Wall clock time and date at job start Tue Mar 31 2020 14:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.53003 * 109.46992 * 185.00330 * 4 2 1 6 6 N 1.46497 * 109.47111 * 180.02562 * 5 4 2 7 7 C 1.36941 * 120.00140 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99646 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31612 * 120.00012 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99751 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47160 * 59.99789 * 11 9 7 13 13 H 1.48498 * 109.47166 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47074 * 300.00132 * 11 9 7 15 15 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 16 16 C 1.34773 * 120.00111 * 84.99828 * 15 2 1 17 17 O 1.21595 * 120.00065 * 0.02562 * 16 15 2 18 18 C 1.47529 * 120.00008 * 179.97438 * 16 15 2 19 19 C 1.39533 * 120.23977 * 359.72692 * 18 16 15 20 20 C 1.38213 * 120.25760 * 179.70070 * 19 18 16 21 21 C 1.37961 * 120.70677 * 0.57587 * 20 19 18 22 22 C 1.39598 * 120.11664 * 359.72577 * 21 20 19 23 23 N 1.35991 * 133.39291 * 180.02562 * 22 21 20 24 24 C 1.30735 * 109.50954 * 179.97438 * 23 22 21 25 25 O 1.35278 * 125.05360 * 180.02562 * 24 23 22 26 26 N 1.36479 * 109.89279 * 0.02562 * 24 23 22 27 27 H 0.96998 * 126.32940 * 180.02562 * 26 24 23 28 28 C 1.37848 * 107.34719 * 359.97438 * 26 24 23 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 33 33 H 1.09002 * 109.47223 * 64.99920 * 4 2 1 34 34 H 1.08998 * 109.46717 * 299.99642 * 5 4 2 35 35 H 1.09000 * 109.46966 * 59.99762 * 5 4 2 36 36 H 0.96996 * 119.99855 * 359.97438 * 6 5 4 37 37 H 0.97006 * 120.00136 * 179.97438 * 10 9 7 38 38 H 0.97003 * 119.99624 * 264.99510 * 15 2 1 39 39 H 1.07996 * 119.87252 * 359.97438 * 19 18 16 40 40 H 1.08007 * 119.64333 * 180.25416 * 20 19 18 41 41 H 1.08001 * 119.94151 * 179.70404 * 21 20 19 42 42 H 0.96701 * 114.00126 * 269.95511 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0533 -1.3044 2.5094 7 6 5.3954 -1.3403 2.7793 8 1 6.0938 -0.8595 2.1104 9 6 5.8581 -1.9948 3.9127 10 7 5.0069 -2.5803 4.7281 11 14 7.6888 -2.0444 4.2805 12 1 8.2010 -0.6588 4.4320 13 1 7.9206 -2.7978 5.5390 14 1 8.4002 -2.7156 3.1630 15 7 2.0184 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8583 1.1618 -2.4116 18 6 2.6393 -0.7134 -3.5617 19 6 2.9785 -2.0656 -3.5032 20 6 3.4338 -2.7188 -4.6329 21 6 3.5712 -2.0451 -5.8290 22 6 3.2443 -0.6905 -5.9115 23 7 3.2732 0.2176 -6.9234 24 6 2.8601 1.3767 -6.4817 25 8 2.7630 2.5021 -7.2261 26 7 2.5414 1.2825 -5.1580 27 1 2.2103 1.9991 -4.5943 28 6 2.7757 -0.0194 -4.7705 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7716 1.2055 34 1 3.9995 -1.0727 0.4259 35 1 3.8532 0.4370 1.3573 36 1 3.4260 -1.7359 3.1103 37 1 5.3303 -3.0380 5.5199 38 1 2.2491 -1.6317 -1.1527 39 1 2.8806 -2.6050 -2.5728 40 1 3.6897 -3.7667 -4.5775 41 1 3.9327 -2.5666 -6.7030 42 1 3.5643 3.0434 -7.2269 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699105046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:20 Heat of formation + Delta-G solvation = 3.932830 kcal Electronic energy + Delta-G solvation = -25785.642157 eV Core-core repulsion = 21959.926722 eV Total energy + Delta-G solvation = -3825.715434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.52210 -39.98927 -38.35377 -36.75064 -36.59116 -34.41582 -33.47317 -32.17114 -31.02941 -29.91981 -29.17105 -27.92222 -24.59440 -23.87994 -22.86090 -22.44495 -21.66872 -20.90020 -20.55116 -19.20374 -18.13618 -17.92758 -17.09984 -16.79240 -16.34348 -15.90665 -15.25232 -14.98851 -14.67440 -14.60121 -14.23587 -14.18023 -13.83942 -13.51527 -13.38817 -12.92940 -12.87692 -12.49386 -12.37449 -12.03540 -11.94850 -11.89322 -11.25985 -11.06556 -11.03541 -10.82536 -10.70249 -10.62624 -10.56211 -10.10635 -9.97988 -9.73227 -9.16944 -8.89734 -8.71457 -8.48146 -6.96404 -5.79941 -3.08966 0.22302 1.12768 1.91804 2.26126 2.85382 3.05043 3.42041 3.42315 3.46508 3.47505 3.60808 4.20984 4.49377 4.55611 4.59239 4.79222 4.88571 4.93566 5.04559 5.17626 5.28490 5.36076 5.51472 5.57856 5.66326 5.69161 5.82059 5.87356 5.96233 6.00182 6.07575 6.17876 6.21959 6.28168 6.37275 6.40121 6.46790 6.75896 6.80538 7.26396 7.37976 7.42306 7.66584 8.07493 8.39069 9.50160 10.07327 10.42016 11.42858 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.002785 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.998696 B =10051.641292 C =10819.503436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.136 4.136 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.285 1.285 15 N -0.708 5.708 16 C 0.563 3.437 17 O -0.556 6.556 18 C -0.127 4.127 19 C -0.056 4.056 20 C -0.132 4.132 21 C -0.035 4.035 22 C 0.045 3.955 23 N -0.484 5.484 24 C 0.450 3.550 25 O -0.442 6.442 26 N -0.584 5.584 27 H 0.434 0.566 28 C 0.111 3.889 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.018 0.982 35 H 0.017 0.983 36 H 0.383 0.617 37 H 0.256 0.744 38 H 0.402 0.598 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 3.692 -21.110 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.174 4.174 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.359 5.359 16 C 0.351 3.649 17 O -0.436 6.436 18 C -0.133 4.133 19 C -0.076 4.076 20 C -0.153 4.153 21 C -0.055 4.055 22 C -0.073 4.073 23 N -0.216 5.216 24 C 0.146 3.854 25 O -0.244 6.244 26 N -0.208 5.208 27 H 0.276 0.724 28 C -0.002 4.002 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.217 0.783 37 H 0.066 0.934 38 H 0.239 0.761 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -8.207 4.273 -22.157 24.012 hybrid contribution 0.972 0.282 1.612 1.904 sum -7.235 4.555 -20.545 22.253 Atomic orbital electron populations 1.22163 0.95261 1.02144 1.02340 1.21035 0.93662 0.97738 0.83514 0.89220 1.22078 0.98118 1.00861 0.96315 1.20632 0.90296 0.95635 0.90812 1.42351 1.05381 1.64932 1.25118 1.19181 0.83822 1.28657 1.05580 0.91310 1.24738 0.97735 1.00829 0.97614 1.69644 1.32909 1.40585 1.15129 0.86264 0.85075 0.77518 0.77314 1.21262 1.21638 1.21211 1.46014 1.66214 1.14303 1.09390 1.18079 0.77361 0.86343 0.83098 1.90682 1.51857 1.15728 1.85300 1.18895 1.08844 0.94342 0.91254 1.21251 0.95239 0.91840 0.99316 1.20893 1.01899 1.00763 0.91712 1.20479 0.96363 0.90102 0.98560 1.18801 1.05292 0.94904 0.88331 1.70737 1.22961 0.98565 1.29324 1.20389 0.97246 0.88310 0.79504 1.84825 1.42192 1.31472 1.65893 1.43502 1.55773 1.11144 1.10344 0.72352 1.18313 1.01836 0.84630 0.95427 0.92396 0.91391 0.92469 0.90087 0.91238 0.96389 0.96484 0.78301 0.93428 0.76136 0.84306 0.84097 0.84479 0.72995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.42 16 2 C 0.14 1.85 2.57 -67.93 -0.17 1.67 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 4 C -0.14 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.15 2.97 6.15 -4.04 -0.02 2.95 16 6 N -0.73 -18.21 5.60 -59.91 -0.34 -18.54 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 10 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 11 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 N -0.71 -8.42 4.48 -54.84 -0.25 -8.67 16 16 C 0.56 7.43 7.73 -12.47 -0.10 7.33 16 17 O -0.56 -8.56 14.93 5.28 0.08 -8.48 16 18 C -0.13 -1.50 5.88 -104.95 -0.62 -2.11 16 19 C -0.06 -0.52 9.53 -39.11 -0.37 -0.89 16 20 C -0.13 -1.08 9.99 -39.69 -0.40 -1.47 16 21 C -0.04 -0.34 10.09 -39.18 -0.40 -0.73 16 22 C 0.04 0.54 7.22 -84.69 -0.61 -0.07 16 23 N -0.48 -6.14 11.32 -12.24 -0.14 -6.28 16 24 C 0.45 4.92 9.40 -88.85 -0.83 4.08 16 25 O -0.44 -3.45 13.63 -17.53 -0.24 -3.69 16 26 N -0.58 -6.60 6.03 -11.70 -0.07 -6.67 16 27 H 0.43 4.62 7.71 -40.82 -0.31 4.30 16 28 C 0.11 1.38 6.88 -83.66 -0.58 0.80 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 9.92 7.67 -40.82 -0.31 9.61 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.40 4.07 6.63 -40.82 -0.27 3.80 16 39 H 0.14 0.99 6.39 -52.49 -0.34 0.66 16 40 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.41 0.95 9.06 45.56 0.41 1.36 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -35.46 359.09 -8.51 -43.97 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -4.55 Total: 12.23 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -4.12 Total: 0.70 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -0.07 Total: -67.36 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.16 Total: -12.17 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.46 -8.51 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699105046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.903 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds