 16 15 2 18 18 C 1.47521 * 119.99834 * 179.97438 * 16 15 2 19 19 C 1.39532 * 120.24311 * 359.72779 * 18 16 15 20 20 C 1.38211 * 120.26050 * 179.78868 * 19 18 16 21 21 C 1.37962 * 120.70810 * 0.46734 * 20 19 18 22 22 C 1.39606 * 120.11314 * 359.78711 * 21 20 19 23 23 N 1.35984 * 133.38861 * 179.97438 * 22 21 20 24 24 C 1.30737 * 109.51066 * 180.02562 * 23 22 21 25 25 O 1.35281 * 125.05819 * 180.02562 * 24 23 22 26 26 N 1.36481 * 109.89068 * 359.97438 * 24 23 22 27 27 H 0.96993 * 126.33008 * 180.02562 * 26 24 23 28 28 C 1.37854 * 107.34601 * 0.02562 * 26 24 23 29 29 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 30 30 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 31 31 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47330 * 294.99933 * 4 2 1 33 33 H 1.08999 * 109.47417 * 54.99517 * 4 2 1 34 34 H 1.08998 * 109.47016 * 299.99692 * 5 4 2 35 35 H 1.08993 * 109.47367 * 59.99969 * 5 4 2 36 36 H 0.96989 * 120.00320 * 359.97438 * 6 5 4 37 37 H 0.97000 * 120.00624 * 179.97438 * 10 9 7 38 38 H 0.96999 * 119.99984 * 94.99874 * 15 2 1 39 39 H 1.08003 * 119.87004 * 0.02562 * 19 18 16 40 40 H 1.08006 * 119.64410 * 180.20855 * 20 19 18 41 41 H 1.08004 * 119.94046 * 179.76994 * 21 20 19 42 42 H 0.96697 * 113.99824 * 269.97298 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0531 -1.3043 -2.5096 7 6 5.3952 -1.3402 -2.7794 8 1 6.0936 -0.8596 -2.1106 9 6 5.8580 -1.9956 -3.9123 10 7 5.0069 -2.5818 -4.7273 11 14 7.6886 -2.0440 -4.2809 12 1 8.4269 -1.3152 -3.2184 13 1 8.1479 -3.4557 -4.3229 14 1 7.9464 -1.4003 -5.5941 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8626 1.1628 2.4105 18 6 2.6384 -0.7137 3.5618 19 6 2.9658 -2.0690 3.5064 20 6 3.4302 -2.7199 4.6337 21 6 3.5681 -2.0462 5.8297 22 6 3.2421 -0.6913 5.9120 23 7 3.2716 0.2169 6.9237 24 6 2.8593 1.3762 6.4820 25 8 2.7639 2.5020 7.2260 26 7 2.5404 1.2821 5.1583 27 1 2.2105 1.9989 4.5943 28 6 2.7739 -0.0201 4.7709 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7714 -1.2056 33 1 1.6053 -0.2617 -2.1369 34 1 3.8531 0.4371 -1.3573 35 1 3.9994 -1.0727 -0.4260 36 1 3.4260 -1.7364 -3.1102 37 1 5.3302 -3.0394 -5.5191 38 1 2.2491 -1.6317 1.1526 39 1 2.8595 -2.6105 2.5780 40 1 3.6839 -3.7683 4.5787 41 1 3.9287 -2.5681 6.7039 42 1 1.9063 2.6166 7.6577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699105045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:15 Heat of formation + Delta-G solvation = 3.964199 kcal Electronic energy + Delta-G solvation = -25783.788200 eV Core-core repulsion = 21958.074126 eV Total energy + Delta-G solvation = -3825.714074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.52381 -39.99122 -38.35905 -36.75443 -36.59260 -34.41420 -33.47468 -32.17024 -31.02710 -29.92164 -29.17279 -27.92362 -24.59674 -23.88020 -22.86320 -22.44764 -21.66933 -20.89960 -20.55234 -19.20827 -18.13904 -17.93036 -17.09506 -16.80322 -16.29722 -15.96561 -15.28930 -14.87712 -14.68223 -14.62093 -14.33854 -14.11236 -13.83722 -13.51151 -13.38075 -12.93012 -12.88808 -12.49833 -12.37652 -12.03683 -11.95117 -11.89484 -11.26241 -11.06843 -11.03649 -10.83968 -10.70589 -10.60827 -10.56363 -10.04453 -9.98038 -9.73506 -9.17093 -8.90115 -8.71630 -8.48269 -6.95722 -5.79707 -3.08588 0.22111 1.12661 1.92784 2.24436 2.84850 3.05251 3.41699 3.42005 3.47909 3.49912 3.60447 4.20814 4.49368 4.55957 4.59089 4.79132 4.88430 4.93418 5.04375 5.17216 5.28314 5.35916 5.51866 5.57680 5.65966 5.68698 5.81875 5.87107 5.95802 6.00031 6.07406 6.17812 6.21570 6.28409 6.37121 6.39970 6.46670 6.76562 6.81008 7.26140 7.37827 7.42151 7.68501 8.07366 8.39297 9.50644 10.07672 10.42364 11.43234 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002782 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.460121 B =10062.854060 C =10835.765400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.708 5.708 16 C 0.563 3.437 17 O -0.555 6.555 18 C -0.127 4.127 19 C -0.056 4.056 20 C -0.132 4.132 21 C -0.035 4.035 22 C 0.045 3.955 23 N -0.484 5.484 24 C 0.450 3.550 25 O -0.441 6.441 26 N -0.584 5.584 27 H 0.434 0.566 28 C 0.111 3.889 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.402 0.598 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 2.883 22.038 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.174 4.174 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.359 5.359 16 C 0.351 3.649 17 O -0.436 6.436 18 C -0.133 4.133 19 C -0.077 4.077 20 C -0.153 4.153 21 C -0.055 4.055 22 C -0.073 4.073 23 N -0.216 5.216 24 C 0.145 3.855 25 O -0.243 6.243 26 N -0.208 5.208 27 H 0.276 0.724 28 C -0.002 4.002 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.239 0.761 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -10.403 3.764 22.808 25.349 hybrid contribution 0.070 0.038 -1.400 1.402 sum -10.333 3.802 21.408 24.074 Atomic orbital electron populations 1.22159 0.95269 1.02123 1.02319 1.21033 0.93643 0.97769 0.83528 0.89205 1.22075 0.98127 1.00848 0.96309 1.20636 0.90291 0.95669 0.90812 1.42367 1.05413 1.64897 1.25125 1.19275 0.83816 1.28400 1.05547 0.91187 1.24743 0.97747 1.00859 0.97653 1.69662 1.32730 1.40714 1.15153 0.86122 0.85045 0.77254 0.77820 1.20529 1.21809 1.21831 1.46014 1.66227 1.14307 1.09377 1.18080 0.77335 0.86350 0.83118 1.90681 1.51924 1.15612 1.85337 1.18893 1.08920 0.94313 0.91196 1.21251 0.95210 0.91893 0.99301 1.20893 1.01824 1.00822 0.91720 1.20481 0.96294 0.90201 0.98532 1.18800 1.05168 0.94773 0.88578 1.70732 1.23770 0.97761 1.29322 1.20387 0.97638 0.87120 0.80314 1.84843 1.40529 1.35369 1.63527 1.43501 1.55334 1.10862 1.11057 0.72354 1.18314 1.02281 0.84163 0.95458 0.92502 0.91390 0.92402 0.91245 0.90087 0.96448 0.96369 0.78310 0.93543 0.76137 0.84309 0.84096 0.84476 0.73112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 2 C 0.14 1.84 2.58 -67.94 -0.18 1.67 16 3 H 0.09 1.30 7.57 -51.93 -0.39 0.91 16 4 C -0.14 -1.98 4.87 -26.74 -0.13 -2.11 16 5 C 0.15 2.99 6.15 -4.04 -0.02 2.96 16 6 N -0.73 -18.28 5.60 -59.91 -0.34 -18.62 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 11 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 N -0.71 -8.41 4.48 -54.85 -0.25 -8.66 16 16 C 0.56 7.42 7.73 -12.47 -0.10 7.33 16 17 O -0.56 -8.55 14.93 5.28 0.08 -8.47 16 18 C -0.13 -1.49 5.88 -104.95 -0.62 -2.11 16 19 C -0.06 -0.52 9.53 -39.11 -0.37 -0.89 16 20 C -0.13 -1.07 9.99 -39.69 -0.40 -1.47 16 21 C -0.04 -0.33 10.09 -39.17 -0.40 -0.73 16 22 C 0.04 0.54 7.22 -84.69 -0.61 -0.07 16 23 N -0.48 -6.14 11.32 -12.23 -0.14 -6.27 16 24 C 0.45 4.91 9.40 -88.85 -0.83 4.08 16 25 O -0.44 -3.44 13.63 -17.54 -0.24 -3.68 16 26 N -0.58 -6.59 6.03 -11.70 -0.07 -6.66 16 27 H 0.43 4.61 7.71 -40.82 -0.31 4.30 16 28 C 0.11 1.38 6.88 -83.66 -0.58 0.80 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.36 7.75 -51.93 -0.40 -0.05 16 36 H 0.38 9.95 7.67 -40.82 -0.31 9.63 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.40 4.06 6.63 -40.82 -0.27 3.79 16 39 H 0.14 0.99 6.39 -52.48 -0.34 0.65 16 40 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.41 0.83 9.06 45.56 0.41 1.24 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -35.75 359.08 -8.51 -44.25 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.54 Total: 11.91 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -4.12 Total: 0.72 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -0.07 Total: -67.50 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.16 Total: -12.15 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.75 -8.51 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699105045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.218 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds